Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08740

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08735 and BWI76_RS08740 overlap by 4 nucleotidesBWI76_RS08740 and BWI76_RS08745 are separated by 100 nucleotides BWI76_RS08735: BWI76_RS08735 - Urocanate hydratase (EC 4.2.1.49) (from data), at 1,839,699 to 1,841,387 _RS08735 BWI76_RS08740: BWI76_RS08740 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 1,841,384 to 1,842,907 _RS08740 BWI76_RS08745: BWI76_RS08745 - proline-specific permease, at 1,843,008 to 1,844,387 _RS08745 Position (kb) 1841 1842 1843Strain fitness (log2 ratio) -1 0 1 2at 1840.386 kb on + strand, within BWI76_RS08735at 1840.558 kb on - strand, within BWI76_RS08735at 1840.895 kb on + strand, within BWI76_RS08735at 1841.111 kb on + strand, within BWI76_RS08735at 1841.181 kb on - strand, within BWI76_RS08735at 1841.844 kb on + strand, within BWI76_RS08740at 1841.968 kb on + strand, within BWI76_RS08740at 1842.064 kb on - strand, within BWI76_RS08740at 1842.136 kb on + strandat 1842.263 kb on + strand, within BWI76_RS08740at 1842.272 kb on - strand, within BWI76_RS08740at 1842.482 kb on - strand, within BWI76_RS08740at 1842.597 kb on + strand, within BWI76_RS08740at 1843.359 kb on - strand, within BWI76_RS08745at 1843.361 kb on + strand, within BWI76_RS08745at 1843.748 kb on + strand, within BWI76_RS08745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
1,840,386 + BWI76_RS08735 0.41 +0.3
1,840,558 - BWI76_RS08735 0.51 +0.3
1,840,895 + BWI76_RS08735 0.71 -0.8
1,841,111 + BWI76_RS08735 0.84 +0.8
1,841,181 - BWI76_RS08735 0.88 -1.2
1,841,844 + BWI76_RS08740 0.30 +0.4
1,841,968 + BWI76_RS08740 0.38 +0.4
1,842,064 - BWI76_RS08740 0.45 -1.1
1,842,136 + -0.2
1,842,263 + BWI76_RS08740 0.58 +1.8
1,842,272 - BWI76_RS08740 0.58 +0.8
1,842,482 - BWI76_RS08740 0.72 +0.3
1,842,597 + BWI76_RS08740 0.80 +0.3
1,843,359 - BWI76_RS08745 0.25 +0.5
1,843,361 + BWI76_RS08745 0.26 -0.1
1,843,748 + BWI76_RS08745 0.54 +0.6

Or see this region's nucleotide sequence