Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19865

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19855 and BWI76_RS19860 are separated by 59 nucleotidesBWI76_RS19860 and BWI76_RS19865 are separated by 338 nucleotidesBWI76_RS19865 and BWI76_RS19870 are separated by 42 nucleotides BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309 _RS19855 BWI76_RS19860: BWI76_RS19860 - hypothetical protein, at 4,152,369 to 4,152,791 _RS19860 BWI76_RS19865: BWI76_RS19865 - ecotin, at 4,153,130 to 4,153,621 _RS19865 BWI76_RS19870: BWI76_RS19870 - malate:quinone oxidoreductase, at 4,153,664 to 4,155,298 _RS19870 Position (kb) 4153 4154Strain fitness (log2 ratio) -2 -1 0 1at 4152.231 kb on + strandat 4152.239 kb on - strandat 4152.303 kb on + strandat 4152.304 kb on + strandat 4152.325 kb on - strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.338 kb on - strandat 4152.340 kb on + strandat 4152.340 kb on + strandat 4152.340 kb on - strandat 4152.515 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4153.005 kb on + strandat 4153.011 kb on - strandat 4153.060 kb on + strandat 4153.062 kb on + strandat 4153.163 kb on - strandat 4153.249 kb on - strand, within BWI76_RS19865at 4153.396 kb on - strand, within BWI76_RS19865at 4153.396 kb on - strand, within BWI76_RS19865at 4153.607 kb on + strandat 4154.199 kb on + strand, within BWI76_RS19870at 4154.541 kb on - strand, within BWI76_RS19870at 4154.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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4,152,231 + +0.3
4,152,239 - -0.0
4,152,303 + +0.3
4,152,304 + +0.1
4,152,325 - +0.4
4,152,332 + +0.1
4,152,332 + +1.1
4,152,332 + +0.5
4,152,332 + +0.3
4,152,332 + -0.4
4,152,332 + -0.0
4,152,338 - -0.8
4,152,340 + +0.3
4,152,340 + -0.2
4,152,340 - -1.0
4,152,515 + BWI76_RS19860 0.35 -1.6
4,152,559 + BWI76_RS19860 0.45 +0.3
4,152,559 + BWI76_RS19860 0.45 +0.1
4,152,559 + BWI76_RS19860 0.45 -0.0
4,153,005 + -0.1
4,153,011 - -1.1
4,153,060 + -2.2
4,153,062 + -1.0
4,153,163 - +1.0
4,153,249 - BWI76_RS19865 0.24 -1.3
4,153,396 - BWI76_RS19865 0.54 +1.0
4,153,396 - BWI76_RS19865 0.54 -1.9
4,153,607 + +0.4
4,154,199 + BWI76_RS19870 0.33 +0.8
4,154,541 - BWI76_RS19870 0.54 +0.4
4,154,588 + -2.2

Or see this region's nucleotide sequence