Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0880

Experiment: KB with Huperzine A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Huperzine A 10 mM
1,001,859	+		Psyr_0878	0.83	+0.0
1,001,860	-		Psyr_0878	0.84	+1.2
1,002,004	+				+1.0
1,002,005	-				+0.3
1,002,005	-				+0.5
1,002,068	-				-1.5
1,002,068	-				-0.2
1,002,068	-				-0.5
1,002,103	-				-0.6
1,002,171	+		Psyr_0879	0.11	+0.9
1,002,171	+		Psyr_0879	0.11	-0.4
1,002,171	+		Psyr_0879	0.11	-0.5
1,002,171	+		Psyr_0879	0.11	-2.5
1,002,172	-		Psyr_0879	0.11	+0.3
1,002,172	-		Psyr_0879	0.11	+1.9
1,002,172	-		Psyr_0879	0.11	-2.7
1,002,172	-		Psyr_0879	0.11	-0.6
1,002,172	-		Psyr_0879	0.11	+0.6
1,002,210	+		Psyr_0879	0.19	-1.4
1,002,211	-		Psyr_0879	0.19	-1.3
1,002,211	-		Psyr_0879	0.19	-0.8
1,002,237	-		Psyr_0879	0.24	+0.0
1,002,322	+		Psyr_0879	0.42	-2.2
1,002,350	+		Psyr_0879	0.48	+1.1
1,002,350	+		Psyr_0879	0.48	-1.0
1,002,350	+		Psyr_0879	0.48	+0.4
1,002,350	+		Psyr_0879	0.48	+0.5
1,002,350	+		Psyr_0879	0.48	-0.3
1,002,350	+		Psyr_0879	0.48	+0.9
1,002,350	+		Psyr_0879	0.48	+0.1
1,002,350	+		Psyr_0879	0.48	-0.1
1,002,351	-		Psyr_0879	0.48	+0.2
1,002,351	-		Psyr_0879	0.48	+0.9
1,002,351	-		Psyr_0879	0.48	-1.2
1,002,351	-		Psyr_0879	0.48	+0.7
1,002,351	-		Psyr_0879	0.48	-1.8
1,002,351	-		Psyr_0879	0.48	-1.0
1,002,410	+		Psyr_0879	0.60	-0.6
1,002,452	+		Psyr_0879	0.69	-0.2
1,002,453	-		Psyr_0879	0.69	+1.4
1,002,453	-		Psyr_0879	0.69	-1.5
1,002,468	+		Psyr_0879	0.72	+0.1
1,002,495	+		Psyr_0879	0.78	-0.8
1,002,505	+		Psyr_0879	0.80	+0.7
1,002,506	-		Psyr_0879	0.80	+0.8
1,002,506	-		Psyr_0879	0.80	-2.4
1,002,506	-		Psyr_0879	0.80	-0.1
1,002,506	-		Psyr_0879	0.80	-0.6
1,002,527	+		Psyr_0879	0.84	-0.8
1,002,527	+		Psyr_0879	0.84	-1.4
1,002,528	-		Psyr_0879	0.84	+0.5
1,002,568	+				-2.1
1,002,568	+				+0.0
1,002,569	-				+0.0
1,002,569	-				-0.3
1,002,569	-				-0.8
1,002,569	-				+0.6
1,002,569	-				+0.6
1,002,572	+				-1.3
1,002,572	+				-0.9
1,002,572	+				+0.9
1,002,572	+				+0.2
1,002,572	+				-0.6
1,002,572	+				-0.4
1,002,572	+				+1.7
1,002,573	-				-0.3
1,002,573	-				-0.0
1,002,573	-				+1.0
1,002,611	+				+0.5
1,002,648	+				+0.6
1,002,649	-				-0.3
1,002,736	-				-0.7
1,002,736	-				-2.0
1,002,834	+				+0.1
1,002,834	+				-0.2
1,002,986	+		Psyr_0880	0.11	-0.2
1,002,986	+		Psyr_0880	0.11	-0.1
1,002,986	+		Psyr_0880	0.11	+1.1
1,002,986	+		Psyr_0880	0.11	-0.4
1,002,986	+		Psyr_0880	0.11	+1.4
1,002,986	+		Psyr_0880	0.11	+0.5
1,002,986	+		Psyr_0880	0.11	+0.9
1,002,986	+		Psyr_0880	0.11	+0.3
1,002,986	+		Psyr_0880	0.11	+0.4
1,002,986	+		Psyr_0880	0.11	+0.4
1,002,986	+		Psyr_0880	0.11	-0.4
1,002,986	+		Psyr_0880	0.11	+0.0
1,002,986	+		Psyr_0880	0.11	-1.0
1,002,987	-		Psyr_0880	0.11	-1.5
1,002,987	-		Psyr_0880	0.11	+0.0
1,002,987	-		Psyr_0880	0.11	+0.1
1,002,987	-		Psyr_0880	0.11	+0.4
1,002,987	-		Psyr_0880	0.11	+0.7
1,002,987	-		Psyr_0880	0.11	-0.4
1,002,987	-		Psyr_0880	0.11	-0.1
1,002,987	-		Psyr_0880	0.11	-0.0
1,002,988	+		Psyr_0880	0.11	+1.7
1,003,185	-		Psyr_0880	0.27	-0.9
1,003,235	+		Psyr_0880	0.31	+0.3
1,003,236	-		Psyr_0880	0.32	+0.5
1,003,236	-		Psyr_0880	0.32	+0.4
1,003,236	-		Psyr_0880	0.32	-1.2
1,003,236	-		Psyr_0880	0.32	-0.4
1,003,236	-		Psyr_0880	0.32	+1.4
1,003,292	+		Psyr_0880	0.36	+0.1
1,003,292	+		Psyr_0880	0.36	+0.1
1,003,292	+		Psyr_0880	0.36	+0.9
1,003,293	-		Psyr_0880	0.36	+0.4
1,003,293	-		Psyr_0880	0.36	+0.1
1,003,293	-		Psyr_0880	0.36	+0.6
1,003,333	+		Psyr_0880	0.40	+0.7
1,003,333	+		Psyr_0880	0.40	+0.5
1,003,333	+		Psyr_0880	0.40	-0.6
1,003,333	+		Psyr_0880	0.40	+0.5
1,003,333	+		Psyr_0880	0.40	+0.4
1,003,333	+		Psyr_0880	0.40	-2.0
1,003,334	-		Psyr_0880	0.40	+0.6
1,003,334	-		Psyr_0880	0.40	+1.0
1,003,334	-		Psyr_0880	0.40	+0.6
1,003,334	-		Psyr_0880	0.40	-0.3
1,003,334	-		Psyr_0880	0.40	+0.8
1,003,334	-		Psyr_0880	0.40	-0.0
1,003,334	-		Psyr_0880	0.40	-1.0
1,003,334	-		Psyr_0880	0.40	+0.1
1,003,390	+		Psyr_0880	0.44	-0.4
1,003,390	+		Psyr_0880	0.44	+1.1
1,003,390	+		Psyr_0880	0.44	+0.2
1,003,390	+		Psyr_0880	0.44	-0.8
1,003,390	+		Psyr_0880	0.44	+0.8
1,003,391	-		Psyr_0880	0.44	-0.6
1,003,565	+		Psyr_0880	0.59	+1.6
1,003,590	+		Psyr_0880	0.61	+0.4
1,003,591	-		Psyr_0880	0.61	-0.5
1,003,697	+		Psyr_0880	0.70	-1.0
1,003,698	-		Psyr_0880	0.70	-0.1
1,003,698	-		Psyr_0880	0.70	+1.0
1,003,772	+		Psyr_0880	0.76	-1.7
1,003,905	+		Psyr_0880	0.87	+0.9
1,003,905	+		Psyr_0880	0.87	-1.1
1,003,905	+		Psyr_0880	0.87	-0.3
1,003,906	-		Psyr_0880	0.87	-0.6
1,003,906	-		Psyr_0880	0.87	+1.1
1,003,906	-				-0.6
1,003,978	+				+0.6
1,003,978	+				-1.6
1,003,979	-				-0.4
1,004,086	+				-0.0
1,004,087	-				-0.4
1,004,106	-				+1.1
1,004,106	-				-1.1
1,004,106	-				-1.6
1,004,109	+				+0.3
1,004,109	+				+1.0
1,004,109	+				+1.4
1,004,110	-				-0.5
1,004,110	-				-0.6
1,004,110	-				-2.6
1,004,110	-				+0.0
1,004,110	-				-0.2
1,004,110	-				+0.3
1,004,110	-				-0.4
1,004,110	-				-0.2
1,004,110	-				+0.8
1,004,113	+				-1.7
1,004,113	+				-1.0
1,004,113	+				-0.7
1,004,113	+				-0.6
1,004,113	+				-1.0
1,004,113	+				+1.4
1,004,114	-				+0.1
1,004,114	-				-0.8
1,004,114	-				+1.0
1,004,114	-				+0.0
1,004,145	+				-0.2
1,004,145	+				-1.1
1,004,145	+				+1.0
1,004,145	+				-0.5
1,004,145	+				-0.5
1,004,146	-				+0.2
1,004,146	-				-1.0
1,004,265	+				+0.2
1,004,266	-				+0.5
1,004,266	-				+0.7
1,004,320	+				-0.2
1,004,320	+				-0.0
1,004,320	+				+0.5
1,004,321	-				+0.4
1,004,321	-				-2.2
1,004,321	-				+0.6
1,004,321	-				-0.3
1,004,455	-		Psyr_0881	0.30	+1.1
1,004,531	-		Psyr_0881	0.57	-0.9
1,004,531	-		Psyr_0881	0.57	-0.2
1,004,574	+		Psyr_0881	0.73	-0.8
1,004,574	+		Psyr_0881	0.73	-0.5
1,004,574	+		Psyr_0881	0.73	-0.3
1,004,574	+		Psyr_0881	0.73	-0.3
1,004,574	+		Psyr_0881	0.73	-0.2
1,004,574	+		Psyr_0881	0.73	+0.4
1,004,574	+		Psyr_0881	0.73	-0.0
1,004,575	-		Psyr_0881	0.73	-0.1
1,004,575	-		Psyr_0881	0.73	-0.2
1,004,575	-		Psyr_0881	0.73	-0.8
1,004,575	-		Psyr_0881	0.73	+1.4
1,004,575	-		Psyr_0881	0.73	-0.2
1,004,575	-		Psyr_0881	0.73	+1.2
1,004,575	-		Psyr_0881	0.73	+0.8
1,004,575	-		Psyr_0881	0.73	+1.7
1,004,576	+		Psyr_0881	0.73	-0.2
1,004,576	+				+1.0
1,004,577	-		Psyr_0881	0.74	-0.5
1,004,612	-		Psyr_0881	0.86	-1.7
1,004,630	+				-0.3
1,004,630	+				-0.1
1,004,631	-				+0.7
1,004,631	-				-1.4
1,004,631	-				+0.4
1,004,636	+				+1.2
1,004,636	+				+0.9
1,004,637	-				-1.6
1,004,637	-				-1.0
1,004,637	-				+0.0
1,004,637	-				+1.1
1,004,661	-				-1.8
1,004,733	+				-0.6
1,004,734	-				-0.6
1,004,737	+				-2.0
1,004,743	-				+0.5
1,004,830	-		Psyr_0882	0.31	-1.5
1,004,830	-		Psyr_0882	0.31	-0.1
1,004,863	+		Psyr_0882	0.44	+0.0
1,004,863	+		Psyr_0882	0.44	-0.7
1,004,863	+				+1.9
1,004,863	+		Psyr_0882	0.44	+1.0
1,004,864	-		Psyr_0882	0.44	-0.1
1,004,864	-		Psyr_0882	0.44	-1.2
1,004,906	-		Psyr_0882	0.60	-1.0
1,004,906	-		Psyr_0882	0.60	-0.4
1,004,906	-		Psyr_0882	0.60	-0.2
1,004,914	+		Psyr_0882	0.63	-0.7
1,004,915	-		Psyr_0882	0.63	-2.9
1,004,915	-		Psyr_0882	0.63	+1.7
1,004,943	-		Psyr_0882	0.74	-0.1
1,004,946	+		Psyr_0882	0.75	-0.5
1,004,964	+		Psyr_0882	0.82	+0.4
1,004,964	+		Psyr_0882	0.82	+1.1
1,004,964	+		Psyr_0882	0.82	+0.0
1,004,964	+		Psyr_0882	0.82	-0.0
1,004,964	+		Psyr_0882	0.82	+0.6
1,004,964	+		Psyr_0882	0.82	-1.8
1,004,964	+		Psyr_0882	0.82	+0.5
1,004,965	-		Psyr_0882	0.82	+2.0
1,004,965	-		Psyr_0882	0.82	-1.0
1,004,965	-		Psyr_0882	0.82	-0.5
1,004,965	-		Psyr_0882	0.82	+0.0
1,004,990	+				+1.0
1,004,991	-				+1.0