Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06525

Experiment: 2'-Deoxycytidine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06520 and BWI76_RS06525 are separated by 316 nucleotidesBWI76_RS06525 and BWI76_RS06530 are separated by 132 nucleotides BWI76_RS06520: BWI76_RS06520 - trigger factor, at 1,368,872 to 1,370,170 _RS06520 BWI76_RS06525: BWI76_RS06525 - ATP-dependent Clp protease proteolytic subunit, at 1,370,487 to 1,371,110 _RS06525 BWI76_RS06530: BWI76_RS06530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,371,243 to 1,372,517 _RS06530 Position (kb) 1370 1371 1372Strain fitness (log2 ratio) -3 -2 -1 0 1at 1369.782 kb on - strand, within BWI76_RS06520at 1369.865 kb on - strand, within BWI76_RS06520at 1369.900 kb on - strand, within BWI76_RS06520at 1370.142 kb on + strandat 1370.182 kb on + strandat 1370.182 kb on + strandat 1370.369 kb on + strandat 1370.379 kb on - strandat 1370.397 kb on - strandat 1370.402 kb on - strandat 1370.523 kb on + strandat 1370.651 kb on + strand, within BWI76_RS06525at 1370.854 kb on - strand, within BWI76_RS06525at 1370.987 kb on - strand, within BWI76_RS06525at 1371.000 kb on + strand, within BWI76_RS06525at 1371.007 kb on + strand, within BWI76_RS06525at 1371.232 kb on + strandat 1371.276 kb on + strandat 1371.435 kb on - strand, within BWI76_RS06530at 1371.570 kb on - strand, within BWI76_RS06530at 1371.705 kb on + strand, within BWI76_RS06530at 1371.748 kb on - strand, within BWI76_RS06530

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 10 mM (C)
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1,369,782 - BWI76_RS06520 0.70 +0.8
1,369,865 - BWI76_RS06520 0.76 -0.6
1,369,900 - BWI76_RS06520 0.79 -0.4
1,370,142 + +0.4
1,370,182 + -0.4
1,370,182 + -1.3
1,370,369 + -0.0
1,370,379 - -1.1
1,370,397 - +0.4
1,370,402 - -1.5
1,370,523 + -0.8
1,370,651 + BWI76_RS06525 0.26 -2.8
1,370,854 - BWI76_RS06525 0.59 +0.8
1,370,987 - BWI76_RS06525 0.80 -1.6
1,371,000 + BWI76_RS06525 0.82 -1.3
1,371,007 + BWI76_RS06525 0.83 -0.6
1,371,232 + -1.3
1,371,276 + -0.8
1,371,435 - BWI76_RS06530 0.15 -1.0
1,371,570 - BWI76_RS06530 0.26 -0.3
1,371,705 + BWI76_RS06530 0.36 -1.3
1,371,748 - BWI76_RS06530 0.40 -1.0

Or see this region's nucleotide sequence