Experiment: KB with Huperzine A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0636 and Psyr_0637 overlap by 4 nucleotides Psyr_0637 and Psyr_0638 are separated by 14 nucleotides Psyr_0638 and Psyr_0639 are separated by 84 nucleotides Psyr_0639 and Psyr_0640 are separated by 18 nucleotides
Psyr_0636: Psyr_0636 - LrgA, at 726,272 to 726,634
_0636
Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347
_0637
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603
_0639
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Position (kb) 727
728 Strain fitness (log2 ratio) -2
-1
0
1 at 726.383 kb on - strand, within Psyr_0636 at 726.383 kb on - strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.498 kb on - strand, within Psyr_0636 at 726.498 kb on - strand, within Psyr_0636 at 726.498 kb on - strand at 726.498 kb on - strand, within Psyr_0636 at 726.710 kb on - strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.817 kb on + strand, within Psyr_0637 at 726.895 kb on + strand, within Psyr_0637 at 726.896 kb on - strand, within Psyr_0637 at 726.903 kb on + strand, within Psyr_0637 at 726.903 kb on + strand, within Psyr_0637 at 727.131 kb on - strand, within Psyr_0637 at 727.345 kb on + strand at 727.346 kb on - strand at 727.362 kb on - strand at 727.496 kb on + strand, within Psyr_0638 at 727.497 kb on - strand, within Psyr_0638 at 727.809 kb on + strand, within Psyr_0638 at 727.834 kb on - strand, within Psyr_0638 at 727.982 kb on + strand at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.285 kb on - strand, within Psyr_0639 at 728.591 kb on + strand at 728.636 kb on - strand at 728.789 kb on - strand, within Psyr_0640 at 728.789 kb on - strand, within Psyr_0640 at 728.845 kb on + strand, within Psyr_0640 at 728.872 kb on + strand, within Psyr_0640 at 728.873 kb on - strand, within Psyr_0640 at 728.875 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.885 kb on - strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM remove 726,383 - Psyr_0636 0.31 +0.2 726,383 - Psyr_0636 0.31 -0.6 726,389 + Psyr_0636 0.32 -0.3 726,389 + Psyr_0636 0.32 +0.1 726,389 + Psyr_0636 0.32 +0.9 726,389 + Psyr_0636 0.32 -0.4 726,389 + Psyr_0636 0.32 +0.2 726,389 + Psyr_0636 0.32 -0.8 726,390 - Psyr_0636 0.33 +1.5 726,390 - Psyr_0636 0.33 -0.6 726,498 - Psyr_0636 0.62 -0.1 726,498 - Psyr_0636 0.62 -0.3 726,498 - -1.2 726,498 - Psyr_0636 0.62 +0.2 726,710 - Psyr_0637 0.11 +0.9 726,817 + Psyr_0637 0.26 +0.3 726,817 + Psyr_0637 0.26 +0.6 726,817 + Psyr_0637 0.26 -0.6 726,817 + Psyr_0637 0.26 -0.7 726,817 + Psyr_0637 0.26 -0.2 726,895 + Psyr_0637 0.37 +0.9 726,896 - Psyr_0637 0.37 +1.2 726,903 + Psyr_0637 0.38 +0.4 726,903 + Psyr_0637 0.38 -0.2 727,131 - Psyr_0637 0.70 +0.2 727,345 + -0.2 727,346 - -0.5 727,362 - -2.1 727,496 + Psyr_0638 0.23 -0.1 727,497 - Psyr_0638 0.23 -1.5 727,809 + Psyr_0638 0.76 -1.0 727,834 - Psyr_0638 0.80 -0.5 727,982 + +0.9 728,180 + Psyr_0639 0.25 -0.9 728,180 + Psyr_0639 0.25 +1.4 728,180 + Psyr_0639 0.25 +0.4 728,181 - Psyr_0639 0.25 -1.2 728,181 - Psyr_0639 0.25 -0.1 728,181 - Psyr_0639 0.25 -2.3 728,206 + Psyr_0639 0.30 +0.1 728,206 + Psyr_0639 0.30 -0.2 728,206 - Psyr_0639 0.30 -1.2 728,207 - Psyr_0639 0.30 +0.3 728,207 - Psyr_0639 0.30 +0.5 728,284 + Psyr_0639 0.44 +0.5 728,284 + Psyr_0639 0.44 +0.6 728,285 - Psyr_0639 0.44 -0.1 728,591 + -0.4 728,636 - -0.5 728,789 - Psyr_0640 0.26 -0.8 728,789 - Psyr_0640 0.26 +0.4 728,845 + Psyr_0640 0.35 -0.0 728,872 + Psyr_0640 0.39 +0.8 728,873 - Psyr_0640 0.39 +0.6 728,875 + Psyr_0640 0.40 -0.3 728,884 + Psyr_0640 0.41 +1.0 728,884 + Psyr_0640 0.41 -0.1 728,885 - Psyr_0640 0.41 -0.4 728,938 + Psyr_0640 0.49 -1.0 728,938 + Psyr_0640 0.49 +0.3 728,938 + Psyr_0640 0.49 -1.7 728,939 - Psyr_0640 0.50 +0.1 728,939 - Psyr_0640 0.50 -0.7 728,939 - Psyr_0640 0.50 +1.0
Or see this region's nucleotide sequence