Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08700

Experiment: 2'-Deoxycytidine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08695 and BWI76_RS08700 are separated by 186 nucleotidesBWI76_RS08700 and BWI76_RS08705 are separated by 94 nucleotidesBWI76_RS08705 and BWI76_RS08710 are separated by 58 nucleotides BWI76_RS08695: BWI76_RS08695 - hypothetical protein, at 1,831,609 to 1,832,832 _RS08695 BWI76_RS08700: BWI76_RS08700 - helix-turn-helix-type transcriptional regulator, at 1,833,019 to 1,833,750 _RS08700 BWI76_RS08705: BWI76_RS08705 - putative LuxR family regulatory protein, at 1,833,845 to 1,834,399 _RS08705 BWI76_RS08710: BWI76_RS08710 - hypothetical protein, at 1,834,458 to 1,834,676 _RS08710 Position (kb) 1833 1834Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1832.078 kb on - strand, within BWI76_RS08695at 1832.082 kb on + strand, within BWI76_RS08695at 1832.090 kb on - strand, within BWI76_RS08695at 1832.090 kb on - strand, within BWI76_RS08695at 1832.090 kb on - strand, within BWI76_RS08695at 1832.181 kb on + strand, within BWI76_RS08695at 1832.184 kb on - strand, within BWI76_RS08695at 1832.276 kb on - strand, within BWI76_RS08695at 1832.293 kb on + strand, within BWI76_RS08695at 1832.302 kb on - strand, within BWI76_RS08695at 1832.304 kb on + strand, within BWI76_RS08695at 1832.313 kb on - strand, within BWI76_RS08695at 1832.317 kb on + strand, within BWI76_RS08695at 1832.317 kb on - strand, within BWI76_RS08695at 1832.329 kb on - strand, within BWI76_RS08695at 1832.484 kb on + strand, within BWI76_RS08695at 1832.484 kb on + strand, within BWI76_RS08695at 1832.492 kb on - strand, within BWI76_RS08695at 1832.553 kb on + strand, within BWI76_RS08695at 1832.616 kb on - strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.618 kb on + strand, within BWI76_RS08695at 1832.623 kb on + strand, within BWI76_RS08695at 1832.623 kb on + strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.626 kb on - strand, within BWI76_RS08695at 1832.644 kb on + strand, within BWI76_RS08695at 1832.662 kb on - strand, within BWI76_RS08695at 1832.678 kb on + strand, within BWI76_RS08695at 1832.690 kb on + strand, within BWI76_RS08695at 1832.690 kb on + strand, within BWI76_RS08695at 1832.690 kb on + strand, within BWI76_RS08695at 1832.690 kb on + strand, within BWI76_RS08695at 1832.698 kb on - strand, within BWI76_RS08695at 1832.698 kb on - strand, within BWI76_RS08695at 1832.698 kb on - strand, within BWI76_RS08695at 1832.698 kb on - strand, within BWI76_RS08695at 1832.698 kb on - strand, within BWI76_RS08695at 1832.707 kb on + strand, within BWI76_RS08695at 1832.712 kb on + strandat 1832.716 kb on + strandat 1832.750 kb on - strandat 1832.765 kb on + strandat 1832.793 kb on + strandat 1832.801 kb on - strandat 1832.801 kb on - strandat 1832.805 kb on + strandat 1832.813 kb on - strandat 1832.858 kb on - strandat 1832.908 kb on + strandat 1832.908 kb on + strandat 1832.908 kb on + strandat 1832.917 kb on + strandat 1832.967 kb on + strandat 1833.004 kb on + strandat 1833.060 kb on + strandat 1833.093 kb on + strand, within BWI76_RS08700at 1833.093 kb on + strand, within BWI76_RS08700at 1833.095 kb on + strand, within BWI76_RS08700at 1833.095 kb on + strand, within BWI76_RS08700at 1833.095 kb on + strand, within BWI76_RS08700at 1833.103 kb on - strand, within BWI76_RS08700at 1833.114 kb on + strand, within BWI76_RS08700at 1833.114 kb on + strand, within BWI76_RS08700at 1833.127 kb on - strand, within BWI76_RS08700at 1833.151 kb on + strand, within BWI76_RS08700at 1833.191 kb on + strand, within BWI76_RS08700at 1833.213 kb on + strand, within BWI76_RS08700at 1833.341 kb on + strand, within BWI76_RS08700at 1833.399 kb on + strand, within BWI76_RS08700at 1833.399 kb on + strand, within BWI76_RS08700at 1833.399 kb on + strand, within BWI76_RS08700at 1833.422 kb on - strand, within BWI76_RS08700at 1833.427 kb on - strand, within BWI76_RS08700at 1833.430 kb on - strand, within BWI76_RS08700at 1833.434 kb on + strand, within BWI76_RS08700at 1833.582 kb on + strand, within BWI76_RS08700at 1833.715 kb on + strandat 1833.716 kb on + strandat 1833.720 kb on + strandat 1833.728 kb on - strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.755 kb on + strandat 1833.768 kb on - strandat 1833.814 kb on - strandat 1833.824 kb on + strandat 1833.826 kb on - strandat 1833.832 kb on - strandat 1833.832 kb on - strandat 1833.867 kb on - strandat 1833.868 kb on - strandat 1834.093 kb on + strand, within BWI76_RS08705at 1834.093 kb on + strand, within BWI76_RS08705at 1834.093 kb on + strand, within BWI76_RS08705at 1834.098 kb on + strand, within BWI76_RS08705at 1834.175 kb on + strand, within BWI76_RS08705at 1834.209 kb on - strand, within BWI76_RS08705at 1834.223 kb on - strand, within BWI76_RS08705at 1834.223 kb on - strand, within BWI76_RS08705at 1834.253 kb on - strand, within BWI76_RS08705at 1834.319 kb on + strand, within BWI76_RS08705at 1834.327 kb on - strand, within BWI76_RS08705at 1834.405 kb on - strandat 1834.407 kb on - strandat 1834.468 kb on + strandat 1834.558 kb on - strand, within BWI76_RS08710at 1834.570 kb on + strandat 1834.572 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.580 kb on - strand, within BWI76_RS08710at 1834.585 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.591 kb on + strand, within BWI76_RS08710at 1834.591 kb on + strand, within BWI76_RS08710at 1834.591 kb on + strand, within BWI76_RS08710at 1834.593 kb on - strand, within BWI76_RS08710at 1834.597 kb on - strand, within BWI76_RS08710at 1834.597 kb on - strand, within BWI76_RS08710at 1834.599 kb on - strand, within BWI76_RS08710at 1834.599 kb on - strand, within BWI76_RS08710at 1834.599 kb on - strand, within BWI76_RS08710at 1834.604 kb on - strand, within BWI76_RS08710at 1834.678 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.742 kb on + strandat 1834.749 kb on + strandat 1834.749 kb on + strandat 1834.749 kb on + strandat 1834.749 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
remove
1,832,078 - BWI76_RS08695 0.38 -0.2
1,832,082 + BWI76_RS08695 0.39 -0.8
1,832,090 - BWI76_RS08695 0.39 +0.7
1,832,090 - BWI76_RS08695 0.39 -0.3
1,832,090 - BWI76_RS08695 0.39 -3.1
1,832,181 + BWI76_RS08695 0.47 +1.2
1,832,184 - BWI76_RS08695 0.47 +0.2
1,832,276 - BWI76_RS08695 0.54 +0.6
1,832,293 + BWI76_RS08695 0.56 -0.8
1,832,302 - BWI76_RS08695 0.57 +0.2
1,832,304 + BWI76_RS08695 0.57 -0.5
1,832,313 - BWI76_RS08695 0.58 -0.8
1,832,317 + BWI76_RS08695 0.58 -1.1
1,832,317 - BWI76_RS08695 0.58 -0.5
1,832,329 - BWI76_RS08695 0.59 +0.9
1,832,484 + BWI76_RS08695 0.71 +0.4
1,832,484 + BWI76_RS08695 0.71 -1.5
1,832,492 - BWI76_RS08695 0.72 -0.2
1,832,553 + BWI76_RS08695 0.77 -0.8
1,832,616 - BWI76_RS08695 0.82 +1.9
1,832,618 + BWI76_RS08695 0.82 -0.5
1,832,618 + BWI76_RS08695 0.82 -1.3
1,832,618 + BWI76_RS08695 0.82 -1.0
1,832,618 + BWI76_RS08695 0.82 -2.3
1,832,618 + BWI76_RS08695 0.82 +0.9
1,832,618 + BWI76_RS08695 0.82 +0.6
1,832,618 + BWI76_RS08695 0.82 +0.4
1,832,618 + BWI76_RS08695 0.82 +0.5
1,832,618 + BWI76_RS08695 0.82 -0.3
1,832,623 + BWI76_RS08695 0.83 -0.3
1,832,623 + BWI76_RS08695 0.83 -2.2
1,832,626 - BWI76_RS08695 0.83 +0.9
1,832,626 - BWI76_RS08695 0.83 -1.3
1,832,626 - BWI76_RS08695 0.83 -2.5
1,832,626 - BWI76_RS08695 0.83 +0.5
1,832,626 - BWI76_RS08695 0.83 -0.7
1,832,626 - BWI76_RS08695 0.83 -0.1
1,832,626 - BWI76_RS08695 0.83 +0.9
1,832,626 - BWI76_RS08695 0.83 -1.6
1,832,626 - BWI76_RS08695 0.83 -0.4
1,832,626 - BWI76_RS08695 0.83 +0.1
1,832,626 - BWI76_RS08695 0.83 -0.1
1,832,644 + BWI76_RS08695 0.85 -0.9
1,832,662 - BWI76_RS08695 0.86 -0.8
1,832,678 + BWI76_RS08695 0.87 -0.2
1,832,690 + BWI76_RS08695 0.88 -0.4
1,832,690 + BWI76_RS08695 0.88 -0.6
1,832,690 + BWI76_RS08695 0.88 +0.4
1,832,690 + BWI76_RS08695 0.88 -0.5
1,832,698 - BWI76_RS08695 0.89 +0.1
1,832,698 - BWI76_RS08695 0.89 +2.5
1,832,698 - BWI76_RS08695 0.89 -0.2
1,832,698 - BWI76_RS08695 0.89 +0.6
1,832,698 - BWI76_RS08695 0.89 -0.3
1,832,707 + BWI76_RS08695 0.90 +0.3
1,832,712 + -0.2
1,832,716 + +0.3
1,832,750 - -0.0
1,832,765 + +0.4
1,832,793 + -1.8
1,832,801 - +0.7
1,832,801 - +0.9
1,832,805 + -0.4
1,832,813 - -0.1
1,832,858 - -1.4
1,832,908 + +0.2
1,832,908 + +0.1
1,832,908 + -3.1
1,832,917 + +1.0
1,832,967 + +0.5
1,833,004 + +0.5
1,833,060 + +0.1
1,833,093 + BWI76_RS08700 0.10 -1.3
1,833,093 + BWI76_RS08700 0.10 -2.2
1,833,095 + BWI76_RS08700 0.10 -1.9
1,833,095 + BWI76_RS08700 0.10 -2.8
1,833,095 + BWI76_RS08700 0.10 -0.4
1,833,103 - BWI76_RS08700 0.11 -1.9
1,833,114 + BWI76_RS08700 0.13 +0.1
1,833,114 + BWI76_RS08700 0.13 -0.4
1,833,127 - BWI76_RS08700 0.15 -0.0
1,833,151 + BWI76_RS08700 0.18 -2.2
1,833,191 + BWI76_RS08700 0.23 -0.4
1,833,213 + BWI76_RS08700 0.27 -0.2
1,833,341 + BWI76_RS08700 0.44 +0.1
1,833,399 + BWI76_RS08700 0.52 -1.9
1,833,399 + BWI76_RS08700 0.52 -1.0
1,833,399 + BWI76_RS08700 0.52 -0.8
1,833,422 - BWI76_RS08700 0.55 +0.1
1,833,427 - BWI76_RS08700 0.56 -1.2
1,833,430 - BWI76_RS08700 0.56 -1.2
1,833,434 + BWI76_RS08700 0.57 -2.0
1,833,582 + BWI76_RS08700 0.77 -0.9
1,833,715 + -0.3
1,833,716 + -0.9
1,833,720 + -1.8
1,833,728 - +0.4
1,833,745 + +0.0
1,833,745 + +0.1
1,833,745 + -0.3
1,833,745 + -0.1
1,833,745 + -0.1
1,833,745 + +0.0
1,833,745 + -0.5
1,833,745 + +1.6
1,833,745 + -0.8
1,833,745 + +0.6
1,833,745 + -1.9
1,833,753 - +1.5
1,833,753 - +0.4
1,833,753 - -0.9
1,833,753 - -0.2
1,833,753 - +0.1
1,833,753 - +0.1
1,833,755 + -0.9
1,833,768 - -0.6
1,833,814 - +0.1
1,833,824 + -1.2
1,833,826 - +0.7
1,833,832 - +0.3
1,833,832 - -0.4
1,833,867 - +0.4
1,833,868 - +0.2
1,834,093 + BWI76_RS08705 0.45 -0.8
1,834,093 + BWI76_RS08705 0.45 -2.4
1,834,093 + BWI76_RS08705 0.45 -0.5
1,834,098 + BWI76_RS08705 0.46 -1.4
1,834,175 + BWI76_RS08705 0.59 -0.5
1,834,209 - BWI76_RS08705 0.66 -1.4
1,834,223 - BWI76_RS08705 0.68 +0.2
1,834,223 - BWI76_RS08705 0.68 -0.6
1,834,253 - BWI76_RS08705 0.74 -1.5
1,834,319 + BWI76_RS08705 0.85 +0.6
1,834,327 - BWI76_RS08705 0.87 -1.4
1,834,405 - -0.3
1,834,407 - -0.5
1,834,468 + +0.2
1,834,558 - BWI76_RS08710 0.46 -0.2
1,834,570 + -0.0
1,834,572 + BWI76_RS08710 0.52 -0.2
1,834,579 + BWI76_RS08710 0.55 -0.3
1,834,579 + BWI76_RS08710 0.55 +1.1
1,834,579 + BWI76_RS08710 0.55 -2.2
1,834,579 + BWI76_RS08710 0.55 +0.1
1,834,579 + BWI76_RS08710 0.55 +1.5
1,834,579 + BWI76_RS08710 0.55 +0.1
1,834,579 + BWI76_RS08710 0.55 -0.8
1,834,579 + BWI76_RS08710 0.55 +0.6
1,834,579 + BWI76_RS08710 0.55 +1.0
1,834,579 + BWI76_RS08710 0.55 -0.4
1,834,580 - BWI76_RS08710 0.56 -0.0
1,834,585 - BWI76_RS08710 0.58 +0.4
1,834,587 - BWI76_RS08710 0.59 -0.9
1,834,587 - BWI76_RS08710 0.59 +1.0
1,834,587 - BWI76_RS08710 0.59 -2.4
1,834,587 - BWI76_RS08710 0.59 -1.4
1,834,587 - BWI76_RS08710 0.59 -0.4
1,834,587 - BWI76_RS08710 0.59 -0.2
1,834,587 - BWI76_RS08710 0.59 -2.1
1,834,587 - BWI76_RS08710 0.59 +0.2
1,834,587 - BWI76_RS08710 0.59 -0.9
1,834,587 - BWI76_RS08710 0.59 -0.9
1,834,587 - BWI76_RS08710 0.59 -0.0
1,834,587 - BWI76_RS08710 0.59 -0.2
1,834,591 + BWI76_RS08710 0.61 -0.2
1,834,591 + BWI76_RS08710 0.61 -0.6
1,834,591 + BWI76_RS08710 0.61 +0.1
1,834,593 - BWI76_RS08710 0.62 -1.1
1,834,597 - BWI76_RS08710 0.63 -0.4
1,834,597 - BWI76_RS08710 0.63 -0.9
1,834,599 - BWI76_RS08710 0.64 +0.7
1,834,599 - BWI76_RS08710 0.64 +1.0
1,834,599 - BWI76_RS08710 0.64 -0.7
1,834,604 - BWI76_RS08710 0.67 -1.2
1,834,678 + +1.3
1,834,729 + +1.3
1,834,729 + -0.6
1,834,729 + -1.6
1,834,729 + -0.1
1,834,729 + +0.4
1,834,729 + +1.4
1,834,729 + +0.1
1,834,729 + -1.9
1,834,729 + -1.4
1,834,729 + +1.0
1,834,737 - +1.0
1,834,737 - -0.2
1,834,737 - -0.1
1,834,737 - +0.3
1,834,737 - +1.1
1,834,737 - +0.1
1,834,737 - -0.2
1,834,742 + -0.5
1,834,749 + +0.1
1,834,749 + +0.6
1,834,749 + +1.8
1,834,749 + -0.3

Or see this region's nucleotide sequence