Experiment: 2'-Deoxycytidine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11425 and BWI76_RS11430 are separated by 297 nucleotides BWI76_RS11430 and BWI76_RS11435 overlap by 6 nucleotides BWI76_RS11435 and BWI76_RS11440 overlap by 14 nucleotides BWI76_RS11440 and BWI76_RS11445 are separated by 162 nucleotides
BWI76_RS11425: BWI76_RS11425 - GAF domain/diguanylate cyclase, at 2,406,404 to 2,407,417
_RS11425
BWI76_RS11430: BWI76_RS11430 - lipoprotein, at 2,407,715 to 2,407,954
_RS11430
BWI76_RS11435: BWI76_RS11435 - hypothetical protein, at 2,407,949 to 2,408,293
_RS11435
BWI76_RS11440: BWI76_RS11440 - hypothetical protein, at 2,408,280 to 2,408,789
_RS11440
BWI76_RS11445: BWI76_RS11445 - hypothetical protein, at 2,408,952 to 2,409,644
_RS11445
Position (kb)
2407
2408 Strain fitness (log2 ratio)
-1
0
1 at 2406.891 kb on + strand, within BWI76_RS11425 at 2406.899 kb on - strand, within BWI76_RS11425 at 2406.899 kb on - strand, within BWI76_RS11425 at 2406.899 kb on - strand, within BWI76_RS11425 at 2407.016 kb on - strand, within BWI76_RS11425 at 2407.252 kb on - strand, within BWI76_RS11425 at 2407.602 kb on + strand at 2407.722 kb on + strand at 2407.750 kb on + strand, within BWI76_RS11430 at 2408.018 kb on - strand, within BWI76_RS11435 at 2408.109 kb on - strand, within BWI76_RS11435 at 2408.257 kb on + strand, within BWI76_RS11435 at 2408.469 kb on + strand, within BWI76_RS11440 at 2408.829 kb on - strand at 2408.949 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C) remove 2,406,891 + BWI76_RS11425 0.48 -0.0 2,406,899 - BWI76_RS11425 0.49 +0.1 2,406,899 - BWI76_RS11425 0.49 +0.1 2,406,899 - BWI76_RS11425 0.49 -0.3 2,407,016 - BWI76_RS11425 0.60 +0.8 2,407,252 - BWI76_RS11425 0.84 +0.5 2,407,602 + -1.6 2,407,722 + -0.3 2,407,750 + BWI76_RS11430 0.15 -1.0 2,408,018 - BWI76_RS11435 0.20 +0.3 2,408,109 - BWI76_RS11435 0.46 +0.7 2,408,257 + BWI76_RS11435 0.89 -1.1 2,408,469 + BWI76_RS11440 0.37 -0.3 2,408,829 - +0.2 2,408,949 + -0.2
Or see this region's nucleotide sequence