Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4860

Experiment: KB with Huperzine A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4859 and Psyr_4860 are separated by 29 nucleotidesPsyr_4860 and Psyr_4861 are separated by 711 nucleotides Psyr_4859: Psyr_4859 - ISPsy8, transposase OrfA, at 5,767,398 to 5,767,913 _4859 Psyr_4860: Psyr_4860 - Integrase, catalytic region, at 5,767,943 to 5,768,749 _4860 Psyr_4861: Psyr_4861 - Binding-protein-dependent transport systems inner membrane component, at 5,769,461 to 5,770,342 _4861 Position (kb) 5767 5768 5769Strain fitness (log2 ratio) -1 0 1at 5767.339 kb on + strandat 5767.339 kb on + strandat 5767.383 kb on - strandat 5768.498 kb on + strand, within Psyr_4860at 5769.024 kb on + strandat 5769.268 kb on + strandat 5769.268 kb on + strandat 5769.268 kb on + strandat 5769.268 kb on + strandat 5769.297 kb on + strandat 5769.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
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5,767,339 + -1.1
5,767,339 + +0.6
5,767,383 - -1.1
5,768,498 + Psyr_4860 0.69 -0.6
5,769,024 + +0.1
5,769,268 + -0.0
5,769,268 + +0.8
5,769,268 + -0.8
5,769,268 + +0.7
5,769,297 + -1.1
5,769,297 + +0.9

Or see this region's nucleotide sequence