Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3240

Experiment: KB with Huperzine A 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3239 and Psyr_3240 are separated by 327 nucleotidesPsyr_3240 and Psyr_3241 are separated by 109 nucleotides Psyr_3239: Psyr_3239 - Short chain fatty acid transporter, at 3,877,262 to 3,878,680 _3239 Psyr_3240: Psyr_3240 - CTP synthase, at 3,879,008 to 3,879,730 _3240 Psyr_3241: Psyr_3241 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 3,879,840 to 3,880,772 _3241 Position (kb) 3879 3880Strain fitness (log2 ratio) -2 -1 0 1 2at 3878.119 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.120 kb on - strand, within Psyr_3239at 3878.124 kb on - strand, within Psyr_3239at 3878.303 kb on + strand, within Psyr_3239at 3878.303 kb on + strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.341 kb on + strand, within Psyr_3239at 3878.342 kb on - strand, within Psyr_3239at 3878.342 kb on - strand, within Psyr_3239at 3878.342 kb on - strand, within Psyr_3239at 3878.366 kb on + strand, within Psyr_3239at 3878.366 kb on + strand, within Psyr_3239at 3878.367 kb on - strand, within Psyr_3239at 3878.367 kb on - strand, within Psyr_3239at 3878.460 kb on - strand, within Psyr_3239at 3878.478 kb on + strand, within Psyr_3239at 3878.486 kb on + strand, within Psyr_3239at 3878.486 kb on + strand, within Psyr_3239at 3878.486 kb on + strand, within Psyr_3239at 3878.487 kb on - strand, within Psyr_3239at 3878.487 kb on - strand, within Psyr_3239at 3878.487 kb on - strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.550 kb on + strandat 3878.657 kb on + strandat 3878.657 kb on + strandat 3878.657 kb on + strandat 3878.658 kb on - strandat 3878.658 kb on - strandat 3878.658 kb on - strandat 3878.658 kb on - strandat 3878.701 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3879.014 kb on + strandat 3879.015 kb on - strandat 3879.108 kb on + strand, within Psyr_3240at 3879.108 kb on + strand, within Psyr_3240at 3879.109 kb on - strand, within Psyr_3240at 3879.408 kb on + strand, within Psyr_3240at 3879.771 kb on - strandat 3879.771 kb on - strandat 3879.772 kb on + strandat 3879.773 kb on - strandat 3879.773 kb on - strandat 3879.773 kb on - strandat 3880.237 kb on + strand, within Psyr_3241at 3880.238 kb on - strand, within Psyr_3241at 3880.454 kb on + strand, within Psyr_3241at 3880.454 kb on + strand, within Psyr_3241at 3880.454 kb on + strand, within Psyr_3241at 3880.455 kb on - strand, within Psyr_3241at 3880.455 kb on - strand, within Psyr_3241at 3880.455 kb on - strand, within Psyr_3241

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
remove
3,878,119 + Psyr_3239 0.60 +0.5
3,878,119 + Psyr_3239 0.60 -0.9
3,878,119 + Psyr_3239 0.60 +0.2
3,878,119 + Psyr_3239 0.60 -1.8
3,878,120 - Psyr_3239 0.60 +0.2
3,878,124 - Psyr_3239 0.61 -0.1
3,878,303 + Psyr_3239 0.73 -0.1
3,878,303 + Psyr_3239 0.73 +0.9
3,878,304 - Psyr_3239 0.73 +0.7
3,878,304 - Psyr_3239 0.73 +0.7
3,878,304 - Psyr_3239 0.73 +1.6
3,878,304 - Psyr_3239 0.73 -0.5
3,878,304 - Psyr_3239 0.73 -1.6
3,878,341 + Psyr_3239 0.76 -1.1
3,878,342 - Psyr_3239 0.76 +1.0
3,878,342 - Psyr_3239 0.76 +0.4
3,878,342 - Psyr_3239 0.76 -0.9
3,878,366 + Psyr_3239 0.78 -0.9
3,878,366 + Psyr_3239 0.78 +0.1
3,878,367 - Psyr_3239 0.78 +0.5
3,878,367 - Psyr_3239 0.78 +0.5
3,878,460 - Psyr_3239 0.84 +0.3
3,878,478 + Psyr_3239 0.86 -0.4
3,878,486 + Psyr_3239 0.86 +0.2
3,878,486 + Psyr_3239 0.86 -0.4
3,878,486 + Psyr_3239 0.86 -0.2
3,878,487 - Psyr_3239 0.86 +0.5
3,878,487 - Psyr_3239 0.86 +0.5
3,878,487 - Psyr_3239 0.86 -0.2
3,878,528 + Psyr_3239 0.89 +1.9
3,878,528 + Psyr_3239 0.89 +0.6
3,878,528 + Psyr_3239 0.89 -0.4
3,878,528 + Psyr_3239 0.89 +0.9
3,878,529 - Psyr_3239 0.89 -0.4
3,878,529 - Psyr_3239 0.89 -0.2
3,878,529 - Psyr_3239 0.89 +0.6
3,878,529 - Psyr_3239 0.89 -0.6
3,878,550 + -0.6
3,878,657 + -0.8
3,878,657 + -0.7
3,878,657 + -1.3
3,878,658 - +0.3
3,878,658 - -0.5
3,878,658 - +0.1
3,878,658 - +0.2
3,878,701 + +0.4
3,878,983 + -0.7
3,878,983 + -0.1
3,878,983 + +1.2
3,878,983 + -1.5
3,878,983 + -1.1
3,878,984 - +1.2
3,878,984 - +0.6
3,878,984 - -1.7
3,878,984 - -1.2
3,879,014 + +0.2
3,879,015 - +0.1
3,879,108 + Psyr_3240 0.14 -1.4
3,879,108 + Psyr_3240 0.14 -1.2
3,879,109 - Psyr_3240 0.14 -0.3
3,879,408 + Psyr_3240 0.55 -0.3
3,879,771 - -0.1
3,879,771 - +0.8
3,879,772 + +0.5
3,879,773 - +0.0
3,879,773 - +1.0
3,879,773 - -2.1
3,880,237 + Psyr_3241 0.43 +0.1
3,880,238 - Psyr_3241 0.43 +1.4
3,880,454 + Psyr_3241 0.66 +0.4
3,880,454 + Psyr_3241 0.66 +0.6
3,880,454 + Psyr_3241 0.66 +0.2
3,880,455 - Psyr_3241 0.66 +0.1
3,880,455 - Psyr_3241 0.66 +1.2
3,880,455 - Psyr_3241 0.66 +0.2

Or see this region's nucleotide sequence