Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26055

Experiment: 2'-Deoxycytidine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS26045 and BWI76_RS26050 are separated by 67 nucleotidesBWI76_RS26050 and BWI76_RS26055 are separated by 11 nucleotidesBWI76_RS26055 and BWI76_RS26060 are separated by 89 nucleotides BWI76_RS26045: BWI76_RS26045 - nitrite reductase small subunit, at 5,382,751 to 5,383,077 _RS26045 BWI76_RS26050: BWI76_RS26050 - nitrite transporter NirC, at 5,383,145 to 5,383,954 _RS26050 BWI76_RS26055: BWI76_RS26055 - siroheme synthase, at 5,383,966 to 5,385,339 _RS26055 BWI76_RS26060: BWI76_RS26060 - tryptophan--tRNA ligase, at 5,385,429 to 5,386,433 _RS26060 Position (kb) 5383 5384 5385 5386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5383.007 kb on - strand, within BWI76_RS26045at 5383.017 kb on - strand, within BWI76_RS26045at 5383.124 kb on + strandat 5383.182 kb on - strandat 5383.182 kb on - strandat 5383.254 kb on + strand, within BWI76_RS26050at 5383.262 kb on - strand, within BWI76_RS26050at 5383.346 kb on + strand, within BWI76_RS26050at 5383.354 kb on - strand, within BWI76_RS26050at 5383.436 kb on - strand, within BWI76_RS26050at 5383.447 kb on - strand, within BWI76_RS26050at 5383.629 kb on - strand, within BWI76_RS26050at 5383.703 kb on + strand, within BWI76_RS26050at 5383.765 kb on + strand, within BWI76_RS26050at 5383.773 kb on - strand, within BWI76_RS26050at 5383.773 kb on - strand, within BWI76_RS26050at 5383.791 kb on + strand, within BWI76_RS26050at 5383.791 kb on + strand, within BWI76_RS26050at 5383.798 kb on - strand, within BWI76_RS26050at 5383.827 kb on + strand, within BWI76_RS26050at 5383.837 kb on + strand, within BWI76_RS26050at 5384.040 kb on + strandat 5384.048 kb on - strandat 5384.048 kb on - strandat 5384.157 kb on + strand, within BWI76_RS26055at 5384.279 kb on + strand, within BWI76_RS26055at 5384.441 kb on - strand, within BWI76_RS26055at 5384.653 kb on - strand, within BWI76_RS26055at 5384.661 kb on - strand, within BWI76_RS26055at 5384.737 kb on - strand, within BWI76_RS26055at 5384.782 kb on + strand, within BWI76_RS26055at 5384.790 kb on - strand, within BWI76_RS26055at 5384.805 kb on - strand, within BWI76_RS26055at 5384.904 kb on + strand, within BWI76_RS26055at 5385.042 kb on + strand, within BWI76_RS26055at 5385.042 kb on + strand, within BWI76_RS26055at 5385.042 kb on + strand, within BWI76_RS26055at 5385.050 kb on - strand, within BWI76_RS26055at 5385.195 kb on - strand, within BWI76_RS26055at 5385.216 kb on - strandat 5385.230 kb on + strandat 5385.238 kb on - strandat 5385.238 kb on - strandat 5385.304 kb on - strandat 5385.353 kb on + strandat 5385.427 kb on + strandat 5385.428 kb on - strandat 5385.440 kb on - strandat 5385.542 kb on - strand, within BWI76_RS26060at 5385.542 kb on - strand, within BWI76_RS26060at 5385.564 kb on + strand, within BWI76_RS26060at 5385.610 kb on + strand, within BWI76_RS26060at 5385.706 kb on - strand, within BWI76_RS26060at 5385.867 kb on - strand, within BWI76_RS26060at 5386.074 kb on - strand, within BWI76_RS26060at 5386.074 kb on - strand, within BWI76_RS26060at 5386.074 kb on - strand, within BWI76_RS26060at 5386.190 kb on + strand, within BWI76_RS26060at 5386.236 kb on - strand, within BWI76_RS26060at 5386.258 kb on + strand, within BWI76_RS26060at 5386.266 kb on - strand, within BWI76_RS26060at 5386.266 kb on - strand, within BWI76_RS26060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
remove
5,383,007 - BWI76_RS26045 0.78 -0.8
5,383,017 - BWI76_RS26045 0.81 -1.4
5,383,124 + +0.0
5,383,182 - +0.2
5,383,182 - +0.2
5,383,254 + BWI76_RS26050 0.13 +1.7
5,383,262 - BWI76_RS26050 0.14 +0.8
5,383,346 + BWI76_RS26050 0.25 +0.2
5,383,354 - BWI76_RS26050 0.26 +0.4
5,383,436 - BWI76_RS26050 0.36 +0.3
5,383,447 - BWI76_RS26050 0.37 -0.4
5,383,629 - BWI76_RS26050 0.60 +1.1
5,383,703 + BWI76_RS26050 0.69 -0.5
5,383,765 + BWI76_RS26050 0.77 -0.4
5,383,773 - BWI76_RS26050 0.78 +0.2
5,383,773 - BWI76_RS26050 0.78 -0.0
5,383,791 + BWI76_RS26050 0.80 -1.2
5,383,791 + BWI76_RS26050 0.80 +0.4
5,383,798 - BWI76_RS26050 0.81 +1.6
5,383,827 + BWI76_RS26050 0.84 +1.3
5,383,837 + BWI76_RS26050 0.85 -0.1
5,384,040 + -0.6
5,384,048 - -0.3
5,384,048 - -1.2
5,384,157 + BWI76_RS26055 0.14 -0.4
5,384,279 + BWI76_RS26055 0.23 -1.7
5,384,441 - BWI76_RS26055 0.35 -1.0
5,384,653 - BWI76_RS26055 0.50 -1.3
5,384,661 - BWI76_RS26055 0.51 -1.7
5,384,737 - BWI76_RS26055 0.56 -0.6
5,384,782 + BWI76_RS26055 0.59 -1.3
5,384,790 - BWI76_RS26055 0.60 -2.5
5,384,805 - BWI76_RS26055 0.61 -1.7
5,384,904 + BWI76_RS26055 0.68 -1.6
5,385,042 + BWI76_RS26055 0.78 -0.0
5,385,042 + BWI76_RS26055 0.78 +0.5
5,385,042 + BWI76_RS26055 0.78 -0.3
5,385,050 - BWI76_RS26055 0.79 -1.1
5,385,195 - BWI76_RS26055 0.89 -2.9
5,385,216 - -0.2
5,385,230 + -0.9
5,385,238 - +0.0
5,385,238 - -1.5
5,385,304 - -1.0
5,385,353 + +0.2
5,385,427 + -2.9
5,385,428 - +0.7
5,385,440 - -0.1
5,385,542 - BWI76_RS26060 0.11 -0.3
5,385,542 - BWI76_RS26060 0.11 -0.1
5,385,564 + BWI76_RS26060 0.13 +2.1
5,385,610 + BWI76_RS26060 0.18 +1.3
5,385,706 - BWI76_RS26060 0.28 -0.4
5,385,867 - BWI76_RS26060 0.44 -1.7
5,386,074 - BWI76_RS26060 0.64 +1.1
5,386,074 - BWI76_RS26060 0.64 -1.4
5,386,074 - BWI76_RS26060 0.64 -0.0
5,386,190 + BWI76_RS26060 0.76 +0.1
5,386,236 - BWI76_RS26060 0.80 +0.5
5,386,258 + BWI76_RS26060 0.82 +0.1
5,386,266 - BWI76_RS26060 0.83 +0.2
5,386,266 - BWI76_RS26060 0.83 +0.9

Or see this region's nucleotide sequence