Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0940

Experiment: KB with Huperzine A 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0938 and Psyr_0939 are separated by 121 nucleotidesPsyr_0939 and Psyr_0940 overlap by 79 nucleotidesPsyr_0940 and Psyr_0941 are separated by 127 nucleotides Psyr_0938: Psyr_0938 - hypothetical protein, at 1,074,450 to 1,075,661 _0938 Psyr_0939: Psyr_0939 - CDS, at 1,075,783 to 1,076,142 _0939 Psyr_0940: Psyr_0940 - CDS, at 1,076,064 to 1,076,363 _0940 Psyr_0941: Psyr_0941 - Conserved hypothetical protein 92, at 1,076,491 to 1,077,591 _0941 Position (kb) 1076 1077Strain fitness (log2 ratio) -2 -1 0 1 2at 1075.166 kb on - strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.176 kb on + strand, within Psyr_0938at 1075.256 kb on + strand, within Psyr_0938at 1075.296 kb on - strand, within Psyr_0938at 1075.296 kb on - strand, within Psyr_0938at 1075.299 kb on - strand, within Psyr_0938at 1075.384 kb on - strand, within Psyr_0938at 1075.384 kb on - strand, within Psyr_0938at 1075.389 kb on + strand, within Psyr_0938at 1075.390 kb on - strand, within Psyr_0938at 1075.398 kb on - strand, within Psyr_0938at 1075.398 kb on - strand, within Psyr_0938at 1075.511 kb on + strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.512 kb on - strand, within Psyr_0938at 1075.557 kb on + strandat 1075.559 kb on + strandat 1075.560 kb on - strandat 1075.560 kb on - strandat 1075.622 kb on + strandat 1075.626 kb on + strandat 1075.637 kb on + strandat 1075.637 kb on + strandat 1075.755 kb on + strandat 1075.755 kb on + strandat 1075.756 kb on - strandat 1075.756 kb on - strandat 1075.799 kb on - strandat 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.874 kb on + strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.875 kb on - strand, within Psyr_0939at 1075.901 kb on - strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.919 kb on + strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.920 kb on - strand, within Psyr_0939at 1075.948 kb on + strand, within Psyr_0939at 1075.982 kb on + strand, within Psyr_0939at 1075.982 kb on + strand, within Psyr_0939at 1075.983 kb on - strand, within Psyr_0939at 1075.983 kb on - strand, within Psyr_0939at 1076.031 kb on + strand, within Psyr_0939at 1076.031 kb on + strand, within Psyr_0939at 1076.088 kb on + strandat 1076.088 kb on + strandat 1076.199 kb on + strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.200 kb on - strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.223 kb on + strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.224 kb on - strand, within Psyr_0940at 1076.267 kb on + strand, within Psyr_0940at 1076.267 kb on + strand, within Psyr_0940at 1076.268 kb on - strand, within Psyr_0940at 1076.268 kb on - strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.297 kb on + strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.298 kb on - strand, within Psyr_0940at 1076.301 kb on + strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.302 kb on - strand, within Psyr_0940at 1076.336 kb on + strandat 1076.336 kb on + strandat 1076.336 kb on + strandat 1076.337 kb on - strandat 1076.337 kb on - strandat 1076.408 kb on + strandat 1076.409 kb on - strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.537 kb on + strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.538 kb on - strandat 1076.612 kb on + strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.613 kb on - strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.738 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.975 kb on + strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941at 1076.976 kb on - strand, within Psyr_0941

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
remove
1,075,166 - Psyr_0938 0.59 -0.3
1,075,176 + Psyr_0938 0.60 -0.1
1,075,176 + Psyr_0938 0.60 -2.0
1,075,176 + Psyr_0938 0.60 -1.2
1,075,176 + Psyr_0938 0.60 +0.8
1,075,176 + Psyr_0938 0.60 -1.2
1,075,256 + Psyr_0938 0.67 +0.9
1,075,296 - Psyr_0938 0.70 -1.4
1,075,296 - Psyr_0938 0.70 -1.4
1,075,299 - Psyr_0938 0.70 -0.9
1,075,384 - Psyr_0938 0.77 -0.7
1,075,384 - Psyr_0938 0.77 +0.2
1,075,389 + Psyr_0938 0.77 -1.5
1,075,390 - Psyr_0938 0.78 -0.4
1,075,398 - Psyr_0938 0.78 -0.9
1,075,398 - Psyr_0938 0.78 -0.3
1,075,511 + Psyr_0938 0.88 -0.0
1,075,512 - Psyr_0938 0.88 -0.6
1,075,512 - Psyr_0938 0.88 -2.0
1,075,512 - Psyr_0938 0.88 +0.2
1,075,512 - Psyr_0938 0.88 +0.2
1,075,557 + -0.3
1,075,559 + -0.2
1,075,560 - -0.5
1,075,560 - +0.4
1,075,622 + +0.9
1,075,626 + -0.5
1,075,637 + +0.1
1,075,637 + -0.5
1,075,755 + -0.5
1,075,755 + -0.2
1,075,756 - +1.8
1,075,756 - -1.6
1,075,799 - +1.8
1,075,874 + Psyr_0939 0.25 +0.4
1,075,874 + Psyr_0939 0.25 +0.9
1,075,874 + Psyr_0939 0.25 +2.2
1,075,874 + Psyr_0939 0.25 -0.2
1,075,875 - Psyr_0939 0.26 -1.1
1,075,875 - Psyr_0939 0.26 -1.6
1,075,875 - Psyr_0939 0.26 -1.0
1,075,901 - Psyr_0939 0.33 +0.4
1,075,919 + Psyr_0939 0.38 -1.1
1,075,919 + Psyr_0939 0.38 +0.0
1,075,919 + Psyr_0939 0.38 +0.9
1,075,919 + Psyr_0939 0.38 +0.9
1,075,919 + Psyr_0939 0.38 +0.6
1,075,919 + Psyr_0939 0.38 +0.9
1,075,919 + Psyr_0939 0.38 +0.0
1,075,920 - Psyr_0939 0.38 -1.2
1,075,920 - Psyr_0939 0.38 -0.2
1,075,948 + Psyr_0939 0.46 +0.4
1,075,982 + Psyr_0939 0.55 +0.0
1,075,982 + Psyr_0939 0.55 -0.0
1,075,983 - Psyr_0939 0.56 -0.2
1,075,983 - Psyr_0939 0.56 +0.9
1,076,031 + Psyr_0939 0.69 -0.4
1,076,031 + Psyr_0939 0.69 -1.0
1,076,088 + -0.9
1,076,088 + +0.9
1,076,199 + Psyr_0940 0.45 -0.0
1,076,200 - Psyr_0940 0.45 -0.7
1,076,200 - Psyr_0940 0.45 -0.7
1,076,200 - Psyr_0940 0.45 -1.7
1,076,200 - Psyr_0940 0.45 -0.2
1,076,200 - Psyr_0940 0.45 -0.3
1,076,200 - Psyr_0940 0.45 -1.8
1,076,223 + Psyr_0940 0.53 -0.5
1,076,223 + Psyr_0940 0.53 -1.6
1,076,223 + Psyr_0940 0.53 +0.4
1,076,223 + Psyr_0940 0.53 +1.4
1,076,224 - Psyr_0940 0.53 -1.6
1,076,224 - Psyr_0940 0.53 -0.6
1,076,224 - Psyr_0940 0.53 +1.9
1,076,224 - Psyr_0940 0.53 -2.3
1,076,224 - Psyr_0940 0.53 -0.4
1,076,267 + Psyr_0940 0.68 -0.4
1,076,267 + Psyr_0940 0.68 -2.0
1,076,268 - Psyr_0940 0.68 -2.6
1,076,268 - Psyr_0940 0.68 -0.8
1,076,297 + Psyr_0940 0.78 -1.2
1,076,297 + Psyr_0940 0.78 +1.2
1,076,297 + Psyr_0940 0.78 +0.1
1,076,297 + Psyr_0940 0.78 +0.6
1,076,297 + Psyr_0940 0.78 -1.4
1,076,297 + Psyr_0940 0.78 -0.2
1,076,297 + Psyr_0940 0.78 -0.4
1,076,297 + Psyr_0940 0.78 +0.6
1,076,298 - Psyr_0940 0.78 -2.4
1,076,298 - Psyr_0940 0.78 -1.5
1,076,298 - Psyr_0940 0.78 -0.2
1,076,298 - Psyr_0940 0.78 -1.8
1,076,298 - Psyr_0940 0.78 -0.4
1,076,301 + Psyr_0940 0.79 +0.1
1,076,302 - Psyr_0940 0.79 -0.8
1,076,302 - Psyr_0940 0.79 -0.8
1,076,302 - Psyr_0940 0.79 -0.1
1,076,336 + +0.2
1,076,336 + -0.3
1,076,336 + +0.6
1,076,337 - +0.9
1,076,337 - -1.0
1,076,408 + -1.6
1,076,409 - +0.8
1,076,537 + -1.4
1,076,537 + -1.6
1,076,537 + -2.6
1,076,537 + +0.0
1,076,537 + -1.4
1,076,537 + -1.0
1,076,537 + -1.6
1,076,538 - -1.2
1,076,538 - -1.5
1,076,538 - +0.3
1,076,538 - +1.2
1,076,538 - -0.1
1,076,612 + Psyr_0941 0.11 -0.2
1,076,613 - Psyr_0941 0.11 -2.2
1,076,613 - Psyr_0941 0.11 +0.5
1,076,613 - Psyr_0941 0.11 +1.4
1,076,738 + Psyr_0941 0.22 -1.1
1,076,738 + Psyr_0941 0.22 +0.2
1,076,975 + Psyr_0941 0.44 +0.2
1,076,975 + Psyr_0941 0.44 +0.4
1,076,975 + Psyr_0941 0.44 -1.0
1,076,975 + Psyr_0941 0.44 +0.9
1,076,975 + Psyr_0941 0.44 -0.6
1,076,975 + Psyr_0941 0.44 -2.2
1,076,975 + Psyr_0941 0.44 -0.4
1,076,975 + Psyr_0941 0.44 +1.1
1,076,975 + Psyr_0941 0.44 +0.9
1,076,975 + Psyr_0941 0.44 -0.8
1,076,975 + Psyr_0941 0.44 -0.8
1,076,975 + Psyr_0941 0.44 -1.9
1,076,975 + Psyr_0941 0.44 -0.5
1,076,975 + Psyr_0941 0.44 -0.7
1,076,976 - Psyr_0941 0.44 -1.8
1,076,976 - Psyr_0941 0.44 -1.1
1,076,976 - Psyr_0941 0.44 -2.2
1,076,976 - Psyr_0941 0.44 +0.2
1,076,976 - Psyr_0941 0.44 +0.2
1,076,976 - Psyr_0941 0.44 -0.3
1,076,976 - Psyr_0941 0.44 -0.6
1,076,976 - Psyr_0941 0.44 -0.4
1,076,976 - Psyr_0941 0.44 -1.0
1,076,976 - Psyr_0941 0.44 -0.4

Or see this region's nucleotide sequence