Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2916

Experiment: KB with Huperzine A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2915 and Psyr_2916 are separated by 160 nucleotidesPsyr_2916 and Psyr_2917 are separated by 73 nucleotides Psyr_2915: Psyr_2915 - transcriptional regulator, AraC family with amidase-like domain protein, at 3,503,682 to 3,504,659 _2915 Psyr_2916: Psyr_2916 - Substrate-binding region of ABC-type glycine betaine transport system, at 3,504,820 to 3,505,764 _2916 Psyr_2917: Psyr_2917 - Prokaryotic protein of unknown function DUF849, at 3,505,838 to 3,506,725 _2917 Position (kb) 3504 3505 3506Strain fitness (log2 ratio) -2 -1 0 1at 3503.851 kb on + strand, within Psyr_2915at 3503.852 kb on - strand, within Psyr_2915at 3504.069 kb on + strand, within Psyr_2915at 3504.069 kb on + strand, within Psyr_2915at 3504.070 kb on - strand, within Psyr_2915at 3504.070 kb on - strand, within Psyr_2915at 3504.168 kb on - strand, within Psyr_2915at 3504.572 kb on + strandat 3504.665 kb on + strandat 3504.755 kb on - strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.884 kb on + strandat 3504.885 kb on - strandat 3504.885 kb on - strandat 3504.885 kb on - strandat 3504.885 kb on - strandat 3504.930 kb on - strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.189 kb on + strand, within Psyr_2916at 3505.394 kb on + strand, within Psyr_2916at 3505.465 kb on + strand, within Psyr_2916at 3505.465 kb on + strand, within Psyr_2916at 3505.540 kb on + strand, within Psyr_2916at 3505.540 kb on + strand, within Psyr_2916at 3505.540 kb on + strand, within Psyr_2916at 3505.541 kb on - strand, within Psyr_2916at 3505.826 kb on - strandat 3506.050 kb on + strand, within Psyr_2917at 3506.051 kb on - strand, within Psyr_2917at 3506.051 kb on - strand, within Psyr_2917at 3506.257 kb on + strand, within Psyr_2917at 3506.257 kb on + strand, within Psyr_2917at 3506.258 kb on - strand, within Psyr_2917at 3506.258 kb on - strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.261 kb on + strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.262 kb on - strand, within Psyr_2917at 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.739 kb on + strandat 3506.740 kb on - strandat 3506.740 kb on - strandat 3506.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
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3,503,851 + Psyr_2915 0.17 +0.6
3,503,852 - Psyr_2915 0.17 -1.5
3,504,069 + Psyr_2915 0.40 +0.9
3,504,069 + Psyr_2915 0.40 -0.6
3,504,070 - Psyr_2915 0.40 +0.6
3,504,070 - Psyr_2915 0.40 +1.0
3,504,168 - Psyr_2915 0.50 -0.1
3,504,572 + +1.0
3,504,665 + -0.1
3,504,755 - +0.4
3,504,884 + -0.1
3,504,884 + -0.0
3,504,884 + +0.2
3,504,884 + -0.5
3,504,884 + +0.1
3,504,885 - +0.2
3,504,885 - -0.3
3,504,885 - -0.6
3,504,885 - +1.7
3,504,930 - Psyr_2916 0.12 +0.7
3,505,189 + Psyr_2916 0.39 +0.8
3,505,189 + Psyr_2916 0.39 -0.1
3,505,189 + Psyr_2916 0.39 -0.3
3,505,394 + Psyr_2916 0.61 -0.1
3,505,465 + Psyr_2916 0.68 +1.1
3,505,465 + Psyr_2916 0.68 -1.9
3,505,540 + Psyr_2916 0.76 +0.1
3,505,540 + Psyr_2916 0.76 +0.6
3,505,540 + Psyr_2916 0.76 +0.4
3,505,541 - Psyr_2916 0.76 +0.9
3,505,826 - -0.2
3,506,050 + Psyr_2917 0.24 -0.6
3,506,051 - Psyr_2917 0.24 -0.3
3,506,051 - Psyr_2917 0.24 -0.3
3,506,257 + Psyr_2917 0.47 -1.8
3,506,257 + Psyr_2917 0.47 -0.6
3,506,258 - Psyr_2917 0.47 +0.7
3,506,258 - Psyr_2917 0.47 -0.1
3,506,261 + Psyr_2917 0.48 +0.6
3,506,261 + Psyr_2917 0.48 -0.9
3,506,261 + Psyr_2917 0.48 +0.4
3,506,261 + Psyr_2917 0.48 +0.7
3,506,261 + Psyr_2917 0.48 -0.5
3,506,261 + Psyr_2917 0.48 +1.0
3,506,261 + Psyr_2917 0.48 +1.5
3,506,261 + Psyr_2917 0.48 +0.0
3,506,261 + Psyr_2917 0.48 +0.8
3,506,261 + Psyr_2917 0.48 +0.6
3,506,262 - Psyr_2917 0.48 -0.2
3,506,262 - Psyr_2917 0.48 -0.3
3,506,262 - Psyr_2917 0.48 -0.6
3,506,262 - Psyr_2917 0.48 -1.2
3,506,262 - Psyr_2917 0.48 +1.4
3,506,262 - Psyr_2917 0.48 +0.1
3,506,262 - Psyr_2917 0.48 -2.7
3,506,262 - Psyr_2917 0.48 -0.2
3,506,739 + -0.8
3,506,739 + -0.7
3,506,739 + -0.1
3,506,739 + +1.2
3,506,739 + -0.6
3,506,739 + +0.2
3,506,739 + -1.1
3,506,740 - -0.4
3,506,740 - -1.3
3,506,740 - -0.3

Or see this region's nucleotide sequence