Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25480

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25475 and BWI76_RS25480 are separated by 78 nucleotidesBWI76_RS25480 and BWI76_RS25485 are separated by 2 nucleotidesBWI76_RS25485 and BWI76_RS25490 are separated by 7 nucleotides BWI76_RS25475: BWI76_RS25475 - TIGR02099 family protein, at 5,293,022 to 5,296,819 _RS25475 BWI76_RS25480: BWI76_RS25480 - ribonuclease E/G, at 5,296,898 to 5,298,367 _RS25480 BWI76_RS25485: BWI76_RS25485 - septum formation protein Maf, at 5,298,370 to 5,298,951 _RS25485 BWI76_RS25490: BWI76_RS25490 - rod shape-determining protein MreD, at 5,298,959 to 5,299,447 _RS25490 Position (kb) 5296 5297 5298 5299Strain fitness (log2 ratio) -2 -1 0 1at 5296.213 kb on + strand, within BWI76_RS25475at 5296.223 kb on + strand, within BWI76_RS25475at 5296.386 kb on - strand, within BWI76_RS25475at 5296.386 kb on - strand, within BWI76_RS25475at 5296.425 kb on + strand, within BWI76_RS25475at 5296.860 kb on - strandat 5297.232 kb on - strand, within BWI76_RS25480at 5297.312 kb on + strand, within BWI76_RS25480at 5297.525 kb on - strand, within BWI76_RS25480at 5297.591 kb on - strand, within BWI76_RS25480at 5297.593 kb on + strand, within BWI76_RS25480at 5297.654 kb on + strand, within BWI76_RS25480at 5297.865 kb on + strand, within BWI76_RS25480at 5298.411 kb on + strandat 5298.870 kb on - strand, within BWI76_RS25485

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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5,296,213 + BWI76_RS25475 0.84 +0.0
5,296,223 + BWI76_RS25475 0.84 +0.6
5,296,386 - BWI76_RS25475 0.89 +0.2
5,296,386 - BWI76_RS25475 0.89 +0.9
5,296,425 + BWI76_RS25475 0.90 +0.6
5,296,860 - +0.3
5,297,232 - BWI76_RS25480 0.23 -2.1
5,297,312 + BWI76_RS25480 0.28 -1.2
5,297,525 - BWI76_RS25480 0.43 +0.2
5,297,591 - BWI76_RS25480 0.47 -0.3
5,297,593 + BWI76_RS25480 0.47 -1.2
5,297,654 + BWI76_RS25480 0.51 -1.6
5,297,865 + BWI76_RS25480 0.66 -0.5
5,298,411 + -1.6
5,298,870 - BWI76_RS25485 0.86 -0.1

Or see this region's nucleotide sequence