Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2558

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2557 and Psyr_2558 overlap by 4 nucleotidesPsyr_2558 and Psyr_2559 are separated by 24 nucleotides Psyr_2557: Psyr_2557 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein, at 2,969,817 to 2,971,712 _2557 Psyr_2558: Psyr_2558 - hypothetical protein, at 2,971,709 to 2,972,887 _2558 Psyr_2559: Psyr_2559 - hypothetical protein, at 2,972,912 to 2,974,048 _2559 Position (kb) 2971 2972 2973Strain fitness (log2 ratio) -2 -1 0 1 2at 2970.729 kb on + strand, within Psyr_2557at 2971.016 kb on + strand, within Psyr_2557at 2971.494 kb on + strand, within Psyr_2557at 2971.705 kb on + strandat 2971.705 kb on + strandat 2971.705 kb on + strandat 2971.706 kb on - strandat 2971.706 kb on - strandat 2971.706 kb on - strandat 2971.706 kb on - strandat 2971.706 kb on - strandat 2971.975 kb on + strand, within Psyr_2558at 2971.975 kb on + strand, within Psyr_2558at 2971.975 kb on + strand, within Psyr_2558at 2971.975 kb on + strand, within Psyr_2558at 2971.975 kb on + strand, within Psyr_2558at 2971.976 kb on - strand, within Psyr_2558at 2971.976 kb on - strand, within Psyr_2558at 2971.976 kb on - strand, within Psyr_2558at 2971.976 kb on - strand, within Psyr_2558at 2972.072 kb on + strand, within Psyr_2558at 2972.073 kb on - strand, within Psyr_2558at 2972.073 kb on - strand, within Psyr_2558at 2972.281 kb on - strand, within Psyr_2558at 2972.378 kb on + strand, within Psyr_2558at 2972.378 kb on + strand, within Psyr_2558at 2972.379 kb on - strand, within Psyr_2558at 2972.384 kb on + strand, within Psyr_2558at 2972.385 kb on - strand, within Psyr_2558at 2972.395 kb on + strand, within Psyr_2558at 2972.434 kb on + strand, within Psyr_2558at 2972.435 kb on - strand, within Psyr_2558at 2972.670 kb on - strandat 2972.729 kb on + strand, within Psyr_2558at 2972.941 kb on + strandat 2973.214 kb on + strand, within Psyr_2559at 2973.262 kb on - strand, within Psyr_2559at 2973.392 kb on + strand, within Psyr_2559at 2973.393 kb on - strand, within Psyr_2559at 2973.560 kb on + strand, within Psyr_2559at 2973.560 kb on + strand, within Psyr_2559at 2973.560 kb on + strand, within Psyr_2559at 2973.561 kb on - strand, within Psyr_2559at 2973.564 kb on + strand, within Psyr_2559at 2973.564 kb on + strand, within Psyr_2559at 2973.565 kb on - strand, within Psyr_2559at 2973.565 kb on - strand, within Psyr_2559at 2973.565 kb on - strand, within Psyr_2559at 2973.660 kb on + strand, within Psyr_2559

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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2,970,729 + Psyr_2557 0.48 +0.8
2,971,016 + Psyr_2557 0.63 -0.6
2,971,494 + Psyr_2557 0.88 +0.3
2,971,705 + -0.9
2,971,705 + -0.5
2,971,705 + +0.0
2,971,706 - -1.4
2,971,706 - +0.4
2,971,706 - +0.1
2,971,706 - -2.4
2,971,706 - -1.0
2,971,975 + Psyr_2558 0.23 -0.1
2,971,975 + Psyr_2558 0.23 -0.8
2,971,975 + Psyr_2558 0.23 +0.7
2,971,975 + Psyr_2558 0.23 -0.3
2,971,975 + Psyr_2558 0.23 -0.2
2,971,976 - Psyr_2558 0.23 -0.8
2,971,976 - Psyr_2558 0.23 -0.5
2,971,976 - Psyr_2558 0.23 -0.2
2,971,976 - Psyr_2558 0.23 -2.0
2,972,072 + Psyr_2558 0.31 +0.8
2,972,073 - Psyr_2558 0.31 +0.0
2,972,073 - Psyr_2558 0.31 -1.5
2,972,281 - Psyr_2558 0.49 +0.1
2,972,378 + Psyr_2558 0.57 -1.7
2,972,378 + Psyr_2558 0.57 -0.1
2,972,379 - Psyr_2558 0.57 -0.6
2,972,384 + Psyr_2558 0.57 -1.3
2,972,385 - Psyr_2558 0.57 -1.6
2,972,395 + Psyr_2558 0.58 -0.9
2,972,434 + Psyr_2558 0.61 -0.9
2,972,435 - Psyr_2558 0.62 -0.9
2,972,670 - +1.3
2,972,729 + Psyr_2558 0.87 +0.2
2,972,941 + +1.3
2,973,214 + Psyr_2559 0.27 -0.5
2,973,262 - Psyr_2559 0.31 +0.3
2,973,392 + Psyr_2559 0.42 +0.4
2,973,393 - Psyr_2559 0.42 +2.2
2,973,560 + Psyr_2559 0.57 -1.4
2,973,560 + Psyr_2559 0.57 +0.1
2,973,560 + Psyr_2559 0.57 -0.0
2,973,561 - Psyr_2559 0.57 +1.3
2,973,564 + Psyr_2559 0.57 +0.8
2,973,564 + Psyr_2559 0.57 +0.5
2,973,565 - Psyr_2559 0.57 -0.5
2,973,565 - Psyr_2559 0.57 -0.7
2,973,565 - Psyr_2559 0.57 -0.4
2,973,660 + Psyr_2559 0.66 +1.6

Or see this region's nucleotide sequence