Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09335

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09325 and BWI76_RS09330 are separated by 68 nucleotidesBWI76_RS09330 and BWI76_RS09335 overlap by 4 nucleotidesBWI76_RS09335 and BWI76_RS09340 overlap by 14 nucleotidesBWI76_RS09340 and BWI76_RS09345 overlap by 11 nucleotides BWI76_RS09325: BWI76_RS09325 - putative bacteriophage tail completion protein, at 1,958,420 to 1,958,866 _RS09325 BWI76_RS09330: BWI76_RS09330 - baseplate assembly protein V, at 1,958,935 to 1,959,507 _RS09330 BWI76_RS09335: BWI76_RS09335 - baseplate assembly protein W, at 1,959,504 to 1,959,866 _RS09335 BWI76_RS09340: BWI76_RS09340 - baseplate assembly protein J, at 1,959,853 to 1,960,761 _RS09340 BWI76_RS09345: BWI76_RS09345 - phage tail protein I, at 1,960,751 to 1,961,359 _RS09345 Position (kb) 1959 1960Strain fitness (log2 ratio) -2 -1 0 1at 1958.602 kb on + strand, within BWI76_RS09325at 1958.769 kb on + strand, within BWI76_RS09325at 1959.352 kb on + strand, within BWI76_RS09330at 1959.433 kb on + strand, within BWI76_RS09330at 1959.775 kb on + strand, within BWI76_RS09335at 1959.901 kb on - strandat 1960.048 kb on - strand, within BWI76_RS09340at 1960.156 kb on + strand, within BWI76_RS09340at 1960.366 kb on + strand, within BWI76_RS09340at 1960.416 kb on + strand, within BWI76_RS09340at 1960.429 kb on - strand, within BWI76_RS09340at 1960.434 kb on - strand, within BWI76_RS09340at 1960.554 kb on - strand, within BWI76_RS09340at 1960.618 kb on - strand, within BWI76_RS09340at 1960.701 kb on - strandat 1960.815 kb on - strand, within BWI76_RS09345

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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1,958,602 + BWI76_RS09325 0.41 +0.1
1,958,769 + BWI76_RS09325 0.78 -0.2
1,959,352 + BWI76_RS09330 0.73 -0.3
1,959,433 + BWI76_RS09330 0.87 +1.7
1,959,775 + BWI76_RS09335 0.75 -1.8
1,959,901 - +0.4
1,960,048 - BWI76_RS09340 0.21 +0.2
1,960,156 + BWI76_RS09340 0.33 -0.3
1,960,366 + BWI76_RS09340 0.56 -1.0
1,960,416 + BWI76_RS09340 0.62 -0.1
1,960,429 - BWI76_RS09340 0.63 -0.3
1,960,434 - BWI76_RS09340 0.64 -1.6
1,960,554 - BWI76_RS09340 0.77 -0.2
1,960,618 - BWI76_RS09340 0.84 -0.2
1,960,701 - +0.3
1,960,815 - BWI76_RS09345 0.11 +0.0

Or see this region's nucleotide sequence