Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15525

Experiment: 2'-Deoxycytidine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15520 and BWI76_RS15525 are separated by 86 nucleotidesBWI76_RS15525 and BWI76_RS15530 overlap by 14 nucleotidesBWI76_RS15530 and BWI76_RS15535 overlap by 4 nucleotidesBWI76_RS15535 and BWI76_RS15540 overlap by 1 nucleotides BWI76_RS15520: BWI76_RS15520 - hypothetical protein, at 3,250,770 to 3,252,617 _RS15520 BWI76_RS15525: BWI76_RS15525 - hypothetical protein, at 3,252,704 to 3,255,181 _RS15525 BWI76_RS15530: BWI76_RS15530 - hypothetical protein, at 3,255,168 to 3,255,563 _RS15530 BWI76_RS15535: BWI76_RS15535 - hypothetical protein, at 3,255,560 to 3,256,030 _RS15535 BWI76_RS15540: BWI76_RS15540 - hypothetical protein, at 3,256,030 to 3,256,506 _RS15540 Position (kb) 3252 3253 3254 3255 3256Strain fitness (log2 ratio) -1 0 1 2 3at 3251.712 kb on - strand, within BWI76_RS15520at 3251.737 kb on + strand, within BWI76_RS15520at 3251.745 kb on - strand, within BWI76_RS15520at 3251.770 kb on - strand, within BWI76_RS15520at 3251.770 kb on - strand, within BWI76_RS15520at 3251.864 kb on + strand, within BWI76_RS15520at 3251.893 kb on - strand, within BWI76_RS15520at 3251.893 kb on - strand, within BWI76_RS15520at 3251.916 kb on + strand, within BWI76_RS15520at 3251.919 kb on + strand, within BWI76_RS15520at 3251.919 kb on - strand, within BWI76_RS15520at 3251.927 kb on - strand, within BWI76_RS15520at 3251.929 kb on + strand, within BWI76_RS15520at 3251.937 kb on - strand, within BWI76_RS15520at 3251.961 kb on + strand, within BWI76_RS15520at 3251.985 kb on - strand, within BWI76_RS15520at 3252.020 kb on - strand, within BWI76_RS15520at 3252.025 kb on - strand, within BWI76_RS15520at 3252.030 kb on + strand, within BWI76_RS15520at 3252.048 kb on - strand, within BWI76_RS15520at 3252.314 kb on + strand, within BWI76_RS15520at 3252.390 kb on - strand, within BWI76_RS15520at 3252.436 kb on + strandat 3252.444 kb on - strandat 3252.452 kb on + strandat 3252.460 kb on - strandat 3252.469 kb on + strandat 3252.477 kb on - strandat 3252.517 kb on - strandat 3252.519 kb on - strandat 3252.523 kb on + strandat 3252.525 kb on - strandat 3252.543 kb on + strandat 3252.551 kb on - strandat 3252.683 kb on - strandat 3252.766 kb on + strandat 3252.774 kb on - strandat 3252.795 kb on - strandat 3252.805 kb on - strandat 3253.001 kb on + strand, within BWI76_RS15525at 3253.051 kb on + strand, within BWI76_RS15525at 3253.056 kb on + strand, within BWI76_RS15525at 3253.069 kb on + strand, within BWI76_RS15525at 3253.162 kb on + strandat 3253.170 kb on - strand, within BWI76_RS15525at 3253.314 kb on + strand, within BWI76_RS15525at 3253.334 kb on + strand, within BWI76_RS15525at 3253.489 kb on - strand, within BWI76_RS15525at 3253.520 kb on - strand, within BWI76_RS15525at 3254.115 kb on + strand, within BWI76_RS15525at 3254.120 kb on + strand, within BWI76_RS15525at 3254.199 kb on - strand, within BWI76_RS15525at 3254.204 kb on - strand, within BWI76_RS15525at 3254.209 kb on - strand, within BWI76_RS15525at 3254.622 kb on + strand, within BWI76_RS15525at 3254.692 kb on + strand, within BWI76_RS15525at 3254.700 kb on - strand, within BWI76_RS15525at 3254.829 kb on + strand, within BWI76_RS15525at 3255.017 kb on - strandat 3255.432 kb on + strand, within BWI76_RS15530at 3255.517 kb on + strandat 3255.517 kb on + strand, within BWI76_RS15530at 3255.525 kb on - strandat 3255.525 kb on - strandat 3255.555 kb on - strandat 3255.574 kb on + strandat 3255.574 kb on + strandat 3255.582 kb on - strandat 3255.582 kb on - strandat 3255.642 kb on - strand, within BWI76_RS15535at 3255.854 kb on - strand, within BWI76_RS15535at 3255.979 kb on + strand, within BWI76_RS15535at 3255.987 kb on - strandat 3256.015 kb on + strandat 3256.131 kb on + strand, within BWI76_RS15540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
remove
3,251,712 - BWI76_RS15520 0.51 +1.2
3,251,737 + BWI76_RS15520 0.52 +1.1
3,251,745 - BWI76_RS15520 0.53 +1.0
3,251,770 - BWI76_RS15520 0.54 +0.8
3,251,770 - BWI76_RS15520 0.54 +0.7
3,251,864 + BWI76_RS15520 0.59 +0.9
3,251,893 - BWI76_RS15520 0.61 +1.7
3,251,893 - BWI76_RS15520 0.61 +1.3
3,251,916 + BWI76_RS15520 0.62 +1.7
3,251,919 + BWI76_RS15520 0.62 +1.2
3,251,919 - BWI76_RS15520 0.62 +1.2
3,251,927 - BWI76_RS15520 0.63 +0.9
3,251,929 + BWI76_RS15520 0.63 +1.4
3,251,937 - BWI76_RS15520 0.63 +1.1
3,251,961 + BWI76_RS15520 0.64 +1.5
3,251,985 - BWI76_RS15520 0.66 +1.7
3,252,020 - BWI76_RS15520 0.68 +2.1
3,252,025 - BWI76_RS15520 0.68 +1.4
3,252,030 + BWI76_RS15520 0.68 +2.0
3,252,048 - BWI76_RS15520 0.69 +2.2
3,252,314 + BWI76_RS15520 0.84 +1.1
3,252,390 - BWI76_RS15520 0.88 -1.7
3,252,436 + +0.7
3,252,444 - +2.5
3,252,452 + +1.7
3,252,460 - +1.3
3,252,469 + +1.2
3,252,477 - +1.0
3,252,517 - +2.6
3,252,519 - +1.3
3,252,523 + +1.2
3,252,525 - +1.3
3,252,543 + +1.4
3,252,551 - +1.2
3,252,683 - +2.2
3,252,766 + +1.5
3,252,774 - +1.7
3,252,795 - +2.1
3,252,805 - +1.5
3,253,001 + BWI76_RS15525 0.12 +1.2
3,253,051 + BWI76_RS15525 0.14 +0.5
3,253,056 + BWI76_RS15525 0.14 +1.2
3,253,069 + BWI76_RS15525 0.15 +1.9
3,253,162 + +3.1
3,253,170 - BWI76_RS15525 0.19 +1.3
3,253,314 + BWI76_RS15525 0.25 +0.7
3,253,334 + BWI76_RS15525 0.25 +1.7
3,253,489 - BWI76_RS15525 0.32 +2.2
3,253,520 - BWI76_RS15525 0.33 +1.6
3,254,115 + BWI76_RS15525 0.57 +1.2
3,254,120 + BWI76_RS15525 0.57 +2.2
3,254,199 - BWI76_RS15525 0.60 +1.4
3,254,204 - BWI76_RS15525 0.61 +2.9
3,254,209 - BWI76_RS15525 0.61 +1.2
3,254,622 + BWI76_RS15525 0.77 +1.2
3,254,692 + BWI76_RS15525 0.80 +0.8
3,254,700 - BWI76_RS15525 0.81 +1.6
3,254,829 + BWI76_RS15525 0.86 +0.8
3,255,017 - +1.8
3,255,432 + BWI76_RS15530 0.67 +1.1
3,255,517 + -0.3
3,255,517 + BWI76_RS15530 0.88 +1.0
3,255,525 - +1.7
3,255,525 - +1.1
3,255,555 - +1.0
3,255,574 + +0.7
3,255,574 + +1.8
3,255,582 - +1.7
3,255,582 - +1.4
3,255,642 - BWI76_RS15535 0.17 +2.1
3,255,854 - BWI76_RS15535 0.62 +1.9
3,255,979 + BWI76_RS15535 0.89 +0.9
3,255,987 - +0.9
3,256,015 + +1.9
3,256,131 + BWI76_RS15540 0.21 +1.1

Or see this region's nucleotide sequence