Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1039

Experiment: KB with Huperzine A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Huperzine A 10 mM
1,173,721	+				+0.9
1,173,806	+				-1.0
1,173,806	+				-0.2
1,173,806	+				-0.7
1,173,806	+				-1.0
1,173,806	+				-0.8
1,173,806	+				-0.5
1,173,807	-				-0.4
1,173,807	-				+0.6
1,173,807	-				-0.2
1,173,807	-				+0.5
1,173,807	-				-0.6
1,173,807	-				+0.3
1,173,807	-				+0.4
1,173,955	-				-0.4
1,174,339	+				+0.2
1,174,353	+				-0.3
1,174,458	+				-0.7
1,174,458	+				+0.9
1,174,458	+				-0.1
1,174,458	+				-0.2
1,174,458	+				-2.5
1,174,458	+				+0.6
1,174,458	+				-0.5
1,174,458	+				-0.5
1,174,458	+				-0.9
1,174,458	+				+1.0
1,174,458	+				-0.9
1,174,458	+				+0.5
1,174,458	+				+0.6
1,174,458	+				+0.3
1,174,458	+				+2.3
1,174,458	+				-0.7
1,174,459	-				-0.0
1,174,459	-				-0.0
1,174,459	-				-0.7
1,174,459	-				-0.9
1,174,459	-				-0.3
1,174,459	-				-0.7
1,174,459	-				-0.1
1,174,459	-				-0.4
1,174,459	-				-0.3
1,174,459	-				+0.5
1,174,459	-				+1.3
1,174,459	-				+0.9
1,174,459	-				+1.0
1,174,845	+		Psyr_1039	0.35	+0.3
1,175,203	-		Psyr_1039	0.72	-0.1
1,175,478	-				-0.5
1,175,487	+				+0.7
1,175,488	-				-0.4
1,175,488	-				-1.7
1,175,488	-				-0.2
1,175,488	-				-0.6
1,175,488	-				+2.3
1,175,721	+		Psyr_1040	0.49	-0.5
1,175,721	+		Psyr_1040	0.49	-1.4
1,175,721	+		Psyr_1040	0.49	+0.1
1,175,722	-		Psyr_1040	0.49	-0.0
1,175,722	-		Psyr_1040	0.49	-0.2
1,175,724	+		Psyr_1040	0.50	-0.0
1,175,724	+		Psyr_1040	0.50	+0.8
1,175,724	+		Psyr_1040	0.50	+0.5
1,175,725	-		Psyr_1040	0.50	+0.9
1,175,819	-		Psyr_1040	0.68	+0.1
1,175,842	+		Psyr_1040	0.73	-0.2
1,175,931	+				-2.6
1,175,931	+				+0.4
1,175,931	+				+0.3
1,175,931	+				-1.5
1,176,125	-				+0.5
1,176,189	+				+0.2
1,176,189	+				+0.7
1,176,189	+				+0.3
1,176,189	+				-0.2
1,176,189	+				+0.9
1,176,190	-				+1.8
1,176,190	-				-1.1
1,176,210	+				+0.4
1,176,210	+				+0.3
1,176,211	-				+0.2
1,176,211	-				+0.1
1,176,361	-		Psyr_1041	0.20	-0.5
1,176,361	-		Psyr_1041	0.20	+0.3