Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15595

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15585 and BWI76_RS15590 are separated by 182 nucleotidesBWI76_RS15590 and BWI76_RS15595 are separated by 59 nucleotidesBWI76_RS15595 and BWI76_RS15600 are separated by 58 nucleotidesBWI76_RS15600 and BWI76_RS15605 overlap by 4 nucleotidesBWI76_RS15605 and BWI76_RS15610 are separated by 2 nucleotides BWI76_RS15585: BWI76_RS15585 - DNA-binding protein, at 3,262,705 to 3,263,067 _RS15585 BWI76_RS15590: BWI76_RS15590 - hypothetical protein, at 3,263,250 to 3,263,957 _RS15590 BWI76_RS15595: BWI76_RS15595 - hypothetical protein, at 3,264,017 to 3,264,781 _RS15595 BWI76_RS15600: BWI76_RS15600 - hypothetical protein, at 3,264,840 to 3,265,223 _RS15600 BWI76_RS15605: BWI76_RS15605 - hypothetical protein, at 3,265,220 to 3,265,588 _RS15605 BWI76_RS15610: BWI76_RS15610 - hypothetical protein, at 3,265,591 to 3,265,953 _RS15610 Position (kb) 3264 3265Strain fitness (log2 ratio) -1 0 1 2 3at 3263.301 kb on + strandat 3263.403 kb on + strand, within BWI76_RS15590at 3263.516 kb on + strand, within BWI76_RS15590at 3263.693 kb on - strand, within BWI76_RS15590at 3263.836 kb on - strand, within BWI76_RS15590at 3264.104 kb on - strand, within BWI76_RS15595at 3264.185 kb on + strand, within BWI76_RS15595at 3264.185 kb on + strand, within BWI76_RS15595at 3264.312 kb on + strand, within BWI76_RS15595at 3264.444 kb on - strand, within BWI76_RS15595at 3264.675 kb on - strand, within BWI76_RS15595at 3264.713 kb on + strandat 3264.721 kb on - strandat 3264.721 kb on - strandat 3264.721 kb on - strandat 3264.721 kb on - strandat 3264.781 kb on - strandat 3264.869 kb on + strandat 3264.898 kb on + strand, within BWI76_RS15600at 3265.209 kb on + strandat 3265.292 kb on - strand, within BWI76_RS15605at 3265.517 kb on - strand, within BWI76_RS15605

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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3,263,301 + +1.8
3,263,403 + BWI76_RS15590 0.22 +0.6
3,263,516 + BWI76_RS15590 0.38 +1.5
3,263,693 - BWI76_RS15590 0.63 +2.1
3,263,836 - BWI76_RS15590 0.83 +1.4
3,264,104 - BWI76_RS15595 0.11 +0.9
3,264,185 + BWI76_RS15595 0.22 +0.8
3,264,185 + BWI76_RS15595 0.22 +0.9
3,264,312 + BWI76_RS15595 0.39 +1.6
3,264,444 - BWI76_RS15595 0.56 +1.3
3,264,675 - BWI76_RS15595 0.86 +1.7
3,264,713 + +1.0
3,264,721 - +3.7
3,264,721 - +1.8
3,264,721 - +1.4
3,264,721 - +1.2
3,264,781 - +1.3
3,264,869 + +1.2
3,264,898 + BWI76_RS15600 0.15 +1.5
3,265,209 + +1.5
3,265,292 - BWI76_RS15605 0.20 +1.3
3,265,517 - BWI76_RS15605 0.80 +0.5

Or see this region's nucleotide sequence