Experiment: KB with Cantharidin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2557 and Psyr_2558 overlap by 4 nucleotides Psyr_2558 and Psyr_2559 are separated by 24 nucleotides
Psyr_2557: Psyr_2557 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein, at 2,969,817 to 2,971,712
_2557
Psyr_2558: Psyr_2558 - hypothetical protein, at 2,971,709 to 2,972,887
_2558
Psyr_2559: Psyr_2559 - hypothetical protein, at 2,972,912 to 2,974,048
_2559
Position (kb)
2971
2972
2973 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2970.729 kb on + strand, within Psyr_2557 at 2971.016 kb on + strand, within Psyr_2557 at 2971.494 kb on + strand, within Psyr_2557 at 2971.705 kb on + strand at 2971.705 kb on + strand at 2971.705 kb on + strand at 2971.706 kb on - strand at 2971.706 kb on - strand at 2971.706 kb on - strand at 2971.706 kb on - strand at 2971.706 kb on - strand at 2971.975 kb on + strand, within Psyr_2558 at 2971.975 kb on + strand, within Psyr_2558 at 2971.975 kb on + strand, within Psyr_2558 at 2971.975 kb on + strand, within Psyr_2558 at 2971.975 kb on + strand, within Psyr_2558 at 2971.976 kb on - strand, within Psyr_2558 at 2971.976 kb on - strand, within Psyr_2558 at 2971.976 kb on - strand, within Psyr_2558 at 2971.976 kb on - strand, within Psyr_2558 at 2972.072 kb on + strand, within Psyr_2558 at 2972.073 kb on - strand, within Psyr_2558 at 2972.073 kb on - strand, within Psyr_2558 at 2972.281 kb on - strand, within Psyr_2558 at 2972.378 kb on + strand, within Psyr_2558 at 2972.378 kb on + strand, within Psyr_2558 at 2972.379 kb on - strand, within Psyr_2558 at 2972.384 kb on + strand, within Psyr_2558 at 2972.385 kb on - strand, within Psyr_2558 at 2972.395 kb on + strand, within Psyr_2558 at 2972.434 kb on + strand, within Psyr_2558 at 2972.435 kb on - strand, within Psyr_2558 at 2972.670 kb on - strand at 2972.729 kb on + strand, within Psyr_2558 at 2972.941 kb on + strand at 2973.214 kb on + strand, within Psyr_2559 at 2973.262 kb on - strand, within Psyr_2559 at 2973.392 kb on + strand, within Psyr_2559 at 2973.393 kb on - strand, within Psyr_2559 at 2973.560 kb on + strand, within Psyr_2559 at 2973.560 kb on + strand, within Psyr_2559 at 2973.560 kb on + strand, within Psyr_2559 at 2973.561 kb on - strand, within Psyr_2559 at 2973.564 kb on + strand, within Psyr_2559 at 2973.564 kb on + strand, within Psyr_2559 at 2973.565 kb on - strand, within Psyr_2559 at 2973.565 kb on - strand, within Psyr_2559 at 2973.565 kb on - strand, within Psyr_2559 at 2973.660 kb on + strand, within Psyr_2559
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM remove 2,970,729 + Psyr_2557 0.48 +0.8 2,971,016 + Psyr_2557 0.63 -0.6 2,971,494 + Psyr_2557 0.88 +0.3 2,971,705 + -0.9 2,971,705 + -0.5 2,971,705 + +0.0 2,971,706 - -1.4 2,971,706 - +0.4 2,971,706 - +0.1 2,971,706 - -2.4 2,971,706 - -1.0 2,971,975 + Psyr_2558 0.23 -0.1 2,971,975 + Psyr_2558 0.23 -0.8 2,971,975 + Psyr_2558 0.23 +0.7 2,971,975 + Psyr_2558 0.23 -0.3 2,971,975 + Psyr_2558 0.23 -0.2 2,971,976 - Psyr_2558 0.23 -0.8 2,971,976 - Psyr_2558 0.23 -0.5 2,971,976 - Psyr_2558 0.23 -0.2 2,971,976 - Psyr_2558 0.23 -2.0 2,972,072 + Psyr_2558 0.31 +0.8 2,972,073 - Psyr_2558 0.31 +0.0 2,972,073 - Psyr_2558 0.31 -1.5 2,972,281 - Psyr_2558 0.49 +0.1 2,972,378 + Psyr_2558 0.57 -1.7 2,972,378 + Psyr_2558 0.57 -0.1 2,972,379 - Psyr_2558 0.57 -0.6 2,972,384 + Psyr_2558 0.57 -1.3 2,972,385 - Psyr_2558 0.57 -1.6 2,972,395 + Psyr_2558 0.58 -0.9 2,972,434 + Psyr_2558 0.61 -0.9 2,972,435 - Psyr_2558 0.62 -0.9 2,972,670 - +1.3 2,972,729 + Psyr_2558 0.87 +0.2 2,972,941 + +1.3 2,973,214 + Psyr_2559 0.27 -0.5 2,973,262 - Psyr_2559 0.31 +0.3 2,973,392 + Psyr_2559 0.42 +0.4 2,973,393 - Psyr_2559 0.42 +2.2 2,973,560 + Psyr_2559 0.57 -1.4 2,973,560 + Psyr_2559 0.57 +0.1 2,973,560 + Psyr_2559 0.57 -0.0 2,973,561 - Psyr_2559 0.57 +1.3 2,973,564 + Psyr_2559 0.57 +0.8 2,973,564 + Psyr_2559 0.57 +0.5 2,973,565 - Psyr_2559 0.57 -0.5 2,973,565 - Psyr_2559 0.57 -0.7 2,973,565 - Psyr_2559 0.57 -0.4 2,973,660 + Psyr_2559 0.66 +1.6
Or see this region's nucleotide sequence