Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS10435

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
2,298,314	-				-0.9
2,298,344	-				-0.2
2,298,344	-				+1.2
2,298,344	-				-0.2
2,298,346	-				-1.0
2,298,346	-				-1.3
2,298,346	-				+0.0
2,298,346	-				-0.5
2,298,414	+				-0.3
2,298,414	+				+0.6
2,298,414	+				+1.6
2,298,414	+				+0.1
2,298,414	+				-0.7
2,298,414	+				-0.7
2,298,415	-				+0.9
2,298,415	-				-0.5
2,298,415	-				+1.4
2,298,428	+				+0.6
2,298,428	+				+0.3
2,298,428	+				-0.5
2,298,429	-				-0.6
2,298,468	+				+0.6
2,298,468	+				+0.5
2,298,468	+				+0.8
2,298,468	+				-2.3
2,298,468	+				+0.4
2,298,468	+				+0.9
2,298,468	+				+0.3
2,298,469	-				+0.7
2,298,469	-				-0.8
2,298,469	-				+1.0
2,298,469	-				+1.1
2,298,576	+		PFLU_RS10425	0.34	-0.2
2,298,576	+		PFLU_RS10425	0.34	+0.3
2,298,576	+		PFLU_RS10425	0.34	-1.3
2,298,577	-		PFLU_RS10425	0.35	-1.0
2,298,577	-		PFLU_RS10425	0.35	-1.0
2,298,577	-		PFLU_RS10425	0.35	-0.7
2,298,577	-		PFLU_RS10425	0.35	+2.2
2,298,577	-		PFLU_RS10425	0.35	+1.1
2,298,577	-		PFLU_RS10425	0.35	-0.7
2,298,577	-		PFLU_RS10425	0.35	+1.6
2,298,579	+		PFLU_RS10425	0.35	+0.1
2,298,579	+		PFLU_RS10425	0.35	-1.0
2,298,579	+		PFLU_RS10425	0.35	+0.5
2,298,579	+		PFLU_RS10425	0.35	-1.7
2,298,580	-		PFLU_RS10425	0.36	-1.5
2,298,580	-		PFLU_RS10425	0.36	-0.8
2,298,580	-		PFLU_RS10425	0.36	-1.2
2,298,580	-		PFLU_RS10425	0.36	+1.6
2,298,580	-		PFLU_RS10425	0.36	-0.5
2,298,580	-		PFLU_RS10425	0.36	+0.3
2,298,580	-		PFLU_RS10425	0.36	-0.2
2,298,580	-		PFLU_RS10425	0.36	+0.2
2,298,580	-		PFLU_RS10425	0.36	-0.4
2,298,580	-		PFLU_RS10425	0.36	+0.3
2,298,580	-		PFLU_RS10425	0.36	-0.6
2,298,580	-		PFLU_RS10425	0.36	+0.1
2,298,580	-		PFLU_RS10425	0.36	+0.1
2,298,673	+		PFLU_RS10425	0.66	+0.6
2,298,673	+		PFLU_RS10425	0.66	+0.6
2,298,673	+		PFLU_RS10425	0.66	+0.5
2,298,673	+		PFLU_RS10425	0.66	-1.6
2,298,673	+		PFLU_RS10425	0.66	-1.1
2,298,673	+		PFLU_RS10425	0.66	-0.0
2,298,673	+		PFLU_RS10425	0.66	-2.0
2,298,674	-		PFLU_RS10425	0.67	+0.8
2,298,674	-		PFLU_RS10425	0.67	+2.1
2,298,674	-		PFLU_RS10425	0.67	+0.8
2,298,674	-		PFLU_RS10425	0.67	+0.8
2,298,674	-		PFLU_RS10425	0.67	+1.2
2,298,674	-		PFLU_RS10425	0.67	+0.2
2,298,674	-		PFLU_RS10425	0.67	-0.3
2,298,674	-		PFLU_RS10425	0.67	+0.5
2,298,674	-		PFLU_RS10425	0.67	-0.1
2,298,674	-		PFLU_RS10425	0.67	-0.2
2,298,674	-		PFLU_RS10425	0.67	+0.6
2,298,674	-		PFLU_RS10425	0.67	-0.3
2,298,674	-		PFLU_RS10425	0.67	+1.3
2,298,679	+		PFLU_RS10425	0.68	+0.4
2,298,679	+		PFLU_RS10425	0.68	-0.2
2,298,679	+		PFLU_RS10425	0.68	-0.8
2,298,680	-		PFLU_RS10425	0.69	-0.1
2,298,769	-				+0.3
2,298,772	+				-2.9
2,298,772	+				-1.6
2,298,773	-				-1.3
2,298,773	-				-1.1
2,298,773	-				-2.0
2,298,773	-				-1.0
2,298,773	-				-1.9
2,298,773	-				-1.5
2,298,773	-				-1.0
2,298,773	-				-1.9
2,298,773	-				-1.8
2,298,773	-				-1.7
2,298,773	-				-0.2
2,298,773	-				-2.0
2,298,773	-				+0.2
2,298,773	-				-2.4
2,298,773	-				-1.5
2,298,988	-		PFLU_RS10430	0.69	-1.1
2,298,988	-		PFLU_RS10430	0.69	+0.3
2,298,988	-		PFLU_RS10430	0.69	-0.4
2,298,988	-		PFLU_RS10430	0.69	-0.4
2,298,994	-		PFLU_RS10430	0.71	-2.8
2,298,994	-		PFLU_RS10430	0.71	-1.0
2,298,994	-		PFLU_RS10430	0.71	-1.9
2,298,994	-		PFLU_RS10430	0.71	-2.3
2,298,994	-		PFLU_RS10430	0.71	-1.8
2,298,994	-		PFLU_RS10430	0.71	-3.0
2,298,994	-		PFLU_RS10430	0.71	-2.2
2,299,113	+				+0.2
2,299,113	+				-0.7
2,299,113	+				-0.8
2,299,113	+				+0.7
2,299,113	+				-2.8
2,299,114	-				-1.3
2,299,114	-				+1.3
2,299,114	-				+0.3
2,299,114	-				+0.3
2,299,114	-				+0.2
2,299,114	-				-0.4
2,299,158	-		PFLU_RS10435	0.11	+0.2
2,299,158	-		PFLU_RS10435	0.11	+0.6
2,299,158	-		PFLU_RS10435	0.11	+0.0
2,299,197	-		PFLU_RS10435	0.17	+0.4
2,299,376	+		PFLU_RS10435	0.43	+0.4
2,299,376	+		PFLU_RS10435	0.43	-1.1
2,299,377	-		PFLU_RS10435	0.44	+0.7
2,299,377	-		PFLU_RS10435	0.44	+0.0
2,299,407	+		PFLU_RS10435	0.48	+0.9
2,299,407	+		PFLU_RS10435	0.48	-0.1
2,299,407	+		PFLU_RS10435	0.48	-0.2
2,299,407	+		PFLU_RS10435	0.48	-0.1
2,299,407	+		PFLU_RS10435	0.48	-0.9
2,299,407	+		PFLU_RS10435	0.48	-0.2
2,299,407	+		PFLU_RS10435	0.48	-0.8
2,299,407	+		PFLU_RS10435	0.48	-1.5
2,299,407	+		PFLU_RS10435	0.48	-1.2
2,299,407	+		PFLU_RS10435	0.48	-1.7
2,299,407	+		PFLU_RS10435	0.48	-0.1
2,299,407	+		PFLU_RS10435	0.48	+1.1
2,299,408	-		PFLU_RS10435	0.48	+0.1
2,299,408	-		PFLU_RS10435	0.48	+0.3
2,299,408	-		PFLU_RS10435	0.48	+2.9
2,299,408	-		PFLU_RS10435	0.48	+0.6
2,299,408	-		PFLU_RS10435	0.48	-0.3
2,299,408	-		PFLU_RS10435	0.48	-0.5
2,299,408	-		PFLU_RS10435	0.48	+1.2
2,299,408	-		PFLU_RS10435	0.48	-0.3
2,299,408	-		PFLU_RS10435	0.48	+0.9
2,299,408	-		PFLU_RS10435	0.48	-0.5
2,299,408	-		PFLU_RS10435	0.48	-0.0
2,299,408	-		PFLU_RS10435	0.48	+0.9
2,299,408	-		PFLU_RS10435	0.48	-1.0
2,299,409	+		PFLU_RS10435	0.48	+1.0
2,299,409	+		PFLU_RS10435	0.48	+0.6
2,299,409	+		PFLU_RS10435	0.48	+1.0
2,299,409	+		PFLU_RS10435	0.48	-1.6
2,299,409	+		PFLU_RS10435	0.48	+0.8
2,299,409	+		PFLU_RS10435	0.48	+0.4
2,299,409	+		PFLU_RS10435	0.48	+0.3
2,299,409	+		PFLU_RS10435	0.48	+0.6
2,299,409	+		PFLU_RS10435	0.48	+0.7
2,299,410	-		PFLU_RS10435	0.49	-0.1
2,299,410	-		PFLU_RS10435	0.49	+0.5
2,299,410	-		PFLU_RS10435	0.49	-0.4
2,299,410	-		PFLU_RS10435	0.49	+0.6
2,299,410	-		PFLU_RS10435	0.49	+0.7
2,299,410	-		PFLU_RS10435	0.49	-1.4
2,299,410	-		PFLU_RS10435	0.49	+2.2
2,299,410	-		PFLU_RS10435	0.49	+0.9
2,299,410	-		PFLU_RS10435	0.49	+0.8
2,299,410	-		PFLU_RS10435	0.49	+0.8
2,299,410	-		PFLU_RS10435	0.49	+0.6
2,299,410	-		PFLU_RS10435	0.49	+1.3
2,299,410	-		PFLU_RS10435	0.49	-0.1
2,299,453	+		PFLU_RS10435	0.55	-1.2
2,299,453	+		PFLU_RS10435	0.55	+0.5
2,299,454	-		PFLU_RS10435	0.55	+0.8
2,299,454	-		PFLU_RS10435	0.55	-0.8
2,299,454	-		PFLU_RS10435	0.55	-0.5
2,299,454	-		PFLU_RS10435	0.55	+1.1
2,299,565	+		PFLU_RS10435	0.72	+1.2
2,299,565	+		PFLU_RS10435	0.72	+0.1
2,299,622	+		PFLU_RS10435	0.80	-0.4
2,299,622	+		PFLU_RS10435	0.80	-0.9
2,299,622	+		PFLU_RS10435	0.80	-0.9
2,299,622	+		PFLU_RS10435	0.80	-0.8
2,299,622	+		PFLU_RS10435	0.80	+0.9
2,299,622	+		PFLU_RS10435	0.80	-0.0
2,299,622	+		PFLU_RS10435	0.80	-1.2
2,299,623	-		PFLU_RS10435	0.80	-0.2
2,299,623	-		PFLU_RS10435	0.80	-0.4
2,299,786	-				-1.2
2,299,963	+		PFLU_RS10440	0.16	+0.0
2,299,963	+		PFLU_RS10440	0.16	+1.1
2,299,964	-		PFLU_RS10440	0.16	-0.7
2,299,987	+		PFLU_RS10440	0.17	+1.2
2,299,987	+		PFLU_RS10440	0.17	+1.0
2,299,987	+		PFLU_RS10440	0.17	-0.2
2,299,987	+		PFLU_RS10440	0.17	+0.1
2,299,988	-		PFLU_RS10440	0.17	+0.4
2,300,132	-		PFLU_RS10440	0.28	+0.0
2,300,132	-		PFLU_RS10440	0.28	+0.3
2,300,176	+		PFLU_RS10440	0.31	+0.5
2,300,176	+		PFLU_RS10440	0.31	+0.5
2,300,176	+		PFLU_RS10440	0.31	-0.2
2,300,177	-		PFLU_RS10440	0.31	+0.3
2,300,177	-		PFLU_RS10440	0.31	-0.3
2,300,177	-		PFLU_RS10440	0.31	-0.2
2,300,177	-		PFLU_RS10440	0.31	-0.2
2,300,177	-		PFLU_RS10440	0.31	+0.2
2,300,177	-		PFLU_RS10440	0.31	+0.1
2,300,177	-		PFLU_RS10440	0.31	-1.2
2,300,177	-		PFLU_RS10440	0.31	+0.4
2,300,702	+		PFLU_RS10440	0.70	-0.9
2,300,702	+		PFLU_RS10440	0.70	-0.5
2,300,702	+		PFLU_RS10440	0.70	+0.1
2,300,703	-		PFLU_RS10440	0.70	+1.2
2,300,703	-		PFLU_RS10440	0.70	+0.1
2,300,703	-		PFLU_RS10440	0.70	-1.6
2,300,703	-		PFLU_RS10440	0.70	+0.4
2,300,713	+		PFLU_RS10440	0.71	+0.1
2,300,714	-		PFLU_RS10440	0.71	+0.5
2,300,714	-		PFLU_RS10440	0.71	-0.3
2,300,714	-		PFLU_RS10440	0.71	+0.9
2,300,714	-		PFLU_RS10440	0.71	-0.3
2,300,714	-		PFLU_RS10440	0.71	+1.1
2,300,714	-		PFLU_RS10440	0.71	+0.6