Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1980

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1979 and Psyr_1980 are separated by 129 nucleotidesPsyr_1980 and Psyr_1981 are separated by 67 nucleotides Psyr_1979: Psyr_1979 - tRNA-U20a,U20b-dihydrouridine synthase, at 2,297,844 to 2,298,809 _1979 Psyr_1980: Psyr_1980 - Heat shock protein Hsp20, at 2,298,939 to 2,299,382 _1980 Psyr_1981: Psyr_1981 - PAS:GGDEF, at 2,299,450 to 2,301,642 _1981 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -2 -1 0 1 2at 2297.977 kb on - strand, within Psyr_1979at 2297.977 kb on - strand, within Psyr_1979at 2297.977 kb on - strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.988 kb on + strand, within Psyr_1979at 2297.988 kb on + strand, within Psyr_1979at 2297.988 kb on + strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2298.029 kb on + strand, within Psyr_1979at 2298.244 kb on + strand, within Psyr_1979at 2298.369 kb on + strand, within Psyr_1979at 2298.369 kb on + strand, within Psyr_1979at 2298.731 kb on + strandat 2298.731 kb on + strandat 2298.731 kb on + strandat 2298.732 kb on - strandat 2298.732 kb on - strandat 2298.769 kb on + strandat 2298.770 kb on - strandat 2298.770 kb on - strandat 2298.870 kb on + strandat 2298.871 kb on - strandat 2298.908 kb on - strandat 2298.944 kb on + strandat 2298.945 kb on - strandat 2299.053 kb on + strand, within Psyr_1980at 2299.053 kb on + strand, within Psyr_1980at 2299.054 kb on - strand, within Psyr_1980at 2299.200 kb on + strand, within Psyr_1980at 2299.201 kb on - strand, within Psyr_1980at 2299.201 kb on - strand, within Psyr_1980at 2299.201 kb on - strand, within Psyr_1980at 2299.259 kb on + strand, within Psyr_1980at 2299.413 kb on + strandat 2299.414 kb on - strandat 2299.538 kb on + strandat 2299.547 kb on + strandat 2299.547 kb on + strandat 2299.547 kb on - strandat 2299.548 kb on - strandat 2299.548 kb on - strandat 2299.548 kb on - strandat 2299.553 kb on + strandat 2299.554 kb on - strandat 2299.554 kb on - strandat 2299.742 kb on + strand, within Psyr_1981at 2299.742 kb on + strand, within Psyr_1981at 2299.742 kb on + strand, within Psyr_1981at 2299.742 kb on + strand, within Psyr_1981at 2299.742 kb on + strand, within Psyr_1981at 2299.743 kb on - strand, within Psyr_1981at 2299.743 kb on - strand, within Psyr_1981at 2299.851 kb on + strand, within Psyr_1981at 2299.852 kb on - strand, within Psyr_1981at 2299.960 kb on - strand, within Psyr_1981at 2300.043 kb on + strand, within Psyr_1981at 2300.043 kb on + strand, within Psyr_1981at 2300.044 kb on - strand, within Psyr_1981at 2300.083 kb on + strand, within Psyr_1981at 2300.083 kb on + strand, within Psyr_1981at 2300.083 kb on + strand, within Psyr_1981at 2300.084 kb on - strand, within Psyr_1981at 2300.084 kb on - strand, within Psyr_1981at 2300.084 kb on - strand, within Psyr_1981at 2300.117 kb on + strand, within Psyr_1981at 2300.162 kb on + strand, within Psyr_1981at 2300.162 kb on + strand, within Psyr_1981at 2300.162 kb on + strand, within Psyr_1981at 2300.162 kb on + strand, within Psyr_1981at 2300.162 kb on + strand, within Psyr_1981at 2300.163 kb on - strand, within Psyr_1981at 2300.163 kb on - strand, within Psyr_1981at 2300.163 kb on - strand, within Psyr_1981at 2300.163 kb on - strand, within Psyr_1981at 2300.163 kb on - strand, within Psyr_1981at 2300.163 kb on - strand, within Psyr_1981

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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2,297,977 - Psyr_1979 0.14 +1.4
2,297,977 - Psyr_1979 0.14 +1.3
2,297,977 - Psyr_1979 0.14 -1.7
2,297,982 + Psyr_1979 0.14 -1.2
2,297,982 + Psyr_1979 0.14 -0.5
2,297,982 + Psyr_1979 0.14 -0.3
2,297,982 + Psyr_1979 0.14 +1.3
2,297,982 + Psyr_1979 0.14 +0.4
2,297,982 + Psyr_1979 0.14 -0.2
2,297,983 - Psyr_1979 0.14 -1.1
2,297,983 - Psyr_1979 0.14 -1.3
2,297,983 - Psyr_1979 0.14 -0.3
2,297,983 - Psyr_1979 0.14 -0.4
2,297,983 - Psyr_1979 0.14 -0.9
2,297,988 + Psyr_1979 0.15 -1.1
2,297,988 + Psyr_1979 0.15 +1.1
2,297,988 + Psyr_1979 0.15 -1.0
2,297,989 - Psyr_1979 0.15 +1.3
2,297,989 - Psyr_1979 0.15 -0.0
2,297,989 - Psyr_1979 0.15 +1.0
2,297,989 - Psyr_1979 0.15 -0.1
2,297,989 - Psyr_1979 0.15 +0.3
2,298,029 + Psyr_1979 0.19 +0.1
2,298,244 + Psyr_1979 0.41 +2.1
2,298,369 + Psyr_1979 0.54 +2.5
2,298,369 + Psyr_1979 0.54 +0.1
2,298,731 + +0.1
2,298,731 + -0.6
2,298,731 + -0.6
2,298,732 - +0.1
2,298,732 - +0.6
2,298,769 + -2.3
2,298,770 - -0.1
2,298,770 - -0.7
2,298,870 + -0.6
2,298,871 - -0.8
2,298,908 - -0.2
2,298,944 + +0.3
2,298,945 - +1.8
2,299,053 + Psyr_1980 0.26 -1.2
2,299,053 + Psyr_1980 0.26 +0.9
2,299,054 - Psyr_1980 0.26 -1.0
2,299,200 + Psyr_1980 0.59 -1.0
2,299,201 - Psyr_1980 0.59 -1.2
2,299,201 - Psyr_1980 0.59 -0.9
2,299,201 - Psyr_1980 0.59 -0.7
2,299,259 + Psyr_1980 0.72 +0.6
2,299,413 + -0.6
2,299,414 - -1.8
2,299,538 + +0.9
2,299,547 + -0.2
2,299,547 + -1.1
2,299,547 - +0.2
2,299,548 - +0.3
2,299,548 - -1.0
2,299,548 - -0.8
2,299,553 + -0.0
2,299,554 - +0.8
2,299,554 - +1.0
2,299,742 + Psyr_1981 0.13 -0.8
2,299,742 + Psyr_1981 0.13 -0.1
2,299,742 + Psyr_1981 0.13 -1.2
2,299,742 + Psyr_1981 0.13 +0.2
2,299,742 + Psyr_1981 0.13 -0.2
2,299,743 - Psyr_1981 0.13 -0.4
2,299,743 - Psyr_1981 0.13 -0.5
2,299,851 + Psyr_1981 0.18 +0.0
2,299,852 - Psyr_1981 0.18 -1.7
2,299,960 - Psyr_1981 0.23 +1.3
2,300,043 + Psyr_1981 0.27 +0.3
2,300,043 + Psyr_1981 0.27 -0.3
2,300,044 - Psyr_1981 0.27 -0.1
2,300,083 + Psyr_1981 0.29 -0.2
2,300,083 + Psyr_1981 0.29 +0.1
2,300,083 + Psyr_1981 0.29 +0.5
2,300,084 - Psyr_1981 0.29 +0.8
2,300,084 - Psyr_1981 0.29 -0.5
2,300,084 - Psyr_1981 0.29 +0.5
2,300,117 + Psyr_1981 0.30 +0.1
2,300,162 + Psyr_1981 0.32 -0.1
2,300,162 + Psyr_1981 0.32 +1.1
2,300,162 + Psyr_1981 0.32 -2.2
2,300,162 + Psyr_1981 0.32 +0.6
2,300,162 + Psyr_1981 0.32 -0.4
2,300,163 - Psyr_1981 0.33 +1.4
2,300,163 - Psyr_1981 0.33 +0.0
2,300,163 - Psyr_1981 0.33 -0.4
2,300,163 - Psyr_1981 0.33 +0.4
2,300,163 - Psyr_1981 0.33 +0.1
2,300,163 - Psyr_1981 0.33 +0.2

Or see this region's nucleotide sequence