Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08720

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08715 and BWI76_RS08720 are separated by 230 nucleotidesBWI76_RS08720 and BWI76_RS08725 overlap by 4 nucleotides BWI76_RS08715: BWI76_RS08715 - acyl-CoA thioesterase, at 1,835,092 to 1,836,375 _RS08715 BWI76_RS08720: BWI76_RS08720 - imidazolonepropionase, at 1,836,606 to 1,837,823 _RS08720 BWI76_RS08725: BWI76_RS08725 - Formiminoglutamase (EC 3.5.3.8) (from data), at 1,837,820 to 1,838,776 _RS08725 Position (kb) 1836 1837 1838Strain fitness (log2 ratio) -2 -1 0 1at 1835.711 kb on - strand, within BWI76_RS08715at 1835.788 kb on + strand, within BWI76_RS08715at 1836.021 kb on + strand, within BWI76_RS08715at 1836.029 kb on - strand, within BWI76_RS08715at 1836.096 kb on + strand, within BWI76_RS08715at 1836.330 kb on - strandat 1836.334 kb on + strandat 1836.434 kb on - strandat 1836.585 kb on + strandat 1836.688 kb on - strandat 1836.688 kb on - strandat 1837.299 kb on + strand, within BWI76_RS08720at 1837.602 kb on + strand, within BWI76_RS08720at 1837.653 kb on - strand, within BWI76_RS08720at 1837.885 kb on - strandat 1838.181 kb on + strand, within BWI76_RS08725at 1838.229 kb on + strand, within BWI76_RS08725at 1838.484 kb on - strand, within BWI76_RS08725at 1838.668 kb on + strand, within BWI76_RS08725at 1838.668 kb on + strand, within BWI76_RS08725

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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1,835,711 - BWI76_RS08715 0.48 -0.2
1,835,788 + BWI76_RS08715 0.54 +0.7
1,836,021 + BWI76_RS08715 0.72 -0.9
1,836,029 - BWI76_RS08715 0.73 -0.3
1,836,096 + BWI76_RS08715 0.78 +0.0
1,836,330 - -0.5
1,836,334 + -0.1
1,836,434 - -0.0
1,836,585 + +0.9
1,836,688 - -0.4
1,836,688 - +0.1
1,837,299 + BWI76_RS08720 0.57 -2.3
1,837,602 + BWI76_RS08720 0.82 -0.3
1,837,653 - BWI76_RS08720 0.86 -0.5
1,837,885 - +1.0
1,838,181 + BWI76_RS08725 0.38 -0.8
1,838,229 + BWI76_RS08725 0.43 +0.4
1,838,484 - BWI76_RS08725 0.69 +0.1
1,838,668 + BWI76_RS08725 0.89 -0.3
1,838,668 + BWI76_RS08725 0.89 +0.5

Or see this region's nucleotide sequence