Experiment: KB with Huperzine A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4279 and Psyr_4280 are separated by 91 nucleotides Psyr_4280 and Psyr_4281 are separated by 21 nucleotides Psyr_4281 and Psyr_4282 are separated by 3 nucleotides
Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314
_4279
Psyr_4280: Psyr_4280 - conserved hypothetical protein, at 5,104,406 to 5,104,573
_4280
Psyr_4281: Psyr_4281 - cytochrome bd quinol oxidase subunit 2 apoprotein, at 5,104,595 to 5,105,602
_4281
Psyr_4282: Psyr_4282 - cytochrome bd quinol oxidase subunit 1 apoprotein, at 5,105,606 to 5,107,045
_4282
Position (kb) 5104
5105
5106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.920 kb on + strand, within Psyr_4279 at 5103.961 kb on + strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.596 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.820 kb on + strand, within Psyr_4281 at 5104.820 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.352 kb on + strand, within Psyr_4281 at 5105.377 kb on - strand, within Psyr_4281 at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.607 kb on + strand at 5105.607 kb on + strand at 5105.607 kb on + strand at 5105.608 kb on - strand at 5105.728 kb on - strand at 5105.728 kb on - strand at 5105.728 kb on - strand at 5105.728 kb on - strand at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.764 kb on - strand, within Psyr_4282 at 5105.764 kb on - strand, within Psyr_4282 at 5105.764 kb on - strand, within Psyr_4282 at 5105.794 kb on - strand, within Psyr_4282 at 5105.877 kb on + strand, within Psyr_4282 at 5105.967 kb on + strand, within Psyr_4282 at 5105.968 kb on - strand, within Psyr_4282 at 5105.989 kb on - strand, within Psyr_4282 at 5106.094 kb on + strand, within Psyr_4282 at 5106.095 kb on - strand, within Psyr_4282 at 5106.192 kb on + strand, within Psyr_4282 at 5106.193 kb on - strand, within Psyr_4282 at 5106.193 kb on - strand, within Psyr_4282 at 5106.199 kb on + strand, within Psyr_4282 at 5106.200 kb on - strand, within Psyr_4282 at 5106.200 kb on - strand, within Psyr_4282
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM remove 5,103,667 + Psyr_4279 0.42 -1.1 5,103,667 + Psyr_4279 0.42 -0.4 5,103,667 + Psyr_4279 0.42 +0.1 5,103,667 + Psyr_4279 0.42 -1.7 5,103,667 + Psyr_4279 0.42 -0.4 5,103,667 + Psyr_4279 0.42 -2.7 5,103,667 + Psyr_4279 0.42 +0.6 5,103,668 - Psyr_4279 0.42 -0.2 5,103,668 - Psyr_4279 0.42 +1.2 5,103,668 - Psyr_4279 0.42 +1.2 5,103,668 - Psyr_4279 0.42 +0.0 5,103,668 - Psyr_4279 0.42 +0.3 5,103,668 - Psyr_4279 0.42 -0.2 5,103,668 - Psyr_4279 0.42 +0.8 5,103,668 - Psyr_4279 0.42 -0.2 5,103,668 - Psyr_4279 0.42 -1.1 5,103,668 - Psyr_4279 0.42 -1.5 5,103,671 + Psyr_4279 0.43 -1.2 5,103,671 + Psyr_4279 0.43 +1.1 5,103,671 + Psyr_4279 0.43 +0.8 5,103,671 + Psyr_4279 0.43 -0.2 5,103,672 - Psyr_4279 0.43 -0.0 5,103,672 - Psyr_4279 0.43 -0.0 5,103,672 - Psyr_4279 0.43 -0.6 5,103,672 - Psyr_4279 0.43 +1.7 5,103,920 + Psyr_4279 0.65 -0.3 5,103,961 + Psyr_4279 0.69 +1.4 5,103,962 - Psyr_4279 0.69 -0.5 5,103,962 - Psyr_4279 0.69 +1.0 5,103,962 - Psyr_4279 0.69 +0.4 5,103,962 - Psyr_4279 0.69 +0.4 5,104,201 + Psyr_4279 0.90 +1.8 5,104,201 + Psyr_4279 0.90 -0.3 5,104,201 + Psyr_4279 0.90 -1.0 5,104,201 + Psyr_4279 0.90 -0.7 5,104,201 + Psyr_4279 0.90 +0.5 5,104,201 + Psyr_4279 0.90 +0.7 5,104,202 - +0.4 5,104,202 - +0.1 5,104,202 - +0.7 5,104,202 - -1.6 5,104,202 - -0.3 5,104,202 - -0.1 5,104,202 - +1.0 5,104,596 + -0.5 5,104,638 + -0.6 5,104,638 + +1.2 5,104,638 + -0.4 5,104,638 + +1.6 5,104,638 + +0.3 5,104,638 + -0.4 5,104,638 + +0.8 5,104,638 + -0.1 5,104,639 - +0.6 5,104,639 - +1.6 5,104,639 - -1.0 5,104,639 - +1.3 5,104,639 - +1.6 5,104,639 - +0.0 5,104,639 - -0.2 5,104,639 - +0.3 5,104,641 + +0.3 5,104,641 + -0.2 5,104,641 + -0.4 5,104,641 + +0.6 5,104,641 + +0.8 5,104,641 + +0.1 5,104,642 - +1.1 5,104,642 - -2.4 5,104,642 - +0.9 5,104,820 + Psyr_4281 0.22 +1.4 5,104,820 + Psyr_4281 0.22 +0.2 5,104,869 + Psyr_4281 0.27 +0.5 5,104,869 + Psyr_4281 0.27 -0.6 5,104,869 + Psyr_4281 0.27 -0.4 5,104,869 + Psyr_4281 0.27 +0.4 5,104,869 + Psyr_4281 0.27 -0.3 5,104,869 + Psyr_4281 0.27 -1.9 5,104,869 + Psyr_4281 0.27 -0.9 5,104,869 + Psyr_4281 0.27 -0.3 5,104,869 + Psyr_4281 0.27 +0.4 5,104,869 + Psyr_4281 0.27 +0.4 5,104,869 + Psyr_4281 0.27 +0.9 5,104,869 + Psyr_4281 0.27 +0.1 5,104,869 + Psyr_4281 0.27 +0.1 5,104,869 + Psyr_4281 0.27 +1.0 5,104,869 + Psyr_4281 0.27 +0.5 5,104,869 + Psyr_4281 0.27 +1.0 5,104,870 - Psyr_4281 0.27 +1.0 5,104,870 - Psyr_4281 0.27 -0.2 5,104,870 - Psyr_4281 0.27 -1.2 5,104,870 - Psyr_4281 0.27 -0.6 5,104,870 - Psyr_4281 0.27 +1.2 5,104,870 - Psyr_4281 0.27 +0.4 5,104,870 - Psyr_4281 0.27 -3.4 5,104,870 - Psyr_4281 0.27 +1.0 5,104,870 - Psyr_4281 0.27 +1.3 5,104,870 - Psyr_4281 0.27 -0.5 5,104,870 - Psyr_4281 0.27 +0.1 5,104,870 - Psyr_4281 0.27 +0.6 5,104,870 - Psyr_4281 0.27 +0.5 5,104,870 - Psyr_4281 0.27 -0.1 5,104,870 - Psyr_4281 0.27 +0.7 5,104,870 - Psyr_4281 0.27 +0.3 5,104,870 - Psyr_4281 0.27 +0.6 5,104,870 - Psyr_4281 0.27 -0.5 5,104,870 - Psyr_4281 0.27 +1.9 5,104,870 - Psyr_4281 0.27 -0.4 5,104,870 - Psyr_4281 0.27 +0.8 5,104,870 - Psyr_4281 0.27 -0.8 5,104,870 - Psyr_4281 0.27 -0.2 5,104,870 - Psyr_4281 0.27 +0.8 5,104,870 - Psyr_4281 0.27 -0.4 5,104,870 - Psyr_4281 0.27 +0.0 5,104,870 - Psyr_4281 0.27 -0.5 5,105,193 + Psyr_4281 0.59 +2.0 5,105,193 + Psyr_4281 0.59 +0.3 5,105,193 + Psyr_4281 0.59 -0.1 5,105,193 + Psyr_4281 0.59 +0.4 5,105,193 + Psyr_4281 0.59 -0.7 5,105,193 + Psyr_4281 0.59 -0.5 5,105,193 + Psyr_4281 0.59 +1.4 5,105,193 + Psyr_4281 0.59 +0.9 5,105,193 + Psyr_4281 0.59 +0.7 5,105,193 + Psyr_4281 0.59 -0.3 5,105,193 + Psyr_4281 0.59 +0.5 5,105,193 + Psyr_4281 0.59 -1.5 5,105,193 + Psyr_4281 0.59 -0.5 5,105,194 - Psyr_4281 0.59 +0.9 5,105,194 - Psyr_4281 0.59 -1.6 5,105,194 - Psyr_4281 0.59 +1.3 5,105,194 - Psyr_4281 0.59 +0.2 5,105,194 - Psyr_4281 0.59 +0.1 5,105,194 - Psyr_4281 0.59 -0.3 5,105,194 - Psyr_4281 0.59 +1.8 5,105,194 - Psyr_4281 0.59 +0.5 5,105,194 - Psyr_4281 0.59 +0.2 5,105,194 - Psyr_4281 0.59 -0.4 5,105,194 - Psyr_4281 0.59 -0.0 5,105,352 + Psyr_4281 0.75 +0.2 5,105,377 - Psyr_4281 0.78 -1.5 5,105,544 + +0.6 5,105,544 + +0.2 5,105,544 + +1.5 5,105,544 + +1.4 5,105,544 + +0.5 5,105,544 + -0.3 5,105,544 + -1.2 5,105,544 + +1.4 5,105,544 + -1.1 5,105,545 - -0.7 5,105,545 - -0.6 5,105,545 - -0.3 5,105,545 - -1.1 5,105,545 - +0.4 5,105,545 - -2.8 5,105,545 - +1.0 5,105,545 - +1.2 5,105,545 - -0.7 5,105,545 - +0.2 5,105,545 - +0.2 5,105,545 - +0.4 5,105,545 - -1.1 5,105,545 - -0.4 5,105,607 + -1.3 5,105,607 + +0.5 5,105,607 + -0.8 5,105,608 - -1.2 5,105,728 - +1.7 5,105,728 - +1.4 5,105,728 - -0.6 5,105,728 - -0.9 5,105,763 + Psyr_4282 0.11 -0.7 5,105,763 + Psyr_4282 0.11 -0.5 5,105,763 + Psyr_4282 0.11 +1.6 5,105,763 + Psyr_4282 0.11 -0.6 5,105,763 + Psyr_4282 0.11 +0.8 5,105,764 - Psyr_4282 0.11 -0.9 5,105,764 - Psyr_4282 0.11 +0.2 5,105,764 - Psyr_4282 0.11 -0.4 5,105,794 - Psyr_4282 0.13 +0.4 5,105,877 + Psyr_4282 0.19 -1.3 5,105,967 + Psyr_4282 0.25 +0.4 5,105,968 - Psyr_4282 0.25 -0.1 5,105,989 - Psyr_4282 0.27 +0.7 5,106,094 + Psyr_4282 0.34 -1.2 5,106,095 - Psyr_4282 0.34 +0.6 5,106,192 + Psyr_4282 0.41 -0.5 5,106,193 - Psyr_4282 0.41 -0.3 5,106,193 - Psyr_4282 0.41 -0.1 5,106,199 + Psyr_4282 0.41 +1.4 5,106,200 - Psyr_4282 0.41 +1.4 5,106,200 - Psyr_4282 0.41 -1.3
Or see this region's nucleotide sequence