Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13595

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13580 and BWI76_RS13585 are separated by 68 nucleotidesBWI76_RS13585 and BWI76_RS13590 are separated by 246 nucleotidesBWI76_RS13590 and BWI76_RS13595 are separated by 75 nucleotidesBWI76_RS13595 and BWI76_RS13600 are separated by 79 nucleotidesBWI76_RS13600 and BWI76_RS13605 are separated by 40 nucleotides BWI76_RS13580: BWI76_RS13580 - glutathione S-transferase domain protein, at 2,831,794 to 2,832,411 _RS13580 BWI76_RS13585: BWI76_RS13585 - 4-oxalocrotonate tautomerase, at 2,832,480 to 2,832,707 _RS13585 BWI76_RS13590: BWI76_RS13590 - hypothetical protein, at 2,832,954 to 2,833,271 _RS13590 BWI76_RS13595: BWI76_RS13595 - transcriptional regulator, at 2,833,347 to 2,833,643 _RS13595 BWI76_RS13600: BWI76_RS13600 - hypothetical protein, at 2,833,723 to 2,834,169 _RS13600 BWI76_RS13605: BWI76_RS13605 - porin, at 2,834,210 to 2,835,814 _RS13605 Position (kb) 2833 2834Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2832.609 kb on - strand, within BWI76_RS13585at 2832.621 kb on + strand, within BWI76_RS13585at 2832.631 kb on + strand, within BWI76_RS13585at 2832.707 kb on + strandat 2832.744 kb on + strandat 2833.122 kb on + strand, within BWI76_RS13590at 2833.127 kb on + strand, within BWI76_RS13590at 2833.216 kb on + strand, within BWI76_RS13590at 2833.333 kb on + strandat 2833.437 kb on + strand, within BWI76_RS13595at 2833.437 kb on + strand, within BWI76_RS13595at 2833.437 kb on + strand, within BWI76_RS13595at 2833.437 kb on + strand, within BWI76_RS13595at 2833.437 kb on + strand, within BWI76_RS13595at 2833.477 kb on + strand, within BWI76_RS13595at 2833.480 kb on + strand, within BWI76_RS13595at 2833.485 kb on + strand, within BWI76_RS13595at 2833.486 kb on + strand, within BWI76_RS13595at 2833.486 kb on + strand, within BWI76_RS13595at 2833.486 kb on + strand, within BWI76_RS13595at 2833.515 kb on + strand, within BWI76_RS13595at 2833.525 kb on + strand, within BWI76_RS13595at 2833.525 kb on + strand, within BWI76_RS13595at 2833.525 kb on + strand, within BWI76_RS13595at 2833.536 kb on + strand, within BWI76_RS13595at 2833.567 kb on + strand, within BWI76_RS13595at 2833.567 kb on + strand, within BWI76_RS13595at 2833.579 kb on + strand, within BWI76_RS13595at 2833.599 kb on + strand, within BWI76_RS13595at 2833.673 kb on + strandat 2833.673 kb on + strandat 2833.722 kb on - strandat 2833.781 kb on + strand, within BWI76_RS13600at 2833.781 kb on + strand, within BWI76_RS13600at 2833.859 kb on + strand, within BWI76_RS13600at 2833.920 kb on + strand, within BWI76_RS13600at 2834.133 kb on + strandat 2834.144 kb on + strandat 2834.150 kb on + strandat 2834.173 kb on + strandat 2834.212 kb on - strandat 2834.240 kb on - strandat 2834.248 kb on - strandat 2834.248 kb on - strandat 2834.251 kb on - strandat 2834.271 kb on - strandat 2834.388 kb on - strand, within BWI76_RS13605at 2834.400 kb on - strand, within BWI76_RS13605at 2834.432 kb on + strand, within BWI76_RS13605at 2834.483 kb on + strandat 2834.598 kb on + strand, within BWI76_RS13605

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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2,832,609 - BWI76_RS13585 0.57 -0.4
2,832,621 + BWI76_RS13585 0.62 +0.9
2,832,631 + BWI76_RS13585 0.66 +0.9
2,832,707 + +0.1
2,832,744 + +0.6
2,833,122 + BWI76_RS13590 0.53 -0.2
2,833,127 + BWI76_RS13590 0.54 -0.3
2,833,216 + BWI76_RS13590 0.82 +0.1
2,833,333 + -2.9
2,833,437 + BWI76_RS13595 0.30 -2.6
2,833,437 + BWI76_RS13595 0.30 -2.5
2,833,437 + BWI76_RS13595 0.30 -1.7
2,833,437 + BWI76_RS13595 0.30 -3.9
2,833,437 + BWI76_RS13595 0.30 -1.6
2,833,477 + BWI76_RS13595 0.44 +0.1
2,833,480 + BWI76_RS13595 0.45 -0.4
2,833,485 + BWI76_RS13595 0.46 -0.3
2,833,486 + BWI76_RS13595 0.47 -0.1
2,833,486 + BWI76_RS13595 0.47 +1.1
2,833,486 + BWI76_RS13595 0.47 -2.8
2,833,515 + BWI76_RS13595 0.57 -0.2
2,833,525 + BWI76_RS13595 0.60 -0.8
2,833,525 + BWI76_RS13595 0.60 -0.4
2,833,525 + BWI76_RS13595 0.60 -0.2
2,833,536 + BWI76_RS13595 0.64 -0.8
2,833,567 + BWI76_RS13595 0.74 -1.3
2,833,567 + BWI76_RS13595 0.74 -2.9
2,833,579 + BWI76_RS13595 0.78 -1.6
2,833,599 + BWI76_RS13595 0.85 -2.1
2,833,673 + +1.6
2,833,673 + +0.1
2,833,722 - +0.9
2,833,781 + BWI76_RS13600 0.13 +0.9
2,833,781 + BWI76_RS13600 0.13 -0.9
2,833,859 + BWI76_RS13600 0.30 +0.1
2,833,920 + BWI76_RS13600 0.44 -0.2
2,834,133 + -1.2
2,834,144 + -0.1
2,834,150 + +0.1
2,834,173 + -0.5
2,834,212 - -0.0
2,834,240 - -0.4
2,834,248 - +3.2
2,834,248 - +0.5
2,834,251 - +1.3
2,834,271 - +0.6
2,834,388 - BWI76_RS13605 0.11 -0.2
2,834,400 - BWI76_RS13605 0.12 -0.2
2,834,432 + BWI76_RS13605 0.14 -1.4
2,834,483 + +0.4
2,834,598 + BWI76_RS13605 0.24 +1.4

Or see this region's nucleotide sequence