Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27455

Experiment: p-Coumaric (C) and Ammonium chloride (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS27450 and PFLU_RS27455 overlap by 26 nucleotidesPFLU_RS27455 and PFLU_RS27460 overlap by 4 nucleotidesPFLU_RS27460 and PFLU_RS27465 overlap by 4 nucleotides PFLU_RS27450: PFLU_RS27450 - LPS-assembly protein LptD, at 6,104,705 to 6,107,515 _RS27450 PFLU_RS27455: PFLU_RS27455 - molecular chaperone SurA, at 6,107,490 to 6,108,830 _RS27455 PFLU_RS27460: PFLU_RS27460 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 6,108,827 to 6,109,816 _RS27460 PFLU_RS27465: PFLU_RS27465 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 6,109,813 to 6,110,625 _RS27465 Position (kb) 6107 6108 6109Strain fitness (log2 ratio) -2 -1 0 1 2at 6107.454 kb on + strandat 6107.454 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.810 kb on + strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.811 kb on - strandat 6109.812 kb on + strandat 6109.812 kb on + strandat 6109.812 kb on + strandat 6109.812 kb on + strandat 6109.812 kb on + strandat 6109.812 kb on + strandat 6109.812 kb on + strandat 6109.813 kb on - strandat 6109.813 kb on - strandat 6109.813 kb on - strandat 6109.813 kb on - strandat 6109.813 kb on - strandat 6109.813 kb on - strandat 6109.813 kb on - strandat 6109.825 kb on + strandat 6109.825 kb on + strandat 6109.825 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C) and Ammonium chloride (N); with MOPS
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6,107,454 + -1.2
6,107,454 + -1.8
6,109,810 + -0.9
6,109,810 + +0.7
6,109,810 + +1.4
6,109,810 + -0.7
6,109,810 + +0.7
6,109,810 + +0.3
6,109,810 + -1.7
6,109,810 + -0.0
6,109,811 - +0.4
6,109,811 - -1.5
6,109,811 - -0.6
6,109,811 - +0.1
6,109,811 - -0.3
6,109,811 - +2.0
6,109,811 - +0.9
6,109,811 - +0.5
6,109,811 - +0.3
6,109,811 - +1.2
6,109,811 - +0.2
6,109,811 - +0.6
6,109,811 - +0.4
6,109,811 - +0.9
6,109,811 - -0.2
6,109,811 - +0.6
6,109,812 + -0.1
6,109,812 + +0.7
6,109,812 + +0.1
6,109,812 + +0.3
6,109,812 + +0.5
6,109,812 + -0.1
6,109,812 + -2.4
6,109,813 - -0.5
6,109,813 - -1.5
6,109,813 - -1.4
6,109,813 - -0.5
6,109,813 - +1.1
6,109,813 - -0.3
6,109,813 - -1.9
6,109,825 + +0.3
6,109,825 + +0.7
6,109,825 + +0.5

Or see this region's nucleotide sequence