Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2840

Experiment: KB with Huperzine A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Huperzine A 10 mM
3,412,280	+				-1.6
3,412,280	+				+0.3
3,412,280	+				-0.6
3,412,280	+				+0.1
3,412,280	+				+0.1
3,412,280	+				-0.7
3,412,280	+				+0.7
3,412,280	+				+0.3
3,412,280	+				+0.7
3,412,281	-				+1.1
3,412,281	-				-0.3
3,412,281	-				-0.7
3,412,281	-				+0.6
3,412,281	-				-0.1
3,412,281	-				+0.7
3,412,301	+				+1.6
3,412,302	-				+0.1
3,412,302	-				-0.2
3,412,302	-				+0.0
3,412,476	+		Psyr_2839	0.24	-1.4
3,412,476	+		Psyr_2839	0.24	+0.5
3,412,476	+		Psyr_2839	0.24	+1.7
3,412,476	+		Psyr_2839	0.24	-0.3
3,412,476	+		Psyr_2839	0.24	+0.7
3,412,476	+		Psyr_2839	0.24	+0.3
3,412,476	+		Psyr_2839	0.24	+0.3
3,412,476	+		Psyr_2839	0.24	+0.3
3,412,476	+		Psyr_2839	0.24	+1.0
3,412,476	+		Psyr_2839	0.24	+0.5
3,412,476	+		Psyr_2839	0.24	+1.1
3,412,476	+		Psyr_2839	0.24	-0.1
3,412,477	-				+2.8
3,412,623	+		Psyr_2839	0.42	+0.9
3,412,670	+		Psyr_2839	0.48	-0.3
3,412,671	-		Psyr_2839	0.48	+1.8
3,413,099	-				+0.5
3,413,099	-				-2.1
3,413,231	+				-0.9
3,413,381	-		Psyr_2840	0.31	-0.6
3,413,389	-		Psyr_2840	0.32	+0.7
3,413,389	-		Psyr_2840	0.32	-0.7
3,413,527	-		Psyr_2840	0.56	-0.8
3,413,569	+		Psyr_2840	0.63	-0.3
3,413,570	-		Psyr_2840	0.63	+2.3
3,413,632	+		Psyr_2840	0.73	-1.2
3,413,633	-		Psyr_2840	0.74	-1.3
3,413,659	+		Psyr_2840	0.78	-2.5
3,413,660	-		Psyr_2840	0.78	+1.3
3,413,792	+				+1.3
3,413,792	+				-0.6
3,413,792	+				+1.3
3,413,793	-				+0.1
3,413,793	-				+1.3
3,413,793	-				-0.3
3,413,827	+				-0.3
3,413,827	+				+0.7
3,413,827	+				-0.7
3,413,827	+				+0.0
3,413,827	+				+0.1
3,413,827	+				+0.4
3,413,827	+				+1.3
3,413,827	+				-0.5
3,413,827	+				+0.4
3,413,827	+				-0.9
3,413,827	+				-0.3
3,413,827	+				-0.3
3,413,828	-				+0.6
3,413,828	-				-1.7
3,413,828	-				+1.3
3,413,828	-				-1.5
3,413,828	-				-1.0
3,413,828	-				+1.3
3,413,828	-				+1.0
3,413,828	-				-0.3
3,413,828	-				+0.2
3,413,828	-				-0.1
3,413,828	-				+1.2
3,413,828	-				+0.3
3,413,828	-				-0.7
3,413,828	-				-0.5
3,413,828	-				-0.9
3,413,828	-				+0.1
3,413,829	+				+0.5
3,413,829	+				-0.3
3,413,829	+				-1.1
3,413,830	-				-0.2
3,413,830	-				-0.3
3,413,830	-				-0.7
3,413,830	-				-0.7
3,413,830	-				+0.8
3,413,906	+				-0.6
3,413,906	+				-1.1
3,413,906	+				+0.5
3,413,907	-				-1.6
3,413,907	-				-0.1
3,413,927	+				+1.3
3,413,927	+				+0.9
3,413,927	+				-1.1
3,413,927	+				+0.1
3,413,927	+				-1.3
3,413,927	+				-0.5
3,413,927	+				-1.2
3,413,928	-				+0.3
3,413,928	-				+2.0
3,413,928	-				+1.1
3,413,971	+		Psyr_2841	0.13	-0.4
3,413,971	+		Psyr_2841	0.13	-0.9
3,413,971	+		Psyr_2841	0.13	+0.3
3,413,971	+		Psyr_2841	0.13	-2.7
3,413,971	+		Psyr_2841	0.13	+0.2
3,414,056	+		Psyr_2841	0.27	+1.6
3,414,056	+		Psyr_2841	0.27	+1.7
3,414,056	+		Psyr_2841	0.27	+1.8
3,414,095	+		Psyr_2841	0.33	-0.5
3,414,095	+		Psyr_2841	0.33	-1.4
3,414,095	+		Psyr_2841	0.33	-0.7
3,414,095	+		Psyr_2841	0.33	-0.4
3,414,095	+		Psyr_2841	0.33	+0.1
3,414,095	+		Psyr_2841	0.33	-1.6
3,414,095	+		Psyr_2841	0.33	-1.2
3,414,096	-		Psyr_2841	0.33	+0.4
3,414,096	-		Psyr_2841	0.33	+2.5
3,414,096	-		Psyr_2841	0.33	+0.7
3,414,096	-		Psyr_2841	0.33	+1.4
3,414,096	-		Psyr_2841	0.33	-0.7
3,414,096	-		Psyr_2841	0.33	-0.3
3,414,096	-		Psyr_2841	0.33	+0.7
3,414,096	-		Psyr_2841	0.33	-0.2
3,414,156	+		Psyr_2841	0.43	+0.3
3,414,157	-		Psyr_2841	0.43	-0.2
3,414,157	-		Psyr_2841	0.43	-0.1
3,414,157	-		Psyr_2841	0.43	+2.5
3,414,157	-		Psyr_2841	0.43	-0.7
3,414,299	+		Psyr_2841	0.67	+1.3
3,414,299	+		Psyr_2841	0.67	-0.9
3,414,300	-		Psyr_2841	0.67	+0.5
3,414,342	+		Psyr_2841	0.74	-1.3
3,414,342	+		Psyr_2841	0.74	+0.7
3,414,342	+		Psyr_2841	0.74	-0.5
3,414,342	+		Psyr_2841	0.74	+0.7
3,414,342	+		Psyr_2841	0.74	-1.2
3,414,342	+		Psyr_2841	0.74	-1.1
3,414,342	+		Psyr_2841	0.74	-0.3
3,414,343	-		Psyr_2841	0.74	+0.2
3,414,343	-		Psyr_2841	0.74	+1.9
3,414,343	-		Psyr_2841	0.74	+0.1
3,414,343	-		Psyr_2841	0.74	-0.6
3,414,411	+		Psyr_2841	0.85	-2.1
3,414,411	+		Psyr_2841	0.85	-1.5
3,414,412	-		Psyr_2841	0.85	+1.8
3,414,412	-		Psyr_2841	0.85	-0.3
3,414,458	+				-1.1
3,414,458	+				-1.3
3,414,458	+				-1.3
3,414,458	+				-2.1
3,414,458	+				+1.3
3,414,459	-				-2.3
3,414,459	-				-0.3
3,414,459	-				+0.5
3,414,459	-				+0.8
3,414,513	+				-1.4
3,414,517	+				-2.2
3,414,517	+				+0.1
3,414,598	+				-0.1
3,414,598	+				-0.2
3,414,598	+				-0.1
3,414,599	-				-0.6
3,414,599	-				+0.0
3,414,599	-				-0.2
3,414,691	+		Psyr_2842	0.14	+0.4
3,414,691	+		Psyr_2842	0.14	-1.1
3,414,692	-		Psyr_2842	0.14	+0.5
3,414,692	-		Psyr_2842	0.14	-0.7
3,414,692	-		Psyr_2842	0.14	-2.3
3,414,718	-		Psyr_2842	0.17	-0.1
3,414,718	-		Psyr_2842	0.17	+2.3
3,414,718	-		Psyr_2842	0.17	+2.3
3,414,749	+		Psyr_2842	0.21	+0.3
3,414,762	-		Psyr_2842	0.22	-0.4
3,414,763	+		Psyr_2842	0.22	-1.1