Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1509

Experiment: KB with Cantharidin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1508 and Psyr_1509 are separated by 558 nucleotidesPsyr_1509 and Psyr_1510 are separated by 31 nucleotides Psyr_1508: Psyr_1508 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 1,694,121 to 1,695,080 _1508 Psyr_1509: Psyr_1509 - PilM protein, putative, at 1,695,639 to 1,696,079 _1509 Psyr_1510: Psyr_1510 - prepilin, at 1,696,111 to 1,697,517 _1510 Position (kb) 1695 1696 1697Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1694.678 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.750 kb on + strand, within Psyr_1508at 1694.751 kb on - strand, within Psyr_1508at 1694.751 kb on - strand, within Psyr_1508at 1694.751 kb on - strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.754 kb on + strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.755 kb on - strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.760 kb on + strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.761 kb on - strand, within Psyr_1508at 1694.762 kb on + strand, within Psyr_1508at 1694.762 kb on + strand, within Psyr_1508at 1694.762 kb on + strand, within Psyr_1508at 1694.763 kb on - strand, within Psyr_1508at 1694.763 kb on - strand, within Psyr_1508at 1694.807 kb on + strand, within Psyr_1508at 1694.808 kb on - strand, within Psyr_1508at 1694.859 kb on + strand, within Psyr_1508at 1694.859 kb on + strand, within Psyr_1508at 1694.860 kb on - strand, within Psyr_1508at 1694.860 kb on - strand, within Psyr_1508at 1694.860 kb on - strand, within Psyr_1508at 1694.860 kb on - strand, within Psyr_1508at 1694.862 kb on - strand, within Psyr_1508at 1694.862 kb on - strand, within Psyr_1508at 1694.862 kb on - strand, within Psyr_1508at 1694.943 kb on - strand, within Psyr_1508at 1695.024 kb on + strandat 1695.024 kb on + strandat 1695.024 kb on + strandat 1695.025 kb on - strandat 1695.025 kb on - strandat 1695.025 kb on - strandat 1695.025 kb on - strandat 1695.065 kb on + strandat 1695.075 kb on + strandat 1695.075 kb on + strandat 1695.114 kb on - strandat 1695.131 kb on + strandat 1695.132 kb on - strandat 1695.132 kb on - strandat 1695.132 kb on - strandat 1695.140 kb on + strandat 1695.140 kb on + strandat 1695.140 kb on + strandat 1695.144 kb on + strandat 1695.144 kb on + strandat 1695.144 kb on + strandat 1695.144 kb on + strandat 1695.145 kb on - strandat 1695.185 kb on + strandat 1695.185 kb on + strandat 1695.186 kb on - strandat 1695.210 kb on + strandat 1695.211 kb on - strandat 1695.211 kb on - strandat 1695.211 kb on - strandat 1695.242 kb on + strandat 1695.242 kb on + strandat 1695.248 kb on + strandat 1695.249 kb on - strandat 1695.249 kb on - strandat 1695.347 kb on + strandat 1695.347 kb on + strandat 1695.347 kb on + strandat 1695.347 kb on + strandat 1695.348 kb on - strandat 1695.348 kb on - strandat 1695.348 kb on - strandat 1695.405 kb on + strandat 1695.414 kb on + strandat 1695.415 kb on - strandat 1695.432 kb on + strandat 1695.433 kb on - strandat 1695.433 kb on - strandat 1695.446 kb on - strandat 1695.494 kb on + strandat 1695.495 kb on - strandat 1695.495 kb on - strandat 1695.554 kb on + strandat 1695.555 kb on - strandat 1695.568 kb on + strandat 1695.569 kb on - strandat 1695.569 kb on - strandat 1695.669 kb on + strandat 1695.814 kb on + strand, within Psyr_1509at 1695.814 kb on + strand, within Psyr_1509at 1695.863 kb on - strand, within Psyr_1509at 1695.922 kb on + strand, within Psyr_1509at 1695.922 kb on + strand, within Psyr_1509at 1695.922 kb on + strand, within Psyr_1509at 1695.923 kb on - strand, within Psyr_1509at 1695.923 kb on - strand, within Psyr_1509at 1695.928 kb on + strand, within Psyr_1509at 1695.950 kb on - strand, within Psyr_1509at 1695.962 kb on + strand, within Psyr_1509at 1695.963 kb on - strand, within Psyr_1509at 1695.963 kb on - strand, within Psyr_1509at 1695.984 kb on + strand, within Psyr_1509at 1696.025 kb on - strand, within Psyr_1509at 1696.046 kb on + strandat 1696.046 kb on + strandat 1696.069 kb on + strandat 1696.082 kb on + strandat 1696.082 kb on + strandat 1696.082 kb on + strandat 1696.083 kb on - strandat 1696.083 kb on - strandat 1696.083 kb on - strandat 1696.083 kb on - strandat 1696.083 kb on - strandat 1696.100 kb on + strandat 1696.100 kb on + strandat 1696.100 kb on + strandat 1696.100 kb on + strandat 1696.100 kb on + strandat 1696.101 kb on - strandat 1696.101 kb on - strandat 1696.101 kb on - strandat 1696.101 kb on - strandat 1696.101 kb on - strandat 1696.101 kb on - strandat 1696.220 kb on + strandat 1696.220 kb on + strandat 1696.238 kb on + strandat 1696.238 kb on + strandat 1696.238 kb on + strandat 1696.238 kb on + strandat 1696.238 kb on + strandat 1696.238 kb on + strandat 1696.239 kb on - strandat 1696.239 kb on - strandat 1696.239 kb on - strandat 1696.242 kb on + strandat 1696.242 kb on + strandat 1696.243 kb on - strandat 1696.369 kb on - strand, within Psyr_1510at 1696.369 kb on - strand, within Psyr_1510at 1696.421 kb on + strand, within Psyr_1510at 1696.422 kb on - strand, within Psyr_1510at 1696.485 kb on - strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.560 kb on - strand, within Psyr_1510at 1696.667 kb on + strand, within Psyr_1510at 1696.667 kb on + strand, within Psyr_1510at 1696.668 kb on - strand, within Psyr_1510at 1696.668 kb on - strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.800 kb on + strand, within Psyr_1510at 1696.800 kb on + strand, within Psyr_1510at 1696.800 kb on + strand, within Psyr_1510at 1696.801 kb on - strand, within Psyr_1510at 1696.801 kb on - strand, within Psyr_1510at 1696.929 kb on - strand, within Psyr_1510at 1697.000 kb on + strand, within Psyr_1510at 1697.000 kb on + strand, within Psyr_1510at 1697.001 kb on - strand, within Psyr_1510at 1697.001 kb on - strand, within Psyr_1510at 1697.032 kb on + strand, within Psyr_1510at 1697.032 kb on + strand, within Psyr_1510

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM
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1,694,678 + Psyr_1508 0.58 -0.2
1,694,750 + Psyr_1508 0.66 -0.4
1,694,750 + Psyr_1508 0.66 -1.2
1,694,750 + Psyr_1508 0.66 +0.4
1,694,750 + Psyr_1508 0.66 +0.6
1,694,750 + Psyr_1508 0.66 -0.6
1,694,750 + Psyr_1508 0.66 +1.4
1,694,750 + Psyr_1508 0.66 +1.4
1,694,750 + Psyr_1508 0.66 +0.0
1,694,751 - Psyr_1508 0.66 -0.9
1,694,751 - Psyr_1508 0.66 -0.0
1,694,751 - Psyr_1508 0.66 -0.8
1,694,754 + Psyr_1508 0.66 -0.2
1,694,754 + Psyr_1508 0.66 +0.0
1,694,754 + Psyr_1508 0.66 -0.4
1,694,754 + Psyr_1508 0.66 -1.3
1,694,754 + Psyr_1508 0.66 +0.1
1,694,754 + Psyr_1508 0.66 -0.2
1,694,754 + Psyr_1508 0.66 +1.2
1,694,754 + Psyr_1508 0.66 -0.3
1,694,755 - Psyr_1508 0.66 +1.0
1,694,755 - Psyr_1508 0.66 -0.3
1,694,755 - Psyr_1508 0.66 +0.5
1,694,755 - Psyr_1508 0.66 -1.0
1,694,755 - Psyr_1508 0.66 +0.5
1,694,755 - Psyr_1508 0.66 -1.9
1,694,755 - Psyr_1508 0.66 -0.3
1,694,755 - Psyr_1508 0.66 +0.8
1,694,760 + Psyr_1508 0.67 -0.4
1,694,760 + Psyr_1508 0.67 +0.1
1,694,760 + Psyr_1508 0.67 -0.1
1,694,760 + Psyr_1508 0.67 -0.2
1,694,760 + Psyr_1508 0.67 +0.2
1,694,760 + Psyr_1508 0.67 +0.4
1,694,760 + Psyr_1508 0.67 -0.9
1,694,760 + Psyr_1508 0.67 +0.7
1,694,760 + Psyr_1508 0.67 +0.1
1,694,760 + Psyr_1508 0.67 -1.3
1,694,760 + Psyr_1508 0.67 -0.4
1,694,760 + Psyr_1508 0.67 +0.1
1,694,760 + Psyr_1508 0.67 -0.1
1,694,760 + Psyr_1508 0.67 -0.0
1,694,760 + Psyr_1508 0.67 +0.6
1,694,761 - Psyr_1508 0.67 +0.6
1,694,761 - Psyr_1508 0.67 +0.6
1,694,761 - Psyr_1508 0.67 +0.6
1,694,761 - Psyr_1508 0.67 +1.1
1,694,761 - Psyr_1508 0.67 -0.1
1,694,761 - Psyr_1508 0.67 -0.1
1,694,761 - Psyr_1508 0.67 -0.3
1,694,761 - Psyr_1508 0.67 -0.4
1,694,761 - Psyr_1508 0.67 +0.8
1,694,761 - Psyr_1508 0.67 +3.6
1,694,761 - Psyr_1508 0.67 -0.6
1,694,761 - Psyr_1508 0.67 +0.5
1,694,761 - Psyr_1508 0.67 -0.8
1,694,761 - Psyr_1508 0.67 -0.2
1,694,761 - Psyr_1508 0.67 +0.3
1,694,761 - Psyr_1508 0.67 +0.6
1,694,761 - Psyr_1508 0.67 -0.9
1,694,762 + Psyr_1508 0.67 -0.7
1,694,762 + Psyr_1508 0.67 -0.0
1,694,762 + Psyr_1508 0.67 -0.4
1,694,763 - Psyr_1508 0.67 +0.3
1,694,763 - Psyr_1508 0.67 +0.9
1,694,807 + Psyr_1508 0.71 +0.4
1,694,808 - Psyr_1508 0.72 -0.6
1,694,859 + Psyr_1508 0.77 +1.1
1,694,859 + Psyr_1508 0.77 +0.2
1,694,860 - Psyr_1508 0.77 +0.1
1,694,860 - Psyr_1508 0.77 -0.6
1,694,860 - Psyr_1508 0.77 +0.8
1,694,860 - Psyr_1508 0.77 -1.0
1,694,862 - Psyr_1508 0.77 -0.1
1,694,862 - Psyr_1508 0.77 -0.7
1,694,862 - Psyr_1508 0.77 +0.4
1,694,943 - Psyr_1508 0.86 -0.1
1,695,024 + +0.8
1,695,024 + -0.0
1,695,024 + -0.4
1,695,025 - -0.9
1,695,025 - +0.5
1,695,025 - +0.0
1,695,025 - +0.6
1,695,065 + +1.0
1,695,075 + +0.4
1,695,075 + +0.9
1,695,114 - +0.8
1,695,131 + -0.6
1,695,132 - +0.2
1,695,132 - +0.2
1,695,132 - +0.2
1,695,140 + +0.5
1,695,140 + -1.3
1,695,140 + -0.8
1,695,144 + +0.8
1,695,144 + +0.2
1,695,144 + +0.4
1,695,144 + -0.2
1,695,145 - +1.2
1,695,185 + -1.1
1,695,185 + -0.1
1,695,186 - -1.4
1,695,210 + -0.1
1,695,211 - +1.1
1,695,211 - -0.4
1,695,211 - +0.7
1,695,242 + -0.4
1,695,242 + -1.4
1,695,248 + +0.4
1,695,249 - +0.6
1,695,249 - -0.3
1,695,347 + +0.1
1,695,347 + +0.9
1,695,347 + -0.6
1,695,347 + +0.0
1,695,348 - -0.6
1,695,348 - +0.6
1,695,348 - -1.0
1,695,405 + -1.3
1,695,414 + -0.8
1,695,415 - +1.1
1,695,432 + +0.2
1,695,433 - -0.1
1,695,433 - +0.5
1,695,446 - -1.4
1,695,494 + -0.4
1,695,495 - -0.2
1,695,495 - -0.6
1,695,554 + +0.3
1,695,555 - -0.5
1,695,568 + +0.6
1,695,569 - +0.2
1,695,569 - -0.6
1,695,669 + -1.7
1,695,814 + Psyr_1509 0.40 -0.6
1,695,814 + Psyr_1509 0.40 -0.7
1,695,863 - Psyr_1509 0.51 -1.0
1,695,922 + Psyr_1509 0.64 -0.5
1,695,922 + Psyr_1509 0.64 -0.9
1,695,922 + Psyr_1509 0.64 -0.5
1,695,923 - Psyr_1509 0.64 -1.4
1,695,923 - Psyr_1509 0.64 -0.7
1,695,928 + Psyr_1509 0.66 -0.1
1,695,950 - Psyr_1509 0.71 -1.3
1,695,962 + Psyr_1509 0.73 +0.6
1,695,963 - Psyr_1509 0.73 -1.6
1,695,963 - Psyr_1509 0.73 +0.2
1,695,984 + Psyr_1509 0.78 -1.3
1,696,025 - Psyr_1509 0.88 -0.2
1,696,046 + -1.6
1,696,046 + -0.6
1,696,069 + -1.4
1,696,082 + -0.6
1,696,082 + -1.4
1,696,082 + -0.4
1,696,083 - -0.7
1,696,083 - -0.0
1,696,083 - -0.2
1,696,083 - -0.8
1,696,083 - -2.5
1,696,100 + +1.2
1,696,100 + -0.8
1,696,100 + -1.0
1,696,100 + -1.1
1,696,100 + +0.4
1,696,101 - +0.6
1,696,101 - +0.1
1,696,101 - +0.5
1,696,101 - +0.2
1,696,101 - -1.9
1,696,101 - -2.6
1,696,220 + -1.1
1,696,220 + +1.1
1,696,238 + -0.0
1,696,238 + -1.8
1,696,238 + -2.7
1,696,238 + +0.8
1,696,238 + -3.1
1,696,238 + +1.2
1,696,239 - -0.4
1,696,239 - +1.1
1,696,239 - -0.8
1,696,242 + -0.8
1,696,242 + -1.1
1,696,243 - -1.2
1,696,369 - Psyr_1510 0.18 -0.0
1,696,369 - Psyr_1510 0.18 -1.7
1,696,421 + Psyr_1510 0.22 +0.2
1,696,422 - Psyr_1510 0.22 +0.3
1,696,485 - Psyr_1510 0.27 +2.4
1,696,532 + Psyr_1510 0.30 -1.4
1,696,532 + Psyr_1510 0.30 +0.2
1,696,532 + Psyr_1510 0.30 +1.2
1,696,532 + Psyr_1510 0.30 -0.8
1,696,532 + Psyr_1510 0.30 +0.8
1,696,532 + Psyr_1510 0.30 -0.8
1,696,533 - Psyr_1510 0.30 -1.1
1,696,533 - Psyr_1510 0.30 +0.6
1,696,533 - Psyr_1510 0.30 +0.1
1,696,533 - Psyr_1510 0.30 -0.7
1,696,533 - Psyr_1510 0.30 +0.2
1,696,533 - Psyr_1510 0.30 +0.7
1,696,560 - Psyr_1510 0.32 +0.5
1,696,667 + Psyr_1510 0.40 -0.4
1,696,667 + Psyr_1510 0.40 -0.2
1,696,668 - Psyr_1510 0.40 +0.8
1,696,668 - Psyr_1510 0.40 +0.6
1,696,669 + Psyr_1510 0.40 +0.9
1,696,669 + Psyr_1510 0.40 -0.6
1,696,669 + Psyr_1510 0.40 +0.1
1,696,669 + Psyr_1510 0.40 +0.2
1,696,669 + Psyr_1510 0.40 +0.3
1,696,669 + Psyr_1510 0.40 -0.6
1,696,669 + Psyr_1510 0.40 -0.3
1,696,669 + Psyr_1510 0.40 -0.4
1,696,669 + Psyr_1510 0.40 -0.1
1,696,669 + Psyr_1510 0.40 -0.4
1,696,669 + Psyr_1510 0.40 +0.6
1,696,669 + Psyr_1510 0.40 +0.1
1,696,670 - Psyr_1510 0.40 +0.0
1,696,670 - Psyr_1510 0.40 -0.5
1,696,670 - Psyr_1510 0.40 -0.6
1,696,670 - Psyr_1510 0.40 +0.2
1,696,670 - Psyr_1510 0.40 +0.7
1,696,670 - Psyr_1510 0.40 +0.7
1,696,670 - Psyr_1510 0.40 -0.5
1,696,670 - Psyr_1510 0.40 +2.0
1,696,670 - Psyr_1510 0.40 -0.7
1,696,670 - Psyr_1510 0.40 +0.1
1,696,670 - Psyr_1510 0.40 +0.2
1,696,670 - Psyr_1510 0.40 -0.4
1,696,670 - Psyr_1510 0.40 -0.2
1,696,670 - Psyr_1510 0.40 -1.8
1,696,670 - Psyr_1510 0.40 -0.2
1,696,670 - Psyr_1510 0.40 -0.9
1,696,670 - Psyr_1510 0.40 -0.5
1,696,800 + Psyr_1510 0.49 +0.0
1,696,800 + Psyr_1510 0.49 +0.9
1,696,800 + Psyr_1510 0.49 -0.4
1,696,801 - Psyr_1510 0.49 +0.9
1,696,801 - Psyr_1510 0.49 -1.7
1,696,929 - Psyr_1510 0.58 +1.2
1,697,000 + Psyr_1510 0.63 +0.6
1,697,000 + Psyr_1510 0.63 -2.8
1,697,001 - Psyr_1510 0.63 +0.1
1,697,001 - Psyr_1510 0.63 +0.6
1,697,032 + Psyr_1510 0.65 +0.2
1,697,032 + Psyr_1510 0.65 -0.2

Or see this region's nucleotide sequence