Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1008

Experiment: KB with Huperzine A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Huperzine A 10 mM
1,142,579	+		Psyr_1007	0.60	+0.2
1,142,727	+		Psyr_1007	0.67	-0.3
1,142,728	-		Psyr_1007	0.67	+0.2
1,142,728	-		Psyr_1007	0.67	+0.7
1,142,728	-		Psyr_1007	0.67	-0.4
1,142,728	-		Psyr_1007	0.67	+1.1
1,143,075	+		Psyr_1007	0.83	+0.1
1,143,075	+		Psyr_1007	0.83	-0.1
1,143,076	-		Psyr_1007	0.83	+0.3
1,143,076	-		Psyr_1007	0.83	+0.5
1,143,076	-		Psyr_1007	0.83	-0.7
1,143,076	-		Psyr_1007	0.83	-0.4
1,143,076	-		Psyr_1007	0.83	+0.1
1,143,323	+				+1.0
1,143,323	+				-0.2
1,143,461	+				-0.1
1,143,461	+				+1.8
1,143,461	+				+0.1
1,143,462	-				-0.8
1,143,462	-				-1.7
1,143,462	-				+1.1
1,143,462	-				+0.5
1,143,462	-				-0.1
1,143,462	-				+0.8
1,143,462	-				+1.1
1,143,525	+		Psyr_1008	0.11	+0.6
1,143,525	+		Psyr_1008	0.11	+0.5
1,143,667	+		Psyr_1008	0.74	-0.2
1,143,775	+				+0.3
1,143,799	-				-1.2
1,143,799	-				-1.0
1,143,855	+				+0.5
1,143,855	+				-0.3
1,143,855	+				-0.9
1,143,855	+				-0.1
1,143,856	-				-0.3
1,143,856	-				-0.4
1,143,856	-				+1.1
1,143,856	-				-0.4
1,143,856	-				-0.3
1,143,856	-				+0.2
1,143,858	-				-0.6
1,143,919	-		Psyr_1009	0.21	-0.0
1,143,979	+		Psyr_1009	0.33	+0.6
1,143,979	+		Psyr_1009	0.33	+1.2
1,144,029	+		Psyr_1009	0.43	-1.8
1,144,315	+				+0.5
1,144,316	-				-1.2
1,144,402	+				-0.6
1,144,403	-				-1.0
1,144,403	-				+0.2
1,144,589	+		Psyr_1010	0.31	-0.7
1,144,589	+		Psyr_1010	0.31	+0.6
1,144,589	+		Psyr_1010	0.31	+0.4
1,144,611	+		Psyr_1010	0.36	+2.3
1,144,612	-		Psyr_1010	0.36	-1.3
1,144,612	-		Psyr_1010	0.36	-0.4
1,144,612	-		Psyr_1010	0.36	-0.7
1,144,692	-		Psyr_1010	0.52	-0.2
1,144,692	-		Psyr_1010	0.52	-0.9
1,144,705	+		Psyr_1010	0.55	+0.6