Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20190

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20180 and BWI76_RS20185 are separated by 98 nucleotidesBWI76_RS20185 and BWI76_RS20190 are separated by 15 nucleotidesBWI76_RS20190 and BWI76_RS20195 overlap by 23 nucleotidesBWI76_RS20195 and BWI76_RS20200 are separated by 463 nucleotides BWI76_RS20180: BWI76_RS20180 - NADH-quinone oxidoreductase subunit C/D, at 4,228,967 to 4,230,763 _RS20180 BWI76_RS20185: BWI76_RS20185 - NADH-quinone oxidoreductase subunit B, at 4,230,862 to 4,231,536 _RS20185 BWI76_RS20190: BWI76_RS20190 - NADH-quinone oxidoreductase subunit A, at 4,231,552 to 4,231,998 _RS20190 BWI76_RS20195: BWI76_RS20195 - hypothetical protein, at 4,231,976 to 4,232,186 _RS20195 BWI76_RS20200: BWI76_RS20200 - transcriptional regulator LrhA, at 4,232,650 to 4,233,576 _RS20200 Position (kb) 4231 4232Strain fitness (log2 ratio) -3 -2 -1 0 1at 4230.870 kb on + strandat 4231.087 kb on + strand, within BWI76_RS20185at 4231.302 kb on - strandat 4231.557 kb on + strandat 4231.565 kb on - strandat 4231.591 kb on - strandat 4231.657 kb on - strand, within BWI76_RS20190at 4231.908 kb on + strand, within BWI76_RS20190at 4231.926 kb on - strand, within BWI76_RS20190at 4232.281 kb on - strandat 4232.334 kb on - strandat 4232.434 kb on - strandat 4232.691 kb on - strandat 4232.705 kb on - strandat 4232.874 kb on + strand, within BWI76_RS20200at 4232.962 kb on - strand, within BWI76_RS20200at 4232.962 kb on - strand, within BWI76_RS20200

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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4,230,870 + -1.0
4,231,087 + BWI76_RS20185 0.33 -1.6
4,231,302 - +1.0
4,231,557 + -3.7
4,231,565 - -1.2
4,231,591 - +0.1
4,231,657 - BWI76_RS20190 0.23 -2.2
4,231,908 + BWI76_RS20190 0.80 -1.2
4,231,926 - BWI76_RS20190 0.84 -1.9
4,232,281 - -0.2
4,232,334 - +0.0
4,232,434 - +0.4
4,232,691 - +0.1
4,232,705 - +0.1
4,232,874 + BWI76_RS20200 0.24 +0.4
4,232,962 - BWI76_RS20200 0.34 -0.6
4,232,962 - BWI76_RS20200 0.34 +0.3

Or see this region's nucleotide sequence