Experiment: Growth in presence of limonene
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_005393 and ABIE53_005394 are separated by 90 nucleotides ABIE53_005394 and ABIE53_005395 are separated by 37 nucleotides ABIE53_005395 and ABIE53_005396 are separated by 111 nucleotides ABIE53_005396 and ABIE53_005397 are separated by 155 nucleotides ABIE53_005397 and ABIE53_005398 are separated by 159 nucleotides
ABIE53_005393: ABIE53_005393 - hypothetical protein, at 1,666,668 to 1,667,009
_005393
ABIE53_005394: ABIE53_005394 - organic hydroperoxide reductase OsmC/OhrA, at 1,667,100 to 1,667,576
_005394
ABIE53_005395: ABIE53_005395 - hypothetical protein, at 1,667,614 to 1,667,856
_005395
ABIE53_005396: ABIE53_005396 - Lrp/AsnC family leucine-responsive transcriptional regulator, at 1,667,968 to 1,668,435
_005396
ABIE53_005397: ABIE53_005397 - threonine/homoserine/homoserine lactone efflux protein, at 1,668,591 to 1,669,256
_005397
ABIE53_005398: ABIE53_005398 - hypothetical protein, at 1,669,416 to 1,669,925
_005398
Position (kb) 1667
1668
1669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1667.007 kb on + strand at 1667.008 kb on - strand at 1667.042 kb on + strand at 1667.042 kb on + strand at 1667.042 kb on + strand at 1667.043 kb on - strand at 1667.053 kb on - strand at 1667.106 kb on + strand at 1667.121 kb on + strand at 1667.121 kb on + strand at 1667.121 kb on + strand at 1667.121 kb on + strand at 1667.121 kb on + strand at 1667.121 kb on + strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.122 kb on - strand at 1667.181 kb on + strand, within ABIE53_005394 at 1667.181 kb on + strand, within ABIE53_005394 at 1667.181 kb on + strand, within ABIE53_005394 at 1667.181 kb on + strand, within ABIE53_005394 at 1667.182 kb on - strand, within ABIE53_005394 at 1667.182 kb on - strand, within ABIE53_005394 at 1667.322 kb on + strand, within ABIE53_005394 at 1667.322 kb on + strand, within ABIE53_005394 at 1667.322 kb on + strand, within ABIE53_005394 at 1667.323 kb on - strand, within ABIE53_005394 at 1667.323 kb on - strand, within ABIE53_005394 at 1667.323 kb on - strand, within ABIE53_005394 at 1667.323 kb on - strand, within ABIE53_005394 at 1667.323 kb on - strand, within ABIE53_005394 at 1667.323 kb on - strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.511 kb on + strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.512 kb on - strand, within ABIE53_005394 at 1667.513 kb on + strand, within ABIE53_005394 at 1667.615 kb on + strand at 1667.616 kb on - strand at 1667.672 kb on + strand, within ABIE53_005395 at 1667.797 kb on + strand, within ABIE53_005395 at 1667.797 kb on + strand, within ABIE53_005395 at 1667.797 kb on + strand, within ABIE53_005395 at 1667.798 kb on - strand, within ABIE53_005395 at 1667.952 kb on + strand at 1667.952 kb on + strand at 1667.952 kb on + strand at 1667.952 kb on + strand at 1667.953 kb on - strand at 1667.953 kb on - strand at 1667.953 kb on - strand at 1667.953 kb on - strand at 1667.953 kb on - strand at 1668.013 kb on + strand at 1668.014 kb on - strand at 1668.077 kb on + strand, within ABIE53_005396 at 1668.111 kb on + strand, within ABIE53_005396 at 1668.111 kb on + strand, within ABIE53_005396 at 1668.111 kb on + strand, within ABIE53_005396 at 1668.111 kb on + strand, within ABIE53_005396 at 1668.112 kb on - strand, within ABIE53_005396 at 1668.112 kb on - strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.113 kb on + strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.114 kb on - strand, within ABIE53_005396 at 1668.285 kb on + strand, within ABIE53_005396 at 1668.286 kb on - strand, within ABIE53_005396 at 1668.286 kb on - strand, within ABIE53_005396 at 1668.287 kb on + strand, within ABIE53_005396 at 1668.287 kb on + strand, within ABIE53_005396 at 1668.287 kb on + strand, within ABIE53_005396 at 1668.287 kb on + strand, within ABIE53_005396 at 1668.287 kb on + strand, within ABIE53_005396 at 1668.287 kb on + strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.288 kb on - strand, within ABIE53_005396 at 1668.476 kb on + strand at 1668.477 kb on - strand at 1668.477 kb on - strand at 1668.477 kb on - strand at 1668.564 kb on + strand at 1668.618 kb on + strand at 1668.618 kb on + strand at 1668.618 kb on + strand at 1668.618 kb on + strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.619 kb on - strand at 1668.620 kb on + strand at 1668.642 kb on + strand at 1668.643 kb on - strand at 1668.643 kb on - strand at 1668.686 kb on + strand, within ABIE53_005397 at 1668.686 kb on + strand, within ABIE53_005397 at 1668.687 kb on - strand, within ABIE53_005397 at 1668.806 kb on - strand, within ABIE53_005397 at 1668.806 kb on - strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.807 kb on + strand, within ABIE53_005397 at 1668.808 kb on - strand, within ABIE53_005397 at 1668.808 kb on - strand, within ABIE53_005397 at 1668.808 kb on - strand, within ABIE53_005397 at 1668.837 kb on + strand, within ABIE53_005397 at 1668.838 kb on - strand, within ABIE53_005397 at 1668.838 kb on - strand, within ABIE53_005397 at 1668.838 kb on - strand, within ABIE53_005397 at 1668.838 kb on - strand, within ABIE53_005397 at 1669.134 kb on + strand, within ABIE53_005397 at 1669.134 kb on + strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.135 kb on - strand, within ABIE53_005397 at 1669.284 kb on - strand at 1669.335 kb on + strand at 1669.336 kb on - strand at 1669.404 kb on + strand at 1669.404 kb on + strand at 1669.404 kb on + strand at 1669.405 kb on - strand at 1669.405 kb on - strand at 1669.405 kb on - strand at 1669.417 kb on + strand at 1669.417 kb on + strand at 1669.417 kb on + strand at 1669.418 kb on - strand at 1669.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in presence of limonene remove 1,667,007 + -1.4 1,667,008 - +0.8 1,667,042 + +0.2 1,667,042 + -0.1 1,667,042 + -0.4 1,667,043 - -0.2 1,667,053 - -1.0 1,667,106 + +0.2 1,667,121 + -1.3 1,667,121 + +0.3 1,667,121 + +0.6 1,667,121 + +1.6 1,667,121 + +0.6 1,667,121 + -0.7 1,667,122 - +0.4 1,667,122 - -2.4 1,667,122 - +0.3 1,667,122 - +0.0 1,667,122 - -0.7 1,667,122 - -0.5 1,667,122 - +0.8 1,667,122 - -0.4 1,667,122 - +1.0 1,667,122 - +2.2 1,667,181 + ABIE53_005394 0.17 +2.0 1,667,181 + ABIE53_005394 0.17 +0.6 1,667,181 + ABIE53_005394 0.17 -0.4 1,667,181 + ABIE53_005394 0.17 -1.2 1,667,182 - ABIE53_005394 0.17 -0.4 1,667,182 - ABIE53_005394 0.17 +0.0 1,667,322 + ABIE53_005394 0.47 -0.6 1,667,322 + ABIE53_005394 0.47 +0.4 1,667,322 + ABIE53_005394 0.47 -0.6 1,667,323 - ABIE53_005394 0.47 -1.0 1,667,323 - ABIE53_005394 0.47 -0.7 1,667,323 - ABIE53_005394 0.47 +0.2 1,667,323 - ABIE53_005394 0.47 -1.1 1,667,323 - ABIE53_005394 0.47 -0.4 1,667,323 - ABIE53_005394 0.47 -0.8 1,667,511 + ABIE53_005394 0.86 -0.3 1,667,511 + ABIE53_005394 0.86 -0.9 1,667,511 + ABIE53_005394 0.86 -1.9 1,667,511 + ABIE53_005394 0.86 -1.4 1,667,511 + ABIE53_005394 0.86 +0.7 1,667,511 + ABIE53_005394 0.86 -0.6 1,667,511 + ABIE53_005394 0.86 -0.4 1,667,511 + ABIE53_005394 0.86 -0.4 1,667,511 + ABIE53_005394 0.86 -2.5 1,667,511 + ABIE53_005394 0.86 -0.8 1,667,511 + ABIE53_005394 0.86 -0.8 1,667,511 + ABIE53_005394 0.86 -1.4 1,667,511 + ABIE53_005394 0.86 -0.2 1,667,511 + ABIE53_005394 0.86 -0.1 1,667,511 + ABIE53_005394 0.86 +0.0 1,667,511 + ABIE53_005394 0.86 +1.5 1,667,511 + ABIE53_005394 0.86 -2.2 1,667,511 + ABIE53_005394 0.86 -0.6 1,667,512 - ABIE53_005394 0.86 -1.6 1,667,512 - ABIE53_005394 0.86 +0.3 1,667,512 - ABIE53_005394 0.86 +0.3 1,667,512 - ABIE53_005394 0.86 -1.0 1,667,512 - ABIE53_005394 0.86 -2.0 1,667,512 - ABIE53_005394 0.86 -0.3 1,667,512 - ABIE53_005394 0.86 +0.8 1,667,512 - ABIE53_005394 0.86 +1.6 1,667,513 + ABIE53_005394 0.87 +0.8 1,667,615 + +1.6 1,667,616 - +1.6 1,667,672 + ABIE53_005395 0.24 -0.2 1,667,797 + ABIE53_005395 0.75 +1.0 1,667,797 + ABIE53_005395 0.75 +0.4 1,667,797 + ABIE53_005395 0.75 +0.1 1,667,798 - ABIE53_005395 0.76 +0.0 1,667,952 + -0.6 1,667,952 + -0.6 1,667,952 + -1.7 1,667,952 + +0.0 1,667,953 - +0.4 1,667,953 - -1.0 1,667,953 - -0.1 1,667,953 - -0.7 1,667,953 - -0.2 1,668,013 + -2.2 1,668,014 - +1.2 1,668,077 + ABIE53_005396 0.23 +0.0 1,668,111 + ABIE53_005396 0.31 +0.3 1,668,111 + ABIE53_005396 0.31 +0.1 1,668,111 + ABIE53_005396 0.31 +0.1 1,668,111 + ABIE53_005396 0.31 +0.3 1,668,112 - ABIE53_005396 0.31 -0.1 1,668,112 - ABIE53_005396 0.31 -0.4 1,668,113 + ABIE53_005396 0.31 -0.1 1,668,113 + ABIE53_005396 0.31 +0.9 1,668,113 + ABIE53_005396 0.31 -0.5 1,668,113 + ABIE53_005396 0.31 +1.3 1,668,113 + ABIE53_005396 0.31 +0.2 1,668,113 + ABIE53_005396 0.31 -0.2 1,668,113 + ABIE53_005396 0.31 +1.8 1,668,114 - ABIE53_005396 0.31 +0.4 1,668,114 - ABIE53_005396 0.31 -0.2 1,668,114 - ABIE53_005396 0.31 +1.2 1,668,114 - ABIE53_005396 0.31 +0.0 1,668,114 - ABIE53_005396 0.31 +0.2 1,668,114 - ABIE53_005396 0.31 +0.6 1,668,114 - ABIE53_005396 0.31 +0.7 1,668,114 - ABIE53_005396 0.31 -0.1 1,668,114 - ABIE53_005396 0.31 -1.0 1,668,114 - ABIE53_005396 0.31 +0.8 1,668,114 - ABIE53_005396 0.31 -1.2 1,668,114 - ABIE53_005396 0.31 +1.0 1,668,114 - ABIE53_005396 0.31 +0.5 1,668,114 - ABIE53_005396 0.31 -0.6 1,668,114 - ABIE53_005396 0.31 -0.5 1,668,114 - ABIE53_005396 0.31 -1.2 1,668,114 - ABIE53_005396 0.31 +0.0 1,668,285 + ABIE53_005396 0.68 -1.4 1,668,286 - ABIE53_005396 0.68 +1.3 1,668,286 - ABIE53_005396 0.68 +0.7 1,668,287 + ABIE53_005396 0.68 -0.2 1,668,287 + ABIE53_005396 0.68 -0.2 1,668,287 + ABIE53_005396 0.68 -0.1 1,668,287 + ABIE53_005396 0.68 +2.2 1,668,287 + ABIE53_005396 0.68 +0.0 1,668,287 + ABIE53_005396 0.68 -0.2 1,668,288 - ABIE53_005396 0.68 -0.3 1,668,288 - ABIE53_005396 0.68 -1.2 1,668,288 - ABIE53_005396 0.68 -0.6 1,668,288 - ABIE53_005396 0.68 +1.9 1,668,288 - ABIE53_005396 0.68 -1.0 1,668,288 - ABIE53_005396 0.68 +0.1 1,668,288 - ABIE53_005396 0.68 -0.4 1,668,288 - ABIE53_005396 0.68 +5.5 1,668,288 - ABIE53_005396 0.68 -0.7 1,668,288 - ABIE53_005396 0.68 +0.1 1,668,288 - ABIE53_005396 0.68 +0.3 1,668,476 + +2.2 1,668,477 - +0.1 1,668,477 - +0.0 1,668,477 - +2.0 1,668,564 + -1.7 1,668,618 + -0.7 1,668,618 + -0.3 1,668,618 + -0.2 1,668,618 + -0.0 1,668,619 - -0.9 1,668,619 - +0.6 1,668,619 - -1.2 1,668,619 - +0.6 1,668,619 - -0.2 1,668,619 - +1.6 1,668,619 - -1.2 1,668,619 - -0.3 1,668,619 - +0.6 1,668,619 - -0.7 1,668,619 - -2.8 1,668,619 - -0.7 1,668,619 - +1.9 1,668,620 + +1.6 1,668,642 + -1.2 1,668,643 - +0.6 1,668,643 - +1.4 1,668,686 + ABIE53_005397 0.14 +0.6 1,668,686 + ABIE53_005397 0.14 +0.6 1,668,687 - ABIE53_005397 0.14 -0.5 1,668,806 - ABIE53_005397 0.32 -1.2 1,668,806 - ABIE53_005397 0.32 +0.8 1,668,807 + ABIE53_005397 0.32 +0.6 1,668,807 + ABIE53_005397 0.32 +1.6 1,668,807 + ABIE53_005397 0.32 -0.4 1,668,807 + ABIE53_005397 0.32 +0.5 1,668,807 + ABIE53_005397 0.32 +0.1 1,668,807 + ABIE53_005397 0.32 -0.4 1,668,807 + ABIE53_005397 0.32 -0.4 1,668,807 + ABIE53_005397 0.32 +1.0 1,668,807 + ABIE53_005397 0.32 +1.8 1,668,807 + ABIE53_005397 0.32 -0.2 1,668,808 - ABIE53_005397 0.33 -0.8 1,668,808 - ABIE53_005397 0.33 +1.0 1,668,808 - ABIE53_005397 0.33 +1.0 1,668,837 + ABIE53_005397 0.37 -0.2 1,668,838 - ABIE53_005397 0.37 +2.5 1,668,838 - ABIE53_005397 0.37 +0.1 1,668,838 - ABIE53_005397 0.37 +0.6 1,668,838 - ABIE53_005397 0.37 +1.1 1,669,134 + ABIE53_005397 0.82 +1.3 1,669,134 + ABIE53_005397 0.82 -0.4 1,669,135 - ABIE53_005397 0.82 -1.3 1,669,135 - ABIE53_005397 0.82 -0.7 1,669,135 - ABIE53_005397 0.82 -0.7 1,669,135 - ABIE53_005397 0.82 -2.1 1,669,135 - ABIE53_005397 0.82 -1.7 1,669,135 - ABIE53_005397 0.82 +0.5 1,669,135 - ABIE53_005397 0.82 +0.0 1,669,284 - +1.1 1,669,335 + +2.6 1,669,336 - -1.1 1,669,404 + +0.0 1,669,404 + +0.4 1,669,404 + -0.2 1,669,405 - +0.0 1,669,405 - +0.5 1,669,405 - -0.6 1,669,417 + +0.0 1,669,417 + -0.0 1,669,417 + -0.5 1,669,418 - +1.6 1,669,418 - -0.2
Or see this region's nucleotide sequence