Experiment: Growth in presence of pinene
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004632 and ABIE53_004633 are separated by 110 nucleotides ABIE53_004633 and ABIE53_004634 are separated by 49 nucleotides
ABIE53_004632: ABIE53_004632 - CRP/FNR family cyclic AMP-dependent transcriptional regulator, at 815,073 to 815,786
_004632
ABIE53_004633: ABIE53_004633 - putative membrane protein YGL010W, at 815,897 to 816,436
_004633
ABIE53_004634: ABIE53_004634 - chloramphenicol-sensitive protein RarD, at 816,486 to 817,376
_004634
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 814.926 kb on + strand at 814.926 kb on + strand at 814.926 kb on + strand at 814.927 kb on - strand at 814.927 kb on - strand at 814.927 kb on - strand at 814.927 kb on - strand at 814.929 kb on + strand at 814.930 kb on - strand at 814.930 kb on - strand at 814.936 kb on + strand at 814.945 kb on - strand at 814.987 kb on + strand at 814.987 kb on + strand at 814.987 kb on + strand at 814.988 kb on - strand at 815.048 kb on + strand at 815.049 kb on - strand at 815.075 kb on - strand at 815.134 kb on - strand at 815.134 kb on - strand at 815.134 kb on - strand at 815.262 kb on - strand, within ABIE53_004632 at 815.278 kb on + strand, within ABIE53_004632 at 815.279 kb on - strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.347 kb on - strand, within ABIE53_004632 at 815.347 kb on - strand, within ABIE53_004632 at 815.404 kb on + strand, within ABIE53_004632 at 815.479 kb on + strand, within ABIE53_004632 at 815.480 kb on - strand, within ABIE53_004632 at 815.480 kb on - strand, within ABIE53_004632 at 815.607 kb on + strand, within ABIE53_004632 at 815.607 kb on + strand, within ABIE53_004632 at 815.608 kb on - strand, within ABIE53_004632 at 815.608 kb on - strand, within ABIE53_004632 at 815.617 kb on + strand, within ABIE53_004632 at 815.617 kb on + strand, within ABIE53_004632 at 815.618 kb on - strand, within ABIE53_004632 at 815.618 kb on - strand, within ABIE53_004632 at 815.618 kb on - strand, within ABIE53_004632 at 815.792 kb on - strand at 815.920 kb on + strand at 815.920 kb on + strand at 815.920 kb on + strand at 815.928 kb on - strand at 815.928 kb on - strand at 815.936 kb on + strand at 815.936 kb on + strand at 815.936 kb on + strand at 815.936 kb on + strand at 815.937 kb on - strand at 815.937 kb on - strand at 815.937 kb on - strand at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.093 kb on - strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.245 kb on - strand, within ABIE53_004633 at 816.245 kb on - strand, within ABIE53_004633 at 816.260 kb on + strand, within ABIE53_004633 at 816.284 kb on - strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.379 kb on - strand, within ABIE53_004633 at 816.379 kb on - strand, within ABIE53_004633 at 816.379 kb on - strand, within ABIE53_004633 at 816.479 kb on + strand at 816.479 kb on + strand at 816.480 kb on - strand at 816.480 kb on - strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.544 kb on - strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.631 kb on + strand, within ABIE53_004634 at 816.632 kb on - strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.683 kb on - strand, within ABIE53_004634 at 816.683 kb on - strand, within ABIE53_004634 at 816.683 kb on - strand, within ABIE53_004634 at 816.758 kb on + strand, within ABIE53_004634 at 816.758 kb on + strand, within ABIE53_004634 at 816.758 kb on + strand, within ABIE53_004634 at 816.759 kb on - strand, within ABIE53_004634 at 816.874 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.006 kb on + strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.007 kb on - strand, within ABIE53_004634 at 817.048 kb on + strand, within ABIE53_004634 at 817.049 kb on - strand, within ABIE53_004634 at 817.059 kb on + strand, within ABIE53_004634 at 817.059 kb on + strand, within ABIE53_004634 at 817.059 kb on + strand, within ABIE53_004634 at 817.060 kb on - strand, within ABIE53_004634 at 817.060 kb on - strand, within ABIE53_004634 at 817.175 kb on - strand, within ABIE53_004634 at 817.250 kb on + strand, within ABIE53_004634 at 817.250 kb on + strand, within ABIE53_004634 at 817.251 kb on - strand, within ABIE53_004634 at 817.277 kb on + strand, within ABIE53_004634 at 817.300 kb on + strand at 817.301 kb on - strand at 817.341 kb on + strand at 817.366 kb on + strand at 817.366 kb on + strand at 817.412 kb on + strand at 817.413 kb on - strand at 817.413 kb on - strand at 817.413 kb on - strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.414 kb on + strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand at 817.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in presence of pinene remove 814,926 + -1.4 814,926 + +2.3 814,926 + -0.4 814,927 - -1.0 814,927 - -2.8 814,927 - -0.2 814,927 - -1.9 814,929 + -0.2 814,930 - +0.3 814,930 - +0.0 814,936 + +0.6 814,945 - -1.2 814,987 + -3.0 814,987 + +1.3 814,987 + -1.1 814,988 - -0.7 815,048 + -0.8 815,049 - -1.5 815,075 - +0.7 815,134 - +0.9 815,134 - -0.7 815,134 - -1.2 815,262 - ABIE53_004632 0.26 +2.2 815,278 + ABIE53_004632 0.29 -0.2 815,279 - ABIE53_004632 0.29 +2.0 815,346 + ABIE53_004632 0.38 +0.7 815,346 + ABIE53_004632 0.38 +0.8 815,346 + ABIE53_004632 0.38 -0.2 815,346 + ABIE53_004632 0.38 -1.5 815,347 - ABIE53_004632 0.38 -0.3 815,347 - ABIE53_004632 0.38 +2.1 815,404 + ABIE53_004632 0.46 +1.6 815,479 + ABIE53_004632 0.57 +0.6 815,480 - ABIE53_004632 0.57 +1.3 815,480 - ABIE53_004632 0.57 -0.6 815,607 + ABIE53_004632 0.75 -1.3 815,607 + ABIE53_004632 0.75 +0.7 815,608 - ABIE53_004632 0.75 -1.1 815,608 - ABIE53_004632 0.75 -2.0 815,617 + ABIE53_004632 0.76 -0.5 815,617 + ABIE53_004632 0.76 +1.6 815,618 - ABIE53_004632 0.76 -0.5 815,618 - ABIE53_004632 0.76 -2.2 815,618 - ABIE53_004632 0.76 -0.1 815,792 - +0.5 815,920 + +0.1 815,920 + -1.7 815,920 + +1.0 815,928 - -2.0 815,928 - -1.0 815,936 + -0.0 815,936 + -1.4 815,936 + -1.5 815,936 + +0.1 815,937 - +1.0 815,937 - -1.5 815,937 - -0.5 816,092 + ABIE53_004633 0.36 -1.0 816,092 + ABIE53_004633 0.36 +0.2 816,092 + ABIE53_004633 0.36 +0.4 816,092 + ABIE53_004633 0.36 -0.5 816,092 + ABIE53_004633 0.36 -1.0 816,093 - ABIE53_004633 0.36 +0.2 816,095 + ABIE53_004633 0.37 -1.2 816,095 + ABIE53_004633 0.37 -1.0 816,095 + ABIE53_004633 0.37 -1.0 816,095 + ABIE53_004633 0.37 +1.3 816,095 + ABIE53_004633 0.37 -0.4 816,095 + ABIE53_004633 0.37 +0.7 816,095 + ABIE53_004633 0.37 -1.7 816,096 - ABIE53_004633 0.37 -1.8 816,096 - ABIE53_004633 0.37 -1.3 816,096 - ABIE53_004633 0.37 +0.8 816,096 - ABIE53_004633 0.37 -1.3 816,096 - ABIE53_004633 0.37 -0.7 816,096 - ABIE53_004633 0.37 -0.5 816,096 - ABIE53_004633 0.37 -0.5 816,245 - ABIE53_004633 0.64 -0.7 816,245 - ABIE53_004633 0.64 +0.3 816,260 + ABIE53_004633 0.67 +1.7 816,284 - ABIE53_004633 0.72 -1.6 816,294 + ABIE53_004633 0.74 -0.8 816,294 + ABIE53_004633 0.74 +0.4 816,294 + ABIE53_004633 0.74 +1.2 816,294 + ABIE53_004633 0.74 -0.1 816,294 + ABIE53_004633 0.74 -1.5 816,295 - ABIE53_004633 0.74 +0.3 816,295 - ABIE53_004633 0.74 -0.2 816,295 - ABIE53_004633 0.74 -0.2 816,295 - ABIE53_004633 0.74 +0.3 816,295 - ABIE53_004633 0.74 -2.3 816,295 - ABIE53_004633 0.74 +0.1 816,379 - ABIE53_004633 0.89 +1.4 816,379 - ABIE53_004633 0.89 -1.5 816,379 - ABIE53_004633 0.89 +0.8 816,479 + +0.6 816,479 + -0.7 816,480 - -0.6 816,480 - +1.5 816,512 + +1.6 816,512 + -2.1 816,512 + +0.9 816,512 + -0.5 816,512 + -0.2 816,512 + -0.4 816,512 + +0.3 816,513 - -1.3 816,513 - +0.0 816,513 - +1.4 816,513 - +0.7 816,513 - +1.8 816,513 - -1.2 816,513 - -0.5 816,513 - -0.2 816,513 - -0.1 816,544 - +0.5 816,553 + -0.4 816,553 + +2.0 816,553 + -1.2 816,553 + -1.2 816,553 + +0.1 816,553 + +0.1 816,553 + -0.6 816,553 + +0.6 816,553 + +0.5 816,553 + +2.8 816,553 + -0.7 816,553 + +0.8 816,553 + +0.8 816,553 + +0.4 816,553 + +0.4 816,553 + -1.6 816,553 + +0.5 816,554 - -0.2 816,554 - +0.5 816,554 - +0.0 816,554 - -1.1 816,554 - -0.3 816,554 - -1.2 816,554 - -2.1 816,554 - +0.9 816,554 - +1.8 816,554 - -0.6 816,554 - -0.5 816,554 - -0.7 816,554 - +0.6 816,554 - -0.2 816,554 - +2.4 816,554 - -1.6 816,631 + ABIE53_004634 0.16 -2.9 816,632 - ABIE53_004634 0.16 -0.4 816,682 + ABIE53_004634 0.22 -0.9 816,682 + ABIE53_004634 0.22 -2.6 816,682 + ABIE53_004634 0.22 -2.2 816,682 + ABIE53_004634 0.22 +0.3 816,683 - ABIE53_004634 0.22 -0.7 816,683 - ABIE53_004634 0.22 -1.6 816,683 - ABIE53_004634 0.22 +1.8 816,758 + ABIE53_004634 0.31 -0.0 816,758 + ABIE53_004634 0.31 -0.1 816,758 + ABIE53_004634 0.31 -0.2 816,759 - ABIE53_004634 0.31 -1.0 816,874 + ABIE53_004634 0.44 -1.0 817,006 + ABIE53_004634 0.58 -0.6 817,006 + ABIE53_004634 0.58 -0.3 817,006 + ABIE53_004634 0.58 +2.3 817,006 + ABIE53_004634 0.58 -0.3 817,006 + ABIE53_004634 0.58 -3.2 817,006 + ABIE53_004634 0.58 -0.6 817,006 + ABIE53_004634 0.58 -0.3 817,007 - ABIE53_004634 0.58 -0.0 817,007 - ABIE53_004634 0.58 +0.7 817,007 - ABIE53_004634 0.58 -2.3 817,007 - ABIE53_004634 0.58 -0.8 817,007 - ABIE53_004634 0.58 +1.8 817,048 + ABIE53_004634 0.63 +0.6 817,049 - ABIE53_004634 0.63 +0.2 817,059 + ABIE53_004634 0.64 -0.7 817,059 + ABIE53_004634 0.64 -0.2 817,059 + ABIE53_004634 0.64 -1.4 817,060 - ABIE53_004634 0.64 -0.5 817,060 - ABIE53_004634 0.64 -1.1 817,175 - ABIE53_004634 0.77 +1.6 817,250 + ABIE53_004634 0.86 -1.6 817,250 + ABIE53_004634 0.86 +0.0 817,251 - ABIE53_004634 0.86 -0.8 817,277 + ABIE53_004634 0.89 +0.8 817,300 + -0.7 817,301 - -0.1 817,341 + +0.3 817,366 + -1.6 817,366 + +0.4 817,412 + -0.8 817,413 - -0.6 817,413 - -0.9 817,413 - -1.2 817,414 + -0.9 817,414 + -0.2 817,414 + +1.0 817,414 + -1.5 817,414 + -0.0 817,414 + -1.3 817,414 + -2.4 817,414 + -0.2 817,414 + +0.5 817,414 + +0.8 817,415 - +0.8 817,415 - -0.0 817,415 - -1.1 817,415 - +1.5 817,415 - -2.2 817,415 - -2.2 817,415 - -0.5 817,415 - -1.9 817,415 - -0.3
Or see this region's nucleotide sequence