Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005488

Experiment: Growth in presence of pinene

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005487 and ABIE53_005488 overlap by 8 nucleotidesABIE53_005488 and ABIE53_005489 overlap by 4 nucleotides ABIE53_005487: ABIE53_005487 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 1,764,197 to 1,765,210 _005487 ABIE53_005488: ABIE53_005488 - formylmethanofuran dehydrogenase subunit A, at 1,765,203 to 1,766,915 _005488 ABIE53_005489: ABIE53_005489 - formylmethanofuran dehydrogenase subunit B, at 1,766,912 to 1,768,360 _005489 Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1764.249 kb on + strandat 1764.249 kb on + strandat 1764.250 kb on - strandat 1764.270 kb on + strandat 1764.271 kb on - strandat 1764.487 kb on - strand, within ABIE53_005487at 1764.706 kb on - strand, within ABIE53_005487at 1764.826 kb on - strand, within ABIE53_005487at 1765.054 kb on + strand, within ABIE53_005487at 1765.330 kb on + strandat 1765.331 kb on - strandat 1765.450 kb on + strand, within ABIE53_005488at 1765.450 kb on + strand, within ABIE53_005488at 1765.450 kb on + strand, within ABIE53_005488at 1765.450 kb on + strand, within ABIE53_005488at 1765.451 kb on - strand, within ABIE53_005488at 1765.451 kb on - strand, within ABIE53_005488at 1765.594 kb on + strand, within ABIE53_005488at 1765.714 kb on + strand, within ABIE53_005488at 1765.825 kb on + strand, within ABIE53_005488at 1765.825 kb on + strand, within ABIE53_005488at 1765.825 kb on + strand, within ABIE53_005488at 1765.825 kb on + strand, within ABIE53_005488at 1765.826 kb on - strand, within ABIE53_005488at 1765.826 kb on - strand, within ABIE53_005488at 1765.826 kb on - strand, within ABIE53_005488at 1765.826 kb on - strand, within ABIE53_005488at 1765.826 kb on - strand, within ABIE53_005488at 1765.826 kb on - strand, within ABIE53_005488at 1766.064 kb on + strand, within ABIE53_005488at 1766.065 kb on - strand, within ABIE53_005488at 1766.065 kb on - strand, within ABIE53_005488at 1766.065 kb on - strand, within ABIE53_005488at 1766.065 kb on - strand, within ABIE53_005488at 1766.071 kb on + strand, within ABIE53_005488at 1766.071 kb on + strand, within ABIE53_005488at 1766.072 kb on - strand, within ABIE53_005488at 1766.072 kb on - strand, within ABIE53_005488at 1766.072 kb on - strand, within ABIE53_005488at 1766.072 kb on - strand, within ABIE53_005488at 1766.072 kb on - strand, within ABIE53_005488at 1766.072 kb on - strand, within ABIE53_005488at 1766.075 kb on + strand, within ABIE53_005488at 1766.075 kb on + strand, within ABIE53_005488at 1766.075 kb on + strand, within ABIE53_005488at 1766.075 kb on + strand, within ABIE53_005488at 1766.076 kb on - strand, within ABIE53_005488at 1766.076 kb on - strand, within ABIE53_005488at 1766.076 kb on - strand, within ABIE53_005488at 1766.076 kb on - strand, within ABIE53_005488at 1766.076 kb on - strand, within ABIE53_005488at 1766.087 kb on + strand, within ABIE53_005488at 1766.258 kb on - strand, within ABIE53_005488at 1766.258 kb on - strand, within ABIE53_005488at 1766.377 kb on + strand, within ABIE53_005488at 1766.452 kb on + strand, within ABIE53_005488at 1766.452 kb on + strand, within ABIE53_005488at 1766.452 kb on + strand, within ABIE53_005488at 1766.453 kb on - strand, within ABIE53_005488at 1766.453 kb on - strand, within ABIE53_005488at 1766.453 kb on - strand, within ABIE53_005488at 1766.545 kb on + strand, within ABIE53_005488at 1766.561 kb on - strand, within ABIE53_005488at 1766.650 kb on + strand, within ABIE53_005488at 1766.651 kb on - strand, within ABIE53_005488at 1766.651 kb on - strand, within ABIE53_005488at 1766.651 kb on - strand, within ABIE53_005488at 1767.279 kb on + strand, within ABIE53_005489at 1767.280 kb on - strand, within ABIE53_005489at 1767.293 kb on - strand, within ABIE53_005489at 1767.501 kb on + strand, within ABIE53_005489at 1767.501 kb on + strand, within ABIE53_005489at 1767.502 kb on - strand, within ABIE53_005489at 1767.502 kb on - strand, within ABIE53_005489at 1767.516 kb on + strand, within ABIE53_005489at 1767.516 kb on + strand, within ABIE53_005489at 1767.543 kb on - strand, within ABIE53_005489at 1767.747 kb on - strand, within ABIE53_005489at 1767.747 kb on - strand, within ABIE53_005489at 1767.747 kb on - strand, within ABIE53_005489

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth in presence of pinene
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1,764,249 + -1.0
1,764,249 + -1.4
1,764,250 - -0.6
1,764,270 + +0.4
1,764,271 - +1.3
1,764,487 - ABIE53_005487 0.29 -1.2
1,764,706 - ABIE53_005487 0.50 +0.6
1,764,826 - ABIE53_005487 0.62 +0.6
1,765,054 + ABIE53_005487 0.85 -0.2
1,765,330 + +1.8
1,765,331 - -0.0
1,765,450 + ABIE53_005488 0.14 +2.0
1,765,450 + ABIE53_005488 0.14 +1.6
1,765,450 + ABIE53_005488 0.14 -0.5
1,765,450 + ABIE53_005488 0.14 +0.4
1,765,451 - ABIE53_005488 0.14 +1.6
1,765,451 - ABIE53_005488 0.14 +0.0
1,765,594 + ABIE53_005488 0.23 +2.6
1,765,714 + ABIE53_005488 0.30 +0.3
1,765,825 + ABIE53_005488 0.36 +0.2
1,765,825 + ABIE53_005488 0.36 +1.6
1,765,825 + ABIE53_005488 0.36 -0.0
1,765,825 + ABIE53_005488 0.36 -0.0
1,765,826 - ABIE53_005488 0.36 +0.6
1,765,826 - ABIE53_005488 0.36 -0.4
1,765,826 - ABIE53_005488 0.36 +1.4
1,765,826 - ABIE53_005488 0.36 +0.2
1,765,826 - ABIE53_005488 0.36 +0.6
1,765,826 - ABIE53_005488 0.36 -0.0
1,766,064 + ABIE53_005488 0.50 +1.6
1,766,065 - ABIE53_005488 0.50 +1.6
1,766,065 - ABIE53_005488 0.50 -0.1
1,766,065 - ABIE53_005488 0.50 -0.6
1,766,065 - ABIE53_005488 0.50 -3.1
1,766,071 + ABIE53_005488 0.51 +0.6
1,766,071 + ABIE53_005488 0.51 -2.4
1,766,072 - ABIE53_005488 0.51 -1.4
1,766,072 - ABIE53_005488 0.51 +0.1
1,766,072 - ABIE53_005488 0.51 -0.7
1,766,072 - ABIE53_005488 0.51 +2.2
1,766,072 - ABIE53_005488 0.51 -0.1
1,766,072 - ABIE53_005488 0.51 -0.4
1,766,075 + ABIE53_005488 0.51 -0.4
1,766,075 + ABIE53_005488 0.51 +0.0
1,766,075 + ABIE53_005488 0.51 +2.2
1,766,075 + ABIE53_005488 0.51 -0.0
1,766,076 - ABIE53_005488 0.51 -2.0
1,766,076 - ABIE53_005488 0.51 -0.9
1,766,076 - ABIE53_005488 0.51 -2.1
1,766,076 - ABIE53_005488 0.51 -0.0
1,766,076 - ABIE53_005488 0.51 -0.0
1,766,087 + ABIE53_005488 0.52 -0.7
1,766,258 - ABIE53_005488 0.62 +0.8
1,766,258 - ABIE53_005488 0.62 -2.6
1,766,377 + ABIE53_005488 0.69 -0.0
1,766,452 + ABIE53_005488 0.73 -0.7
1,766,452 + ABIE53_005488 0.73 -2.7
1,766,452 + ABIE53_005488 0.73 +0.5
1,766,453 - ABIE53_005488 0.73 -1.9
1,766,453 - ABIE53_005488 0.73 +1.4
1,766,453 - ABIE53_005488 0.73 +2.8
1,766,545 + ABIE53_005488 0.78 -1.4
1,766,561 - ABIE53_005488 0.79 +0.2
1,766,650 + ABIE53_005488 0.84 +0.8
1,766,651 - ABIE53_005488 0.85 -0.0
1,766,651 - ABIE53_005488 0.85 +1.2
1,766,651 - ABIE53_005488 0.85 -0.0
1,767,279 + ABIE53_005489 0.25 +1.3
1,767,280 - ABIE53_005489 0.25 +0.6
1,767,293 - ABIE53_005489 0.26 +0.0
1,767,501 + ABIE53_005489 0.41 -0.4
1,767,501 + ABIE53_005489 0.41 -0.5
1,767,502 - ABIE53_005489 0.41 -0.4
1,767,502 - ABIE53_005489 0.41 -1.6
1,767,516 + ABIE53_005489 0.42 +1.0
1,767,516 + ABIE53_005489 0.42 -1.7
1,767,543 - ABIE53_005489 0.44 -1.1
1,767,747 - ABIE53_005489 0.58 +0.4
1,767,747 - ABIE53_005489 0.58 -1.1
1,767,747 - ABIE53_005489 0.58 -0.6

Or see this region's nucleotide sequence