Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0497

Experiment: KB with Huperzine A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0496 and Psyr_0497 are separated by 15 nucleotidesPsyr_0497 and Psyr_0498 are separated by 2 nucleotidesPsyr_0498 and Psyr_0499 are separated by 9 nucleotides Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307 _0496 Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087 _0497 Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884 _0498 Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498 _0499 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 538.376 kb on + strand, within Psyr_0496at 538.376 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.678 kb on - strand, within Psyr_0496at 538.684 kb on + strand, within Psyr_0496at 538.684 kb on + strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.792 kb on + strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 539.066 kb on + strand, within Psyr_0496at 539.066 kb on + strand, within Psyr_0496at 539.067 kb on - strand, within Psyr_0496at 539.067 kb on - strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.222 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.280 kb on + strandat 539.281 kb on - strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.590 kb on + strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.644 kb on + strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.834 kb on - strand, within Psyr_0497at 539.834 kb on - strand, within Psyr_0497at 540.228 kb on + strand, within Psyr_0498at 540.228 kb on + strand, within Psyr_0498at 540.229 kb on - strand, within Psyr_0498at 540.528 kb on + strand, within Psyr_0498at 540.528 kb on + strand, within Psyr_0498at 540.870 kb on + strandat 540.870 kb on + strandat 540.870 kb on + strandat 540.870 kb on + strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.873 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.882 kb on + strandat 540.882 kb on + strandat 540.882 kb on + strandat 540.883 kb on - strandat 540.883 kb on - strandat 540.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Huperzine A 10 mM
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538,376 + Psyr_0496 0.24 -1.2
538,376 + Psyr_0496 0.24 +0.2
538,675 + Psyr_0496 0.49 +0.5
538,675 + Psyr_0496 0.49 -0.3
538,675 + Psyr_0496 0.49 +0.2
538,675 + Psyr_0496 0.49 +0.2
538,676 - Psyr_0496 0.49 +0.1
538,676 - Psyr_0496 0.49 -0.0
538,676 - Psyr_0496 0.49 +0.2
538,676 - Psyr_0496 0.49 -0.8
538,677 + Psyr_0496 0.49 -0.9
538,677 + Psyr_0496 0.49 -0.2
538,678 - Psyr_0496 0.49 +1.9
538,684 + Psyr_0496 0.49 +0.1
538,684 + Psyr_0496 0.49 +0.5
538,685 - Psyr_0496 0.49 +0.5
538,685 - Psyr_0496 0.49 +0.7
538,685 - Psyr_0496 0.49 -1.0
538,685 - Psyr_0496 0.49 +0.3
538,685 - Psyr_0496 0.49 +0.1
538,742 + Psyr_0496 0.54 +0.9
538,742 + Psyr_0496 0.54 -1.1
538,742 + Psyr_0496 0.54 +0.1
538,742 + Psyr_0496 0.54 -0.2
538,742 + Psyr_0496 0.54 +0.1
538,742 + Psyr_0496 0.54 +1.2
538,743 - Psyr_0496 0.54 +1.0
538,743 - Psyr_0496 0.54 -0.9
538,743 - Psyr_0496 0.54 -0.6
538,743 - Psyr_0496 0.54 -0.2
538,743 - Psyr_0496 0.54 +0.5
538,743 - Psyr_0496 0.54 +0.3
538,743 - Psyr_0496 0.54 -0.3
538,792 + Psyr_0496 0.58 -0.6
538,793 - Psyr_0496 0.58 -1.8
538,793 - Psyr_0496 0.58 +0.6
538,796 + Psyr_0496 0.58 -0.6
538,796 + Psyr_0496 0.58 -0.1
538,796 + Psyr_0496 0.58 -0.2
538,796 + Psyr_0496 0.58 -0.3
538,796 + Psyr_0496 0.58 +1.5
538,797 - Psyr_0496 0.59 -0.9
538,797 - Psyr_0496 0.59 -0.4
538,797 - Psyr_0496 0.59 +0.5
538,797 - Psyr_0496 0.59 +0.3
538,797 - Psyr_0496 0.59 +0.6
538,797 - Psyr_0496 0.59 +0.2
538,969 + Psyr_0496 0.73 -1.7
538,969 + Psyr_0496 0.73 -1.0
538,969 + Psyr_0496 0.73 +0.5
538,969 + Psyr_0496 0.73 -1.4
538,970 - Psyr_0496 0.73 -0.4
538,970 - Psyr_0496 0.73 -0.1
538,970 - Psyr_0496 0.73 +2.0
538,970 - Psyr_0496 0.73 +0.6
538,970 - Psyr_0496 0.73 -0.5
538,970 - Psyr_0496 0.73 -1.7
538,970 - Psyr_0496 0.73 +1.5
538,970 - Psyr_0496 0.73 -0.7
538,971 + Psyr_0496 0.73 +0.3
538,971 + Psyr_0496 0.73 +0.6
538,971 + Psyr_0496 0.73 +0.4
538,971 + Psyr_0496 0.73 +0.2
538,971 + Psyr_0496 0.73 -0.7
538,971 + Psyr_0496 0.73 -1.0
538,971 + Psyr_0496 0.73 +0.1
538,971 + Psyr_0496 0.73 +0.9
538,971 + Psyr_0496 0.73 -0.5
538,972 - Psyr_0496 0.73 +0.8
538,972 - Psyr_0496 0.73 +0.3
538,972 - Psyr_0496 0.73 -0.1
538,972 - Psyr_0496 0.73 +3.5
539,066 + Psyr_0496 0.80 -0.6
539,066 + Psyr_0496 0.80 +0.2
539,067 - Psyr_0496 0.80 -2.2
539,067 - Psyr_0496 0.80 +1.3
539,068 + Psyr_0496 0.81 -1.5
539,068 + Psyr_0496 0.81 +0.6
539,068 + Psyr_0496 0.81 +0.4
539,069 - Psyr_0496 0.81 -1.2
539,069 - Psyr_0496 0.81 +0.5
539,069 - Psyr_0496 0.81 -0.3
539,069 - Psyr_0496 0.81 -1.7
539,069 - Psyr_0496 0.81 -0.3
539,161 + Psyr_0496 0.88 +0.1
539,161 + Psyr_0496 0.88 -0.6
539,161 + Psyr_0496 0.88 -0.0
539,161 + Psyr_0496 0.88 -0.1
539,161 + Psyr_0496 0.88 -0.3
539,161 + Psyr_0496 0.88 -0.4
539,162 - Psyr_0496 0.88 -0.2
539,162 - Psyr_0496 0.88 -0.3
539,162 - Psyr_0496 0.88 +1.0
539,162 - Psyr_0496 0.88 -0.5
539,162 - Psyr_0496 0.88 +0.3
539,162 - Psyr_0496 0.88 -0.7
539,162 - Psyr_0496 0.88 +0.0
539,222 + +0.7
539,254 + +0.8
539,254 + -0.7
539,254 + +1.9
539,254 + -1.5
539,254 + +0.6
539,255 - -0.5
539,255 - -2.1
539,255 - +0.2
539,255 - -0.2
539,280 + -0.0
539,281 - -0.1
539,333 + -0.5
539,333 + +1.2
539,333 + +0.6
539,333 + +0.6
539,334 - -1.3
539,334 - +0.1
539,334 - +0.7
539,334 - +0.6
539,590 + Psyr_0497 0.35 +0.0
539,590 + Psyr_0497 0.35 -0.1
539,590 + Psyr_0497 0.35 -0.5
539,591 - Psyr_0497 0.35 -1.1
539,591 - Psyr_0497 0.35 -0.3
539,644 + Psyr_0497 0.42 +0.5
539,645 - Psyr_0497 0.42 -0.5
539,645 - Psyr_0497 0.42 -0.3
539,668 + Psyr_0497 0.45 -1.7
539,668 + Psyr_0497 0.45 -0.4
539,669 - Psyr_0497 0.45 -0.2
539,669 - Psyr_0497 0.45 -0.4
539,834 - Psyr_0497 0.67 -0.7
539,834 - Psyr_0497 0.67 +0.0
540,228 + Psyr_0498 0.17 +0.2
540,228 + Psyr_0498 0.17 +0.5
540,229 - Psyr_0498 0.17 -0.0
540,528 + Psyr_0498 0.55 -0.4
540,528 + Psyr_0498 0.55 +0.1
540,870 + +0.3
540,870 + +0.1
540,870 + +0.2
540,870 + -1.9
540,871 - +0.8
540,871 - -1.5
540,871 - -0.1
540,871 - -1.0
540,871 - +0.3
540,871 - +0.7
540,871 - -0.0
540,871 - -0.4
540,871 - -0.9
540,871 - +0.1
540,873 + +0.3
540,880 + +0.4
540,880 + -0.9
540,880 + -0.6
540,880 + +1.5
540,880 + -0.4
540,880 + +0.2
540,880 + -0.3
540,880 + +0.1
540,880 + -0.5
540,880 + -1.9
540,881 - +0.8
540,881 - -0.8
540,881 - +0.5
540,881 - -1.5
540,881 - +1.5
540,881 - +1.3
540,881 - +0.5
540,881 - +0.6
540,881 - -0.3
540,882 + +0.6
540,882 + -0.6
540,882 + -0.6
540,883 - +0.3
540,883 - -1.0
540,903 + +0.5

Or see this region's nucleotide sequence