Experiment: 1,4-B-D-Galactobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0825 and BT0826 are separated by 117 nucleotides BT0826 and BT0827 are separated by 15 nucleotides BT0827 and BT0828 are separated by 89 nucleotides BT0828 and BT0829 are separated by 19 nucleotides
BT0825: BT0825 - altronate oxidoreductase (NCBI ptt file), at 1,019,696 to 1,021,135
BT0825
BT0826: BT0826 - hypothetical protein (NCBI ptt file), at 1,021,253 to 1,021,786
BT0826
BT0827: BT0827 - hypothetical protein (NCBI ptt file), at 1,021,802 to 1,022,899
BT0827
BT0828: BT0828 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file), at 1,022,989 to 1,023,537
BT0828
BT0829: BT0829 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 1,023,557 to 1,024,870
BT0829
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1021.071 kb on + strand at 1021.072 kb on - strand at 1021.091 kb on - strand at 1021.091 kb on - strand at 1021.106 kb on - strand at 1021.142 kb on - strand at 1021.144 kb on + strand at 1021.149 kb on + strand at 1021.195 kb on - strand at 1021.201 kb on - strand at 1021.205 kb on - strand at 1021.210 kb on - strand at 1021.254 kb on + strand at 1021.545 kb on - strand, within BT0826 at 1021.582 kb on + strand, within BT0826 at 1021.601 kb on - strand, within BT0826 at 1021.728 kb on + strand, within BT0826 at 1021.766 kb on - strand at 1021.868 kb on - strand at 1021.905 kb on + strand at 1021.907 kb on + strand at 1022.007 kb on - strand, within BT0827 at 1022.320 kb on - strand, within BT0827 at 1022.357 kb on - strand, within BT0827 at 1022.517 kb on - strand, within BT0827 at 1022.560 kb on - strand, within BT0827 at 1022.900 kb on - strand at 1022.982 kb on - strand at 1022.982 kb on - strand at 1022.996 kb on - strand at 1022.997 kb on + strand at 1023.061 kb on + strand, within BT0828 at 1023.187 kb on + strand, within BT0828 at 1023.398 kb on - strand, within BT0828 at 1023.642 kb on + strand at 1023.696 kb on - strand, within BT0829 at 1023.880 kb on + strand, within BT0829 at 1023.895 kb on + strand, within BT0829
Per-strain Table
Position Strand Gene LocusTag Fraction 1,4-B-D-Galactobiose (C) remove 1,021,071 + -0.6 1,021,072 - +1.2 1,021,091 - -0.6 1,021,091 - -0.8 1,021,106 - +1.2 1,021,142 - -0.2 1,021,144 + -2.5 1,021,149 + -0.6 1,021,195 - +0.2 1,021,201 - -0.3 1,021,205 - -1.4 1,021,210 - +0.5 1,021,254 + +0.2 1,021,545 - BT0826 0.55 +1.2 1,021,582 + BT0826 0.62 +1.7 1,021,601 - BT0826 0.65 -0.1 1,021,728 + BT0826 0.89 -0.8 1,021,766 - +0.2 1,021,868 - -0.6 1,021,905 + +0.2 1,021,907 + -0.8 1,022,007 - BT0827 0.19 -1.8 1,022,320 - BT0827 0.47 -2.1 1,022,357 - BT0827 0.51 -1.3 1,022,517 - BT0827 0.65 +0.6 1,022,560 - BT0827 0.69 -3.1 1,022,900 - -2.1 1,022,982 - -0.1 1,022,982 - -0.8 1,022,996 - -1.4 1,022,997 + +2.2 1,023,061 + BT0828 0.13 +0.6 1,023,187 + BT0828 0.36 -0.8 1,023,398 - BT0828 0.74 +0.7 1,023,642 + +0.2 1,023,696 - BT0829 0.11 -2.2 1,023,880 + BT0829 0.25 -2.0 1,023,895 + BT0829 0.26 +1.1
Or see this region's nucleotide sequence