Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1113

Experiment: KB with Huperzine A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1112 and Psyr_1113 are separated by 169 nucleotidesPsyr_1113 and Psyr_1114 are separated by 104 nucleotides Psyr_1112: Psyr_1112 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 1,259,672 to 1,261,123 _1112 Psyr_1113: Psyr_1113 - glucose-binding protein, at 1,261,293 to 1,262,588 _1113 Psyr_1114: Psyr_1114 - glucose ABC transporter membrane protein, at 1,262,693 to 1,263,601 _1114 Position (kb) 1261 1262 1263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1260.685 kb on + strand, within Psyr_1112at 1260.685 kb on + strand, within Psyr_1112at 1260.791 kb on + strand, within Psyr_1112at 1260.855 kb on - strand, within Psyr_1112at 1261.100 kb on + strandat 1261.100 kb on + strandat 1261.100 kb on + strandat 1261.100 kb on + strandat 1261.101 kb on - strandat 1261.101 kb on - strandat 1261.166 kb on + strandat 1261.167 kb on - strandat 1261.270 kb on + strandat 1261.270 kb on + strandat 1261.270 kb on + strandat 1261.270 kb on + strandat 1261.271 kb on - strandat 1261.271 kb on - strandat 1261.271 kb on - strandat 1261.698 kb on + strand, within Psyr_1113at 1261.699 kb on - strand, within Psyr_1113at 1261.699 kb on - strand, within Psyr_1113at 1261.710 kb on + strand, within Psyr_1113at 1261.711 kb on - strand, within Psyr_1113at 1261.802 kb on + strand, within Psyr_1113at 1261.938 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.028 kb on + strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.029 kb on - strand, within Psyr_1113at 1262.166 kb on + strand, within Psyr_1113at 1262.167 kb on - strand, within Psyr_1113at 1262.176 kb on + strand, within Psyr_1113at 1262.205 kb on - strand, within Psyr_1113at 1262.205 kb on - strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.208 kb on + strand, within Psyr_1113at 1262.209 kb on - strand, within Psyr_1113at 1262.209 kb on - strand, within Psyr_1113at 1262.209 kb on - strand, within Psyr_1113at 1262.209 kb on - strand, within Psyr_1113at 1262.210 kb on + strand, within Psyr_1113at 1262.253 kb on - strand, within Psyr_1113at 1262.373 kb on + strand, within Psyr_1113at 1262.471 kb on + strandat 1262.471 kb on + strandat 1262.471 kb on + strandat 1262.471 kb on + strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.472 kb on - strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.514 kb on + strandat 1262.515 kb on - strandat 1262.515 kb on - strandat 1262.515 kb on - strandat 1262.515 kb on - strandat 1262.515 kb on - strandat 1262.515 kb on - strandat 1262.586 kb on + strandat 1262.587 kb on - strandat 1262.672 kb on - strandat 1262.672 kb on - strandat 1262.673 kb on + strandat 1262.673 kb on + strandat 1262.673 kb on + strandat 1262.673 kb on + strandat 1262.674 kb on - strandat 1262.674 kb on - strandat 1262.787 kb on + strand, within Psyr_1114at 1262.787 kb on + strand, within Psyr_1114at 1262.787 kb on + strand, within Psyr_1114at 1262.801 kb on + strand, within Psyr_1114at 1262.802 kb on - strand, within Psyr_1114at 1262.802 kb on - strand, within Psyr_1114at 1262.808 kb on - strand, within Psyr_1114at 1262.861 kb on + strand, within Psyr_1114at 1262.861 kb on + strand, within Psyr_1114at 1262.861 kb on + strand, within Psyr_1114at 1262.862 kb on - strand, within Psyr_1114at 1262.862 kb on - strand, within Psyr_1114at 1262.862 kb on - strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.864 kb on - strand, within Psyr_1114at 1262.864 kb on - strand, within Psyr_1114at 1262.864 kb on - strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.192 kb on - strand, within Psyr_1114at 1263.192 kb on - strand, within Psyr_1114at 1263.192 kb on - strand, within Psyr_1114at 1263.324 kb on - strand, within Psyr_1114at 1263.324 kb on - strand, within Psyr_1114at 1263.324 kb on - strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.563 kb on + strandat 1263.563 kb on + strandat 1263.569 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
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1,260,685 + Psyr_1112 0.70 +1.3
1,260,685 + Psyr_1112 0.70 +0.7
1,260,791 + Psyr_1112 0.77 +1.3
1,260,855 - Psyr_1112 0.81 +0.4
1,261,100 + -2.5
1,261,100 + -0.6
1,261,100 + -0.1
1,261,100 + +0.3
1,261,101 - -1.1
1,261,101 - -0.3
1,261,166 + +1.3
1,261,167 - -1.0
1,261,270 + +0.2
1,261,270 + -1.3
1,261,270 + +0.6
1,261,270 + -0.4
1,261,271 - -0.1
1,261,271 - +3.3
1,261,271 - -0.3
1,261,698 + Psyr_1113 0.31 +0.7
1,261,699 - Psyr_1113 0.31 -0.2
1,261,699 - Psyr_1113 0.31 +1.4
1,261,710 + Psyr_1113 0.32 +0.3
1,261,711 - Psyr_1113 0.32 -0.1
1,261,802 + Psyr_1113 0.39 +1.5
1,261,938 + Psyr_1113 0.50 -0.3
1,262,028 + Psyr_1113 0.57 -0.8
1,262,028 + Psyr_1113 0.57 +0.7
1,262,028 + Psyr_1113 0.57 -0.8
1,262,028 + Psyr_1113 0.57 -3.1
1,262,028 + Psyr_1113 0.57 +1.3
1,262,028 + Psyr_1113 0.57 +0.7
1,262,028 + Psyr_1113 0.57 -0.0
1,262,028 + Psyr_1113 0.57 +0.2
1,262,028 + Psyr_1113 0.57 -1.5
1,262,028 + Psyr_1113 0.57 +1.5
1,262,028 + Psyr_1113 0.57 -0.5
1,262,028 + Psyr_1113 0.57 -0.5
1,262,028 + Psyr_1113 0.57 -0.4
1,262,028 + Psyr_1113 0.57 +1.2
1,262,028 + Psyr_1113 0.57 +0.6
1,262,029 - Psyr_1113 0.57 -0.3
1,262,029 - Psyr_1113 0.57 -0.3
1,262,029 - Psyr_1113 0.57 +1.6
1,262,029 - Psyr_1113 0.57 +0.3
1,262,029 - Psyr_1113 0.57 -0.1
1,262,029 - Psyr_1113 0.57 +0.1
1,262,029 - Psyr_1113 0.57 +0.3
1,262,029 - Psyr_1113 0.57 +0.0
1,262,166 + Psyr_1113 0.67 -0.6
1,262,167 - Psyr_1113 0.67 +0.1
1,262,176 + Psyr_1113 0.68 +0.5
1,262,205 - Psyr_1113 0.70 +1.3
1,262,205 - Psyr_1113 0.70 +1.1
1,262,208 + Psyr_1113 0.71 -0.4
1,262,208 + Psyr_1113 0.71 +0.0
1,262,208 + Psyr_1113 0.71 -0.7
1,262,208 + Psyr_1113 0.71 -1.3
1,262,208 + Psyr_1113 0.71 -0.8
1,262,208 + Psyr_1113 0.71 +0.3
1,262,208 + Psyr_1113 0.71 +0.1
1,262,209 - Psyr_1113 0.71 +1.4
1,262,209 - Psyr_1113 0.71 +1.0
1,262,209 - Psyr_1113 0.71 +0.6
1,262,209 - Psyr_1113 0.71 -0.8
1,262,210 + Psyr_1113 0.71 +0.8
1,262,253 - Psyr_1113 0.74 -0.8
1,262,373 + Psyr_1113 0.83 +0.3
1,262,471 + -0.4
1,262,471 + +0.3
1,262,471 + -0.1
1,262,471 + -0.3
1,262,472 - +1.6
1,262,472 - +0.5
1,262,472 - -0.2
1,262,472 - +0.6
1,262,472 - -2.6
1,262,472 - -1.1
1,262,472 - +0.7
1,262,472 - -0.7
1,262,514 + -0.4
1,262,514 + +0.3
1,262,514 + -1.2
1,262,514 + +1.2
1,262,514 + +0.9
1,262,514 + -0.7
1,262,514 + -1.0
1,262,514 + -0.5
1,262,514 + -0.3
1,262,514 + +0.4
1,262,514 + +0.3
1,262,514 + -0.0
1,262,515 - +1.0
1,262,515 - -0.5
1,262,515 - +1.1
1,262,515 - -0.1
1,262,515 - -0.7
1,262,515 - +0.3
1,262,586 + -1.0
1,262,587 - +0.4
1,262,672 - -0.7
1,262,672 - -0.5
1,262,673 + +0.1
1,262,673 + +0.8
1,262,673 + -1.0
1,262,673 + -0.2
1,262,674 - +0.3
1,262,674 - -0.4
1,262,787 + Psyr_1114 0.10 -2.4
1,262,787 + Psyr_1114 0.10 +0.7
1,262,787 + Psyr_1114 0.10 +0.2
1,262,801 + Psyr_1114 0.12 -0.3
1,262,802 - Psyr_1114 0.12 +0.2
1,262,802 - Psyr_1114 0.12 +0.6
1,262,808 - Psyr_1114 0.13 +0.2
1,262,861 + Psyr_1114 0.18 -0.2
1,262,861 + Psyr_1114 0.18 +0.6
1,262,861 + Psyr_1114 0.18 +0.6
1,262,862 - Psyr_1114 0.19 -0.4
1,262,862 - Psyr_1114 0.19 +0.6
1,262,862 - Psyr_1114 0.19 -1.7
1,262,863 + Psyr_1114 0.19 -1.4
1,262,863 + Psyr_1114 0.19 -1.0
1,262,863 + Psyr_1114 0.19 +0.4
1,262,863 + Psyr_1114 0.19 +0.5
1,262,863 + Psyr_1114 0.19 -0.3
1,262,863 + Psyr_1114 0.19 +2.1
1,262,864 - Psyr_1114 0.19 +2.3
1,262,864 - Psyr_1114 0.19 +0.0
1,262,864 - Psyr_1114 0.19 -1.2
1,263,037 + Psyr_1114 0.38 +0.1
1,263,037 + Psyr_1114 0.38 +1.8
1,263,037 + Psyr_1114 0.38 +1.5
1,263,037 + Psyr_1114 0.38 -2.1
1,263,037 + Psyr_1114 0.38 -0.6
1,263,038 - Psyr_1114 0.38 +0.4
1,263,038 - Psyr_1114 0.38 -0.1
1,263,038 - Psyr_1114 0.38 -1.5
1,263,038 - Psyr_1114 0.38 -0.0
1,263,038 - Psyr_1114 0.38 +1.3
1,263,038 - Psyr_1114 0.38 +0.4
1,263,038 - Psyr_1114 0.38 -1.3
1,263,041 + Psyr_1114 0.38 +0.8
1,263,041 + Psyr_1114 0.38 +0.1
1,263,041 + Psyr_1114 0.38 +0.6
1,263,041 + Psyr_1114 0.38 +0.3
1,263,041 + Psyr_1114 0.38 -1.3
1,263,041 + Psyr_1114 0.38 +0.2
1,263,041 + Psyr_1114 0.38 +0.0
1,263,041 + Psyr_1114 0.38 +1.6
1,263,041 + Psyr_1114 0.38 -0.6
1,263,041 + Psyr_1114 0.38 +1.3
1,263,042 - Psyr_1114 0.38 +0.2
1,263,042 - Psyr_1114 0.38 -0.6
1,263,042 - Psyr_1114 0.38 -0.1
1,263,042 - Psyr_1114 0.38 -0.9
1,263,042 - Psyr_1114 0.38 +0.6
1,263,042 - Psyr_1114 0.38 -0.8
1,263,042 - Psyr_1114 0.38 -0.2
1,263,042 - Psyr_1114 0.38 +0.6
1,263,042 - Psyr_1114 0.38 +1.5
1,263,042 - Psyr_1114 0.38 +0.3
1,263,192 - Psyr_1114 0.55 -1.4
1,263,192 - Psyr_1114 0.55 +0.3
1,263,192 - Psyr_1114 0.55 -2.5
1,263,324 - Psyr_1114 0.69 +1.0
1,263,324 - Psyr_1114 0.69 -1.1
1,263,324 - Psyr_1114 0.69 -1.8
1,263,473 + Psyr_1114 0.86 -0.1
1,263,473 + Psyr_1114 0.86 -0.5
1,263,473 + Psyr_1114 0.86 -2.0
1,263,473 + Psyr_1114 0.86 -2.8
1,263,474 - Psyr_1114 0.86 +1.3
1,263,474 - Psyr_1114 0.86 +1.3
1,263,474 - Psyr_1114 0.86 +1.3
1,263,474 - Psyr_1114 0.86 +0.7
1,263,563 + +1.6
1,263,563 + +0.4
1,263,569 + +0.2

Or see this region's nucleotide sequence