Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19610

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19600 and BWI76_RS19605 overlap by 4 nucleotidesBWI76_RS19605 and BWI76_RS19610 are separated by 127 nucleotidesBWI76_RS19610 and BWI76_RS19615 are separated by 124 nucleotidesBWI76_RS19615 and BWI76_RS19620 are separated by 82 nucleotides BWI76_RS19600: BWI76_RS19600 - hypothetical protein, at 4,097,944 to 4,098,342 _RS19600 BWI76_RS19605: BWI76_RS19605 - CidB/LrgB family autolysis modulator, at 4,098,339 to 4,099,034 _RS19605 BWI76_RS19610: BWI76_RS19610 - Cytidine deaminase (EC 3.5.4.5) (from data), at 4,099,162 to 4,100,046 _RS19610 BWI76_RS19615: BWI76_RS19615 - vancomycin high temperature exclusion protein, at 4,100,171 to 4,100,887 _RS19615 BWI76_RS19620: BWI76_RS19620 - hypothetical protein, at 4,100,970 to 4,101,629 _RS19620 Position (kb) 4099 4100 4101Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4098.227 kb on - strand, within BWI76_RS19600at 4098.240 kb on - strand, within BWI76_RS19600at 4098.264 kb on - strand, within BWI76_RS19600at 4098.353 kb on + strandat 4098.452 kb on + strand, within BWI76_RS19605at 4098.544 kb on - strand, within BWI76_RS19605at 4098.746 kb on + strand, within BWI76_RS19605at 4098.841 kb on - strand, within BWI76_RS19605at 4098.854 kb on + strand, within BWI76_RS19605at 4098.875 kb on + strand, within BWI76_RS19605at 4099.183 kb on + strandat 4099.257 kb on + strand, within BWI76_RS19610at 4099.486 kb on + strand, within BWI76_RS19610at 4099.495 kb on - strand, within BWI76_RS19610at 4099.535 kb on + strand, within BWI76_RS19610at 4099.536 kb on + strand, within BWI76_RS19610at 4099.593 kb on - strand, within BWI76_RS19610at 4099.674 kb on + strand, within BWI76_RS19610at 4100.043 kb on - strandat 4100.075 kb on - strandat 4100.335 kb on + strand, within BWI76_RS19615at 4100.396 kb on + strand, within BWI76_RS19615at 4100.665 kb on + strand, within BWI76_RS19615at 4100.830 kb on + strandat 4100.830 kb on + strandat 4100.830 kb on + strandat 4100.998 kb on - strandat 4101.014 kb on + strandat 4101.042 kb on - strand, within BWI76_RS19620

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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4,098,227 - BWI76_RS19600 0.71 -1.2
4,098,240 - BWI76_RS19600 0.74 -1.2
4,098,264 - BWI76_RS19600 0.80 -0.8
4,098,353 + +1.0
4,098,452 + BWI76_RS19605 0.16 -1.8
4,098,544 - BWI76_RS19605 0.29 -0.2
4,098,746 + BWI76_RS19605 0.58 +2.0
4,098,841 - BWI76_RS19605 0.72 -0.7
4,098,854 + BWI76_RS19605 0.74 +1.4
4,098,875 + BWI76_RS19605 0.77 +2.6
4,099,183 + -0.6
4,099,257 + BWI76_RS19610 0.11 -2.2
4,099,486 + BWI76_RS19610 0.37 -2.7
4,099,495 - BWI76_RS19610 0.38 -1.2
4,099,535 + BWI76_RS19610 0.42 -3.4
4,099,536 + BWI76_RS19610 0.42 -2.3
4,099,593 - BWI76_RS19610 0.49 -3.4
4,099,674 + BWI76_RS19610 0.58 -5.2
4,100,043 - -2.5
4,100,075 - +0.6
4,100,335 + BWI76_RS19615 0.23 +0.7
4,100,396 + BWI76_RS19615 0.31 -0.4
4,100,665 + BWI76_RS19615 0.69 +0.2
4,100,830 + +0.5
4,100,830 + -1.5
4,100,830 + -0.2
4,100,998 - -0.4
4,101,014 + -0.2
4,101,042 - BWI76_RS19620 0.11 +0.8

Or see this region's nucleotide sequence