Experiment: KB with Cantharidin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2915 and Psyr_2916 are separated by 160 nucleotides
Psyr_2915: Psyr_2915 - transcriptional regulator, AraC family with amidase-like domain protein, at 3,503,682 to 3,504,659
_2915
Psyr_2916: Psyr_2916 - Substrate-binding region of ABC-type glycine betaine transport system, at 3,504,820 to 3,505,764
_2916
Position (kb)
3503
3504
3505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3502.694 kb on - strand at 3502.699 kb on + strand at 3502.700 kb on - strand at 3502.705 kb on + strand at 3502.735 kb on + strand at 3502.848 kb on + strand at 3502.848 kb on + strand at 3502.848 kb on + strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.853 kb on - strand at 3502.853 kb on - strand at 3502.949 kb on + strand at 3502.950 kb on - strand at 3502.950 kb on - strand at 3502.952 kb on + strand at 3502.952 kb on + strand at 3502.953 kb on - strand at 3503.004 kb on + strand at 3503.005 kb on - strand at 3503.060 kb on + strand at 3503.060 kb on + strand at 3503.060 kb on + strand at 3503.103 kb on + strand at 3503.103 kb on + strand at 3503.162 kb on + strand at 3503.191 kb on + strand at 3503.191 kb on + strand at 3503.192 kb on - strand at 3503.192 kb on - strand at 3503.204 kb on + strand at 3503.204 kb on + strand at 3503.277 kb on + strand at 3503.277 kb on + strand at 3503.277 kb on + strand at 3503.278 kb on - strand at 3503.278 kb on - strand at 3503.278 kb on - strand at 3503.278 kb on - strand at 3503.278 kb on - strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.281 kb on + strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.282 kb on - strand at 3503.306 kb on + strand at 3503.392 kb on + strand at 3503.392 kb on + strand at 3503.392 kb on + strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.394 kb on + strand at 3503.394 kb on + strand at 3503.394 kb on + strand at 3503.395 kb on - strand at 3503.395 kb on - strand at 3503.395 kb on - strand at 3503.395 kb on - strand at 3503.395 kb on - strand at 3503.427 kb on + strand at 3503.427 kb on + strand at 3503.427 kb on + strand at 3503.428 kb on - strand at 3503.428 kb on - strand at 3503.430 kb on - strand at 3503.512 kb on + strand at 3503.512 kb on + strand at 3503.513 kb on - strand at 3503.528 kb on - strand at 3503.535 kb on + strand at 3503.564 kb on - strand at 3503.592 kb on - strand at 3503.592 kb on - strand at 3503.592 kb on - strand at 3503.592 kb on - strand at 3503.618 kb on - strand at 3503.618 kb on - strand at 3503.623 kb on + strand at 3503.623 kb on + strand at 3503.624 kb on - strand at 3503.624 kb on - strand at 3503.624 kb on - strand at 3503.646 kb on + strand at 3503.752 kb on + strand at 3503.753 kb on - strand at 3503.851 kb on + strand, within Psyr_2915 at 3503.852 kb on - strand, within Psyr_2915 at 3504.069 kb on + strand, within Psyr_2915 at 3504.069 kb on + strand, within Psyr_2915 at 3504.070 kb on - strand, within Psyr_2915 at 3504.070 kb on - strand, within Psyr_2915 at 3504.168 kb on - strand, within Psyr_2915 at 3504.572 kb on + strand at 3504.665 kb on + strand at 3504.755 kb on - strand at 3504.884 kb on + strand at 3504.884 kb on + strand at 3504.884 kb on + strand at 3504.884 kb on + strand at 3504.884 kb on + strand at 3504.885 kb on - strand at 3504.885 kb on - strand at 3504.885 kb on - strand at 3504.885 kb on - strand at 3504.930 kb on - strand, within Psyr_2916 at 3505.189 kb on + strand, within Psyr_2916 at 3505.189 kb on + strand, within Psyr_2916 at 3505.189 kb on + strand, within Psyr_2916 at 3505.394 kb on + strand, within Psyr_2916 at 3505.465 kb on + strand, within Psyr_2916 at 3505.465 kb on + strand, within Psyr_2916 at 3505.540 kb on + strand, within Psyr_2916 at 3505.540 kb on + strand, within Psyr_2916 at 3505.540 kb on + strand, within Psyr_2916 at 3505.541 kb on - strand, within Psyr_2916
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM remove 3,502,694 - -0.3 3,502,699 + -1.2 3,502,700 - -0.7 3,502,705 + -2.0 3,502,735 + +1.2 3,502,848 + +1.4 3,502,848 + -0.0 3,502,848 + +0.5 3,502,849 - -0.4 3,502,849 - -2.2 3,502,849 - +0.5 3,502,849 - +0.2 3,502,849 - +0.2 3,502,853 - +0.2 3,502,853 - -0.7 3,502,949 + +0.2 3,502,950 - +0.6 3,502,950 - -0.0 3,502,952 + -1.6 3,502,952 + +0.0 3,502,953 - +0.7 3,503,004 + -1.6 3,503,005 - +1.2 3,503,060 + -1.2 3,503,060 + +0.2 3,503,060 + -0.4 3,503,103 + -1.1 3,503,103 + -1.2 3,503,162 + -1.2 3,503,191 + -1.4 3,503,191 + -1.1 3,503,192 - +0.0 3,503,192 - +0.6 3,503,204 + +0.9 3,503,204 + -2.0 3,503,277 + -0.6 3,503,277 + -1.6 3,503,277 + -2.0 3,503,278 - -0.6 3,503,278 - -1.2 3,503,278 - -1.3 3,503,278 - -1.4 3,503,278 - -0.4 3,503,281 + +1.2 3,503,281 + -1.2 3,503,281 + -1.7 3,503,281 + -1.2 3,503,281 + +0.2 3,503,281 + -0.7 3,503,281 + -1.9 3,503,281 + +0.6 3,503,281 + +1.7 3,503,282 - -0.6 3,503,282 - +0.1 3,503,282 - +1.5 3,503,282 - -1.0 3,503,282 - +0.5 3,503,282 - -1.2 3,503,282 - -0.6 3,503,282 - +1.0 3,503,282 - -2.0 3,503,282 - -0.0 3,503,282 - -0.4 3,503,282 - -0.1 3,503,282 - +0.4 3,503,282 - -1.2 3,503,282 - -2.2 3,503,282 - +0.3 3,503,306 + -0.2 3,503,392 + -2.2 3,503,392 + -0.6 3,503,392 + -0.4 3,503,393 - -0.6 3,503,393 - +1.0 3,503,393 - +0.0 3,503,393 - +1.7 3,503,393 - -1.2 3,503,393 - +2.2 3,503,393 - -1.0 3,503,394 + -1.1 3,503,394 + -0.1 3,503,394 + -1.4 3,503,395 - +0.6 3,503,395 - -0.2 3,503,395 - -0.4 3,503,395 - -2.2 3,503,395 - +0.3 3,503,427 + -1.0 3,503,427 + +0.6 3,503,427 + -1.4 3,503,428 - -0.4 3,503,428 - -0.6 3,503,430 - +0.7 3,503,512 + -1.2 3,503,512 + -1.5 3,503,513 - -1.9 3,503,528 - -0.6 3,503,535 + -0.4 3,503,564 - +0.8 3,503,592 - -1.8 3,503,592 - -1.1 3,503,592 - -0.3 3,503,592 - -1.2 3,503,618 - -1.0 3,503,618 - -0.1 3,503,623 + -1.6 3,503,623 + -2.0 3,503,624 - -0.4 3,503,624 - +2.5 3,503,624 - -1.6 3,503,646 + -0.8 3,503,752 + +0.0 3,503,753 - +0.9 3,503,851 + Psyr_2915 0.17 -0.3 3,503,852 - Psyr_2915 0.17 -0.8 3,504,069 + Psyr_2915 0.40 -1.0 3,504,069 + Psyr_2915 0.40 -1.0 3,504,070 - Psyr_2915 0.40 -0.3 3,504,070 - Psyr_2915 0.40 -1.5 3,504,168 - Psyr_2915 0.50 -0.7 3,504,572 + -0.8 3,504,665 + -2.0 3,504,755 - +0.4 3,504,884 + -0.2 3,504,884 + -1.4 3,504,884 + +1.7 3,504,884 + -0.2 3,504,884 + -1.5 3,504,885 - +0.6 3,504,885 - -0.6 3,504,885 - +0.4 3,504,885 - +1.6 3,504,930 - Psyr_2916 0.12 -1.2 3,505,189 + Psyr_2916 0.39 +1.5 3,505,189 + Psyr_2916 0.39 -0.8 3,505,189 + Psyr_2916 0.39 +1.2 3,505,394 + Psyr_2916 0.61 -0.5 3,505,465 + Psyr_2916 0.68 +1.6 3,505,465 + Psyr_2916 0.68 +0.6 3,505,540 + Psyr_2916 0.76 -1.0 3,505,540 + Psyr_2916 0.76 +0.1 3,505,540 + Psyr_2916 0.76 +0.3 3,505,541 - Psyr_2916 0.76 -0.1
Or see this region's nucleotide sequence