Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3104

Experiment: KB with Huperzine A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3102 and Psyr_3103 are separated by 0 nucleotidesPsyr_3103 and Psyr_3104 overlap by 1 nucleotidesPsyr_3104 and Psyr_3105 overlap by 4 nucleotides Psyr_3102: Psyr_3102 - transcriptional regulator, LysR family, at 3,719,982 to 3,720,911 _3102 Psyr_3103: Psyr_3103 - phosphate ABC transporter ATP-binding protein, PhoT family, at 3,720,912 to 3,721,691 _3103 Psyr_3104: Psyr_3104 - phosphate ABC transporter membrane protein 2, PhoT family, at 3,721,691 to 3,722,575 _3104 Psyr_3105: Psyr_3105 - phosphate ABC transporter membrane protein 1, PhoT family, at 3,722,572 to 3,723,567 _3105 Position (kb) 3721 3722 3723Strain fitness (log2 ratio) -2 -1 0 1 2at 3720.759 kb on + strand, within Psyr_3102at 3720.760 kb on - strand, within Psyr_3102at 3720.760 kb on - strand, within Psyr_3102at 3720.760 kb on - strand, within Psyr_3102at 3720.760 kb on - strand, within Psyr_3102at 3720.760 kb on - strand, within Psyr_3102at 3720.934 kb on + strandat 3720.934 kb on + strandat 3720.934 kb on + strandat 3720.935 kb on - strandat 3720.935 kb on - strandat 3720.935 kb on - strandat 3721.024 kb on + strand, within Psyr_3103at 3721.024 kb on + strand, within Psyr_3103at 3721.025 kb on - strand, within Psyr_3103at 3721.090 kb on - strand, within Psyr_3103at 3721.090 kb on - strand, within Psyr_3103at 3721.363 kb on + strand, within Psyr_3103at 3721.435 kb on + strand, within Psyr_3103at 3721.498 kb on + strand, within Psyr_3103at 3721.508 kb on - strand, within Psyr_3103at 3721.508 kb on - strand, within Psyr_3103at 3721.718 kb on + strandat 3721.745 kb on + strandat 3721.746 kb on - strandat 3721.941 kb on - strand, within Psyr_3104at 3722.181 kb on + strand, within Psyr_3104at 3722.181 kb on + strand, within Psyr_3104at 3722.263 kb on - strand, within Psyr_3104at 3722.504 kb on + strandat 3722.569 kb on + strandat 3722.576 kb on - strandat 3722.693 kb on + strand, within Psyr_3105at 3722.693 kb on + strand, within Psyr_3105at 3722.862 kb on - strand, within Psyr_3105at 3722.913 kb on - strand, within Psyr_3105at 3723.146 kb on + strand, within Psyr_3105at 3723.146 kb on + strand, within Psyr_3105at 3723.147 kb on - strand, within Psyr_3105at 3723.147 kb on - strand, within Psyr_3105at 3723.417 kb on + strand, within Psyr_3105at 3723.417 kb on + strand, within Psyr_3105at 3723.417 kb on + strand, within Psyr_3105at 3723.417 kb on + strand, within Psyr_3105at 3723.418 kb on - strand, within Psyr_3105at 3723.418 kb on - strand, within Psyr_3105at 3723.418 kb on - strand, within Psyr_3105at 3723.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
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3,720,759 + Psyr_3102 0.84 -0.5
3,720,760 - Psyr_3102 0.84 -0.6
3,720,760 - Psyr_3102 0.84 -0.3
3,720,760 - Psyr_3102 0.84 -0.7
3,720,760 - Psyr_3102 0.84 -0.4
3,720,760 - Psyr_3102 0.84 -2.3
3,720,934 + -1.1
3,720,934 + -1.2
3,720,934 + -0.2
3,720,935 - -1.7
3,720,935 - -0.5
3,720,935 - -1.0
3,721,024 + Psyr_3103 0.14 +1.2
3,721,024 + Psyr_3103 0.14 -0.4
3,721,025 - Psyr_3103 0.14 +0.2
3,721,090 - Psyr_3103 0.23 -0.0
3,721,090 - Psyr_3103 0.23 -0.0
3,721,363 + Psyr_3103 0.58 -0.5
3,721,435 + Psyr_3103 0.67 +1.0
3,721,498 + Psyr_3103 0.75 +0.1
3,721,508 - Psyr_3103 0.76 +0.6
3,721,508 - Psyr_3103 0.76 +1.3
3,721,718 + +0.7
3,721,745 + +0.4
3,721,746 - -0.6
3,721,941 - Psyr_3104 0.28 -1.3
3,722,181 + Psyr_3104 0.55 -0.5
3,722,181 + Psyr_3104 0.55 -0.4
3,722,263 - Psyr_3104 0.65 -2.3
3,722,504 + -1.0
3,722,569 + +1.0
3,722,576 - -1.1
3,722,693 + Psyr_3105 0.12 -0.1
3,722,693 + Psyr_3105 0.12 -1.8
3,722,862 - Psyr_3105 0.29 +1.2
3,722,913 - Psyr_3105 0.34 +0.5
3,723,146 + Psyr_3105 0.58 +1.6
3,723,146 + Psyr_3105 0.58 +0.5
3,723,147 - Psyr_3105 0.58 +0.0
3,723,147 - Psyr_3105 0.58 -0.0
3,723,417 + Psyr_3105 0.85 -0.2
3,723,417 + Psyr_3105 0.85 -1.1
3,723,417 + Psyr_3105 0.85 +1.9
3,723,417 + Psyr_3105 0.85 -0.1
3,723,418 - Psyr_3105 0.85 -1.5
3,723,418 - Psyr_3105 0.85 -0.3
3,723,418 - Psyr_3105 0.85 -0.3
3,723,548 + +0.3

Or see this region's nucleotide sequence