Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30525

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
1,826,305	+		PFLU_RS30520	0.13	-0.9
1,826,308	+		PFLU_RS30520	0.13	-2.3
1,826,331	+		PFLU_RS30520	0.15	-2.7
1,826,401	+		PFLU_RS30520	0.22	-2.0
1,826,427	+		PFLU_RS30520	0.24	-1.1
1,826,450	+		PFLU_RS30520	0.26	-2.1
1,826,450	+		PFLU_RS30520	0.26	-2.1
1,826,451	-		PFLU_RS30520	0.26	-0.5
1,826,451	-		PFLU_RS30520	0.26	-1.2
1,826,544	-		PFLU_RS30520	0.35	-1.8
1,826,550	-		PFLU_RS30520	0.35	-0.9
1,826,607	+		PFLU_RS30520	0.41	-2.0
1,826,614	-		PFLU_RS30520	0.41	-1.5
1,826,629	+		PFLU_RS30520	0.43	-1.7
1,826,629	+		PFLU_RS30520	0.43	-1.7
1,826,630	-		PFLU_RS30520	0.43	-2.2
1,826,630	-		PFLU_RS30520	0.43	-1.7
1,826,635	-		PFLU_RS30520	0.43	-0.3
1,826,731	+		PFLU_RS30520	0.52	-1.5
1,826,844	-		PFLU_RS30520	0.62	-0.6
1,826,852	+		PFLU_RS30520	0.63	-1.6
1,826,904	+		PFLU_RS30520	0.68	-2.3
1,826,927	-		PFLU_RS30520	0.70	-1.8
1,826,953	+		PFLU_RS30520	0.72	-1.1
1,826,954	-		PFLU_RS30520	0.73	-1.4
1,826,954	-		PFLU_RS30520	0.73	-0.8
1,826,954	-		PFLU_RS30520	0.73	+0.5
1,826,957	+		PFLU_RS30520	0.73	-3.0
1,826,958	-		PFLU_RS30520	0.73	-1.1
1,826,958	-		PFLU_RS30520	0.73	-1.0
1,826,984	-		PFLU_RS30520	0.75	-1.6
1,827,088	+		PFLU_RS30520	0.85	-2.5
1,827,088	+		PFLU_RS30520	0.85	-1.9
1,827,088	+		PFLU_RS30520	0.85	-1.4
1,827,089	-		PFLU_RS30520	0.85	-1.7
1,827,089	-		PFLU_RS30520	0.85	-2.6
1,827,153	+				-3.2
1,827,153	+				-2.4
1,827,153	+				-1.8
1,827,153	+				-2.9
1,827,153	+				-0.5
1,827,154	-				-3.0
1,827,154	-				-0.4
1,827,175	+				-0.1
1,827,175	+				-2.4
1,827,175	+				-1.5
1,827,175	+				-2.0
1,827,222	+				-1.2
1,827,222	+				-3.3
1,827,222	+				-2.2
1,827,223	-				-2.4
1,827,223	-				-2.7
1,827,252	-				-2.0
1,827,287	+				-0.8
1,827,287	+				-2.6
1,827,287	+				-2.6
1,827,287	+				-3.4
1,827,287	+				-2.0
1,827,287	+				-2.8
1,827,287	+				-0.9
1,827,287	+				-3.8
1,827,288	-				-4.0
1,827,288	-				-0.3
1,827,288	-				+0.7
1,827,288	-				-0.2
1,827,288	-				-1.7
1,827,288	-				-0.3
1,827,288	-				-1.2
1,827,288	-				-2.3
1,827,288	-				-1.7
1,827,288	-				-2.4
1,827,354	+		PFLU_RS30525	0.14	-1.6
1,827,354	+		PFLU_RS30525	0.14	-1.3
1,827,355	-		PFLU_RS30525	0.14	-2.1
1,827,355	-		PFLU_RS30525	0.14	-1.5
1,827,355	-		PFLU_RS30525	0.14	-1.4
1,827,378	+		PFLU_RS30525	0.17	-1.6
1,827,378	+		PFLU_RS30525	0.17	-1.7
1,827,379	-		PFLU_RS30525	0.17	-0.2
1,827,379	-		PFLU_RS30525	0.17	-2.1
1,827,379	-		PFLU_RS30525	0.17	-2.7
1,827,417	+		PFLU_RS30525	0.22	-1.1
1,827,417	+		PFLU_RS30525	0.22	-2.7
1,827,426	+		PFLU_RS30525	0.23	-3.3
1,827,432	-		PFLU_RS30525	0.24	-1.9
1,827,432	-		PFLU_RS30525	0.24	-2.8
1,827,449	+		PFLU_RS30525	0.26	-2.1
1,827,449	+		PFLU_RS30525	0.26	-3.0
1,827,533	+		PFLU_RS30525	0.37	-2.5
1,827,534	-		PFLU_RS30525	0.37	-0.7
1,827,534	-		PFLU_RS30525	0.37	-2.6
1,827,534	-		PFLU_RS30525	0.37	-0.1
1,827,543	+		PFLU_RS30525	0.39	-2.0
1,827,552	-		PFLU_RS30525	0.40	-2.6
1,827,558	+		PFLU_RS30525	0.41	-0.3
1,827,595	-		PFLU_RS30525	0.45	-0.5
1,827,599	+		PFLU_RS30525	0.46	-1.4
1,827,599	+		PFLU_RS30525	0.46	-2.1
1,827,599	+		PFLU_RS30525	0.46	+0.0
1,827,599	+		PFLU_RS30525	0.46	-2.1
1,827,600	-		PFLU_RS30525	0.46	-2.6
1,827,622	-		PFLU_RS30525	0.49	-2.0
1,827,622	-		PFLU_RS30525	0.49	-0.6
1,827,622	-		PFLU_RS30525	0.49	+0.9
1,827,622	-		PFLU_RS30525	0.49	-0.4
1,827,644	+		PFLU_RS30525	0.52	-2.3
1,827,644	+		PFLU_RS30525	0.52	-2.6
1,827,644	+		PFLU_RS30525	0.52	-1.7
1,827,645	-		PFLU_RS30525	0.52	-0.3
1,827,645	-		PFLU_RS30525	0.52	-2.3
1,827,645	-		PFLU_RS30525	0.52	-1.3
1,827,645	-		PFLU_RS30525	0.52	-1.9
1,827,648	+		PFLU_RS30525	0.52	-2.9
1,827,648	+		PFLU_RS30525	0.52	-1.8
1,827,648	+		PFLU_RS30525	0.52	-1.5
1,827,648	+		PFLU_RS30525	0.52	-1.5
1,827,648	+		PFLU_RS30525	0.52	-1.6
1,827,649	-		PFLU_RS30525	0.53	-0.9
1,827,649	-		PFLU_RS30525	0.53	-1.4
1,827,649	-		PFLU_RS30525	0.53	-4.3
1,827,649	-		PFLU_RS30525	0.53	-2.8
1,827,653	+		PFLU_RS30525	0.53	-2.0
1,827,654	-		PFLU_RS30525	0.53	-1.9
1,827,673	-		PFLU_RS30525	0.56	-2.8
1,827,673	-		PFLU_RS30525	0.56	-1.8
1,827,673	-		PFLU_RS30525	0.56	-1.9
1,827,673	-		PFLU_RS30525	0.56	-2.6
1,827,673	-		PFLU_RS30525	0.56	-2.1
1,827,773	+		PFLU_RS30525	0.69	+0.4
1,827,773	+		PFLU_RS30525	0.69	-0.7
1,827,773	+		PFLU_RS30525	0.69	-1.7
1,827,774	-		PFLU_RS30525	0.69	-0.4
1,827,774	-		PFLU_RS30525	0.69	-1.8
1,827,774	-		PFLU_RS30525	0.69	-0.1
1,827,774	-		PFLU_RS30525	0.69	-2.6
1,827,786	+		PFLU_RS30525	0.71	-1.4
1,827,786	+		PFLU_RS30525	0.71	-2.5
1,827,786	+		PFLU_RS30525	0.71	-3.5
1,827,787	-		PFLU_RS30525	0.71	-0.7
1,827,796	-		PFLU_RS30525	0.72	-2.6
1,827,837	+		PFLU_RS30525	0.77	-2.6
1,827,838	-		PFLU_RS30525	0.77	-2.3
1,827,852	-		PFLU_RS30525	0.79	-2.5
1,827,875	+		PFLU_RS30525	0.82	-2.8
1,827,876	-		PFLU_RS30525	0.82	-2.8
1,827,896	+		PFLU_RS30525	0.85	-0.5
1,827,920	+		PFLU_RS30525	0.88	-1.7
1,827,920	+		PFLU_RS30525	0.88	-1.4
1,827,920	+		PFLU_RS30525	0.88	-1.3
1,827,920	+		PFLU_RS30525	0.88	-1.3
1,827,921	-		PFLU_RS30525	0.88	-1.6
1,827,921	-		PFLU_RS30525	0.88	-1.2
1,827,925	+		PFLU_RS30525	0.89	-1.9
1,827,926	-		PFLU_RS30525	0.89	-2.6
1,827,926	-		PFLU_RS30525	0.89	+0.5
1,827,933	+				-2.6
1,827,934	-				-2.5
1,827,934	-				-2.0
1,827,937	+				-0.3
1,827,937	+				-1.8
1,827,937	+				-1.4
1,827,937	+				-1.4
1,827,937	+				-2.3
1,827,937	+				-1.5
1,827,938	-				-1.0
1,827,938	-				-1.5
1,827,938	-				-2.2
1,827,972	+				-3.1
1,827,980	+				-1.4
1,827,980	+				-2.8
1,827,981	-				-1.8
1,827,997	+				-1.1
1,827,998	-				-2.3
1,828,024	+				-2.3
1,828,028	-				-1.3
1,828,100	+		PFLU_RS30530	0.14	-1.2
1,828,100	+		PFLU_RS30530	0.14	-2.3
1,828,100	+		PFLU_RS30530	0.14	-2.8
1,828,101	-		PFLU_RS30530	0.14	-3.2
1,828,101	-		PFLU_RS30530	0.14	-1.1
1,828,101	-		PFLU_RS30530	0.14	-1.5
1,828,106	+		PFLU_RS30530	0.15	-1.4
1,828,106	+		PFLU_RS30530	0.15	-1.4
1,828,107	-		PFLU_RS30530	0.15	-1.7
1,828,107	-		PFLU_RS30530	0.15	-2.8
1,828,119	-		PFLU_RS30530	0.17	+0.2
1,828,155	-		PFLU_RS30530	0.23	-1.0
1,828,187	+		PFLU_RS30530	0.27	-2.4
1,828,188	-		PFLU_RS30530	0.27	-1.3
1,828,227	-		PFLU_RS30530	0.33	-1.7
1,828,230	+		PFLU_RS30530	0.34	-1.4
1,828,230	+		PFLU_RS30530	0.34	-2.7
1,828,230	+		PFLU_RS30530	0.34	-1.3
1,828,230	+		PFLU_RS30530	0.34	-1.8
1,828,230	+		PFLU_RS30530	0.34	-0.9
1,828,230	+		PFLU_RS30530	0.34	-2.1
1,828,230	+		PFLU_RS30530	0.34	-1.6
1,828,230	+		PFLU_RS30530	0.34	-1.6
1,828,231	-		PFLU_RS30530	0.34	-1.1
1,828,231	-		PFLU_RS30530	0.34	-1.9
1,828,231	-		PFLU_RS30530	0.34	-0.4
1,828,231	-		PFLU_RS30530	0.34	-0.5
1,828,231	-		PFLU_RS30530	0.34	-0.8
1,828,231	-		PFLU_RS30530	0.34	-0.4
1,828,231	-		PFLU_RS30530	0.34	-2.2
1,828,231	-		PFLU_RS30530	0.34	-1.7
1,828,231	-		PFLU_RS30530	0.34	-2.1
1,828,231	-		PFLU_RS30530	0.34	-3.1
1,828,231	-		PFLU_RS30530	0.34	-0.1
1,828,231	-		PFLU_RS30530	0.34	-1.0
1,828,238	-		PFLU_RS30530	0.35	-2.6
1,828,426	+		PFLU_RS30530	0.63	-0.3
1,828,440	-		PFLU_RS30530	0.65	-2.6
1,828,476	-		PFLU_RS30530	0.71	-1.6
1,828,499	+		PFLU_RS30530	0.74	-2.4
1,828,499	+		PFLU_RS30530	0.74	-1.3
1,828,559	+		PFLU_RS30530	0.83	-2.7
1,828,560	-		PFLU_RS30530	0.83	-2.3
1,828,604	-				-1.8
1,828,604	-				-2.8
1,828,613	+				-1.1
1,828,700	+				-1.4
1,828,714	+				-1.9
1,828,725	-				-0.8
1,828,725	-				+0.3
1,828,771	+				-1.1
1,828,911	-		PFLU_RS08180	0.23	+0.4
1,828,915	+		PFLU_RS08180	0.24	-0.6
1,828,935	+		PFLU_RS08180	0.26	-1.6
1,828,935	+		PFLU_RS08180	0.26	-2.2
1,828,958	+		PFLU_RS08180	0.28	-2.5
1,828,959	-		PFLU_RS08180	0.28	-1.3
1,828,959	-		PFLU_RS08180	0.28	-2.2
1,828,986	-		PFLU_RS08180	0.31	-0.6