Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2915

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2915 and Psyr_2916 are separated by 160 nucleotides Psyr_2915: Psyr_2915 - transcriptional regulator, AraC family with amidase-like domain protein, at 3,503,682 to 3,504,659 _2915 Psyr_2916: Psyr_2916 - Substrate-binding region of ABC-type glycine betaine transport system, at 3,504,820 to 3,505,764 _2916 Position (kb) 3503 3504 3505Strain fitness (log2 ratio) -2 -1 0 1 2at 3502.694 kb on - strandat 3502.699 kb on + strandat 3502.700 kb on - strandat 3502.705 kb on + strandat 3502.735 kb on + strandat 3502.848 kb on + strandat 3502.848 kb on + strandat 3502.848 kb on + strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.853 kb on - strandat 3502.853 kb on - strandat 3502.949 kb on + strandat 3502.950 kb on - strandat 3502.950 kb on - strandat 3502.952 kb on + strandat 3502.952 kb on + strandat 3502.953 kb on - strandat 3503.004 kb on + strandat 3503.005 kb on - strandat 3503.060 kb on + strandat 3503.060 kb on + strandat 3503.060 kb on + strandat 3503.103 kb on + strandat 3503.103 kb on + strandat 3503.162 kb on + strandat 3503.191 kb on + strandat 3503.191 kb on + strandat 3503.192 kb on - strandat 3503.192 kb on - strandat 3503.204 kb on + strandat 3503.204 kb on + strandat 3503.277 kb on + strandat 3503.277 kb on + strandat 3503.277 kb on + strandat 3503.278 kb on - strandat 3503.278 kb on - strandat 3503.278 kb on - strandat 3503.278 kb on - strandat 3503.278 kb on - strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.281 kb on + strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.282 kb on - strandat 3503.306 kb on + strandat 3503.392 kb on + strandat 3503.392 kb on + strandat 3503.392 kb on + strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.394 kb on + strandat 3503.394 kb on + strandat 3503.394 kb on + strandat 3503.395 kb on - strandat 3503.395 kb on - strandat 3503.395 kb on - strandat 3503.395 kb on - strandat 3503.395 kb on - strandat 3503.427 kb on + strandat 3503.427 kb on + strandat 3503.427 kb on + strandat 3503.428 kb on - strandat 3503.428 kb on - strandat 3503.430 kb on - strandat 3503.512 kb on + strandat 3503.512 kb on + strandat 3503.513 kb on - strandat 3503.528 kb on - strandat 3503.535 kb on + strandat 3503.564 kb on - strandat 3503.592 kb on - strandat 3503.592 kb on - strandat 3503.592 kb on - strandat 3503.592 kb on - strandat 3503.618 kb on - strandat 3503.618 kb on - strandat 3503.623 kb on + strandat 3503.623 kb on + strandat 3503.624 kb on - strandat 3503.624 kb on - strandat 3503.624 kb on - strandat 3503.646 kb on + strandat 3503.752 kb on + strandat 3503.753 kb on - strandat 3503.851 kb on + strand, within Psyr_2915at 3503.852 kb on - strand, within Psyr_2915at 3504.069 kb on + strand, within Psyr_2915at 3504.069 kb on + strand, within Psyr_2915at 3504.070 kb on - strand, within Psyr_2915at 3504.070 kb on - strand, within Psyr_2915at 3504.168 kb on - strand, within Psyr_2915at 3504.572 kb on + strandat 3504.665 kb on + strandat 3504.755 kb on - strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.885 kb on - strandat 3504.885 kb on - strandat 3504.885 kb on - strandat 3504.885 kb on - strandat 3504.930 kb on - strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.394 kb on + strand, within Psyr_2916at 3505.465 kb on + strand, within Psyr_2916at 3505.465 kb on + strand, within Psyr_2916at 3505.540 kb on + strand, within Psyr_2916at 3505.540 kb on + strand, within Psyr_2916at 3505.540 kb on + strand, within Psyr_2916at 3505.541 kb on - strand, within Psyr_2916

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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3,502,694 - -0.3
3,502,699 + -1.2
3,502,700 - -0.7
3,502,705 + -2.0
3,502,735 + +1.2
3,502,848 + +1.4
3,502,848 + -0.0
3,502,848 + +0.5
3,502,849 - -0.4
3,502,849 - -2.2
3,502,849 - +0.5
3,502,849 - +0.2
3,502,849 - +0.2
3,502,853 - +0.2
3,502,853 - -0.7
3,502,949 + +0.2
3,502,950 - +0.6
3,502,950 - -0.0
3,502,952 + -1.6
3,502,952 + +0.0
3,502,953 - +0.7
3,503,004 + -1.6
3,503,005 - +1.2
3,503,060 + -1.2
3,503,060 + +0.2
3,503,060 + -0.4
3,503,103 + -1.1
3,503,103 + -1.2
3,503,162 + -1.2
3,503,191 + -1.4
3,503,191 + -1.1
3,503,192 - +0.0
3,503,192 - +0.6
3,503,204 + +0.9
3,503,204 + -2.0
3,503,277 + -0.6
3,503,277 + -1.6
3,503,277 + -2.0
3,503,278 - -0.6
3,503,278 - -1.2
3,503,278 - -1.3
3,503,278 - -1.4
3,503,278 - -0.4
3,503,281 + +1.2
3,503,281 + -1.2
3,503,281 + -1.7
3,503,281 + -1.2
3,503,281 + +0.2
3,503,281 + -0.7
3,503,281 + -1.9
3,503,281 + +0.6
3,503,281 + +1.7
3,503,282 - -0.6
3,503,282 - +0.1
3,503,282 - +1.5
3,503,282 - -1.0
3,503,282 - +0.5
3,503,282 - -1.2
3,503,282 - -0.6
3,503,282 - +1.0
3,503,282 - -2.0
3,503,282 - -0.0
3,503,282 - -0.4
3,503,282 - -0.1
3,503,282 - +0.4
3,503,282 - -1.2
3,503,282 - -2.2
3,503,282 - +0.3
3,503,306 + -0.2
3,503,392 + -2.2
3,503,392 + -0.6
3,503,392 + -0.4
3,503,393 - -0.6
3,503,393 - +1.0
3,503,393 - +0.0
3,503,393 - +1.7
3,503,393 - -1.2
3,503,393 - +2.2
3,503,393 - -1.0
3,503,394 + -1.1
3,503,394 + -0.1
3,503,394 + -1.4
3,503,395 - +0.6
3,503,395 - -0.2
3,503,395 - -0.4
3,503,395 - -2.2
3,503,395 - +0.3
3,503,427 + -1.0
3,503,427 + +0.6
3,503,427 + -1.4
3,503,428 - -0.4
3,503,428 - -0.6
3,503,430 - +0.7
3,503,512 + -1.2
3,503,512 + -1.5
3,503,513 - -1.9
3,503,528 - -0.6
3,503,535 + -0.4
3,503,564 - +0.8
3,503,592 - -1.8
3,503,592 - -1.1
3,503,592 - -0.3
3,503,592 - -1.2
3,503,618 - -1.0
3,503,618 - -0.1
3,503,623 + -1.6
3,503,623 + -2.0
3,503,624 - -0.4
3,503,624 - +2.5
3,503,624 - -1.6
3,503,646 + -0.8
3,503,752 + +0.0
3,503,753 - +0.9
3,503,851 + Psyr_2915 0.17 -0.3
3,503,852 - Psyr_2915 0.17 -0.8
3,504,069 + Psyr_2915 0.40 -1.0
3,504,069 + Psyr_2915 0.40 -1.0
3,504,070 - Psyr_2915 0.40 -0.3
3,504,070 - Psyr_2915 0.40 -1.5
3,504,168 - Psyr_2915 0.50 -0.7
3,504,572 + -0.8
3,504,665 + -2.0
3,504,755 - +0.4
3,504,884 + -0.2
3,504,884 + -1.4
3,504,884 + +1.7
3,504,884 + -0.2
3,504,884 + -1.5
3,504,885 - +0.6
3,504,885 - -0.6
3,504,885 - +0.4
3,504,885 - +1.6
3,504,930 - Psyr_2916 0.12 -1.2
3,505,189 + Psyr_2916 0.39 +1.5
3,505,189 + Psyr_2916 0.39 -0.8
3,505,189 + Psyr_2916 0.39 +1.2
3,505,394 + Psyr_2916 0.61 -0.5
3,505,465 + Psyr_2916 0.68 +1.6
3,505,465 + Psyr_2916 0.68 +0.6
3,505,540 + Psyr_2916 0.76 -1.0
3,505,540 + Psyr_2916 0.76 +0.1
3,505,540 + Psyr_2916 0.76 +0.3
3,505,541 - Psyr_2916 0.76 -0.1

Or see this region's nucleotide sequence