Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1428 and dmaA-1 are separated by 19 nucleotides dmaA-1 and dmsB-1 are separated by 13 nucleotides dmsB-1 and SO1431 are separated by 57 nucleotides
SO1428: SO1428 - outer membrane protein (NCBI ptt file), at 1,489,180 to 1,491,168
SO1428
SO1429: dmaA-1 - anaerobic dimethyl sulfoxide reductase, A subunit (NCBI ptt file), at 1,491,188 to 1,493,698
dmaA-1
SO1430: dmsB-1 - anaerobic dimethyl sulfoxide reductase, B subunit (NCBI ptt file), at 1,493,712 to 1,494,386
dmsB-1
SO1431: SO1431 - conserved hypothetical protein (NCBI ptt file), at 1,494,444 to 1,495,109
SO1431
Position (kb) 1491
1492
1493
1494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1490.254 kb on + strand, within SO1428 at 1490.340 kb on + strand, within SO1428 at 1490.358 kb on + strand, within SO1428 at 1490.366 kb on - strand, within SO1428 at 1490.406 kb on + strand, within SO1428 at 1490.470 kb on + strand, within SO1428 at 1490.471 kb on + strand, within SO1428 at 1490.476 kb on + strand, within SO1428 at 1490.484 kb on - strand, within SO1428 at 1490.608 kb on - strand, within SO1428 at 1490.844 kb on - strand, within SO1428 at 1490.867 kb on + strand, within SO1428 at 1490.932 kb on - strand, within SO1428 at 1490.958 kb on - strand, within SO1428 at 1490.968 kb on - strand, within SO1428 at 1490.972 kb on + strand at 1490.980 kb on - strand at 1490.982 kb on - strand at 1490.996 kb on + strand at 1491.201 kb on - strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.221 kb on + strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.229 kb on - strand at 1491.446 kb on + strand, within dmaA-1 at 1491.447 kb on - strand, within dmaA-1 at 1491.469 kb on + strand, within dmaA-1 at 1491.504 kb on + strand, within dmaA-1 at 1491.504 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.506 kb on + strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.514 kb on - strand, within dmaA-1 at 1491.645 kb on - strand, within dmaA-1 at 1491.645 kb on - strand, within dmaA-1 at 1491.740 kb on - strand, within dmaA-1 at 1491.836 kb on + strand, within dmaA-1 at 1491.872 kb on + strand, within dmaA-1 at 1491.940 kb on + strand, within dmaA-1 at 1491.940 kb on + strand, within dmaA-1 at 1491.979 kb on - strand, within dmaA-1 at 1492.051 kb on + strand, within dmaA-1 at 1492.051 kb on + strand, within dmaA-1 at 1492.192 kb on - strand, within dmaA-1 at 1492.262 kb on + strand, within dmaA-1 at 1492.360 kb on - strand, within dmaA-1 at 1492.360 kb on - strand, within dmaA-1 at 1492.374 kb on - strand, within dmaA-1 at 1492.458 kb on - strand, within dmaA-1 at 1492.469 kb on + strand, within dmaA-1 at 1492.484 kb on + strand, within dmaA-1 at 1492.484 kb on + strand, within dmaA-1 at 1492.484 kb on + strand, within dmaA-1 at 1492.492 kb on - strand, within dmaA-1 at 1492.599 kb on - strand, within dmaA-1 at 1492.601 kb on + strand, within dmaA-1 at 1492.601 kb on + strand, within dmaA-1 at 1492.681 kb on + strand, within dmaA-1 at 1492.692 kb on + strand, within dmaA-1 at 1492.719 kb on + strand, within dmaA-1 at 1492.727 kb on - strand, within dmaA-1 at 1492.876 kb on + strand, within dmaA-1 at 1492.983 kb on + strand, within dmaA-1 at 1493.078 kb on + strand, within dmaA-1 at 1493.086 kb on - strand, within dmaA-1 at 1493.124 kb on + strand, within dmaA-1 at 1493.175 kb on - strand, within dmaA-1 at 1493.247 kb on + strand, within dmaA-1 at 1493.343 kb on + strand, within dmaA-1 at 1493.343 kb on + strand, within dmaA-1 at 1493.370 kb on + strand, within dmaA-1 at 1493.423 kb on + strand, within dmaA-1 at 1493.431 kb on - strand, within dmaA-1 at 1493.505 kb on + strand at 1493.513 kb on - strand at 1493.551 kb on + strand at 1493.676 kb on - strand at 1493.692 kb on + strand at 1493.700 kb on - strand at 1493.700 kb on - strand at 1493.805 kb on + strand, within dmsB-1 at 1493.813 kb on - strand, within dmsB-1 at 1493.970 kb on - strand, within dmsB-1 at 1493.970 kb on - strand, within dmsB-1 at 1493.981 kb on + strand, within dmsB-1 at 1493.991 kb on + strand, within dmsB-1 at 1493.991 kb on + strand, within dmsB-1 at 1493.991 kb on + strand, within dmsB-1 at 1494.142 kb on + strand, within dmsB-1 at 1494.157 kb on + strand, within dmsB-1 at 1494.262 kb on + strand, within dmsB-1 at 1494.381 kb on - strand at 1494.495 kb on + strand at 1494.508 kb on + strand at 1494.515 kb on + strand, within SO1431 at 1494.523 kb on - strand, within SO1431 at 1494.595 kb on - strand, within SO1431 at 1494.677 kb on + strand, within SO1431 at 1494.683 kb on - strand, within SO1431
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 1,490,254 + SO1428 0.54 +0.5 1,490,340 + SO1428 0.58 -1.7 1,490,358 + SO1428 0.59 +0.4 1,490,366 - SO1428 0.60 -0.2 1,490,406 + SO1428 0.62 -2.0 1,490,470 + SO1428 0.65 -2.4 1,490,471 + SO1428 0.65 +0.3 1,490,476 + SO1428 0.65 +0.2 1,490,484 - SO1428 0.66 +0.9 1,490,608 - SO1428 0.72 -0.0 1,490,844 - SO1428 0.84 -0.6 1,490,867 + SO1428 0.85 +0.8 1,490,932 - SO1428 0.88 -0.1 1,490,958 - SO1428 0.89 +2.9 1,490,968 - SO1428 0.90 -0.4 1,490,972 + +0.8 1,490,980 - +0.0 1,490,982 - +0.4 1,490,996 + +0.9 1,491,201 - -0.1 1,491,221 + -3.6 1,491,221 + +0.5 1,491,221 + -0.6 1,491,221 + +0.6 1,491,221 + -0.7 1,491,229 - +1.1 1,491,229 - -1.8 1,491,229 - +0.9 1,491,229 - +0.8 1,491,229 - -0.6 1,491,229 - +0.0 1,491,229 - +0.3 1,491,446 + dmaA-1 SO1429 0.10 -0.9 1,491,447 - dmaA-1 SO1429 0.10 +0.4 1,491,469 + dmaA-1 SO1429 0.11 +0.7 1,491,504 + dmaA-1 SO1429 0.13 +1.8 1,491,504 + dmaA-1 SO1429 0.13 +0.9 1,491,506 + dmaA-1 SO1429 0.13 -0.2 1,491,506 + dmaA-1 SO1429 0.13 +0.3 1,491,506 + dmaA-1 SO1429 0.13 -0.5 1,491,506 + dmaA-1 SO1429 0.13 -1.7 1,491,506 + dmaA-1 SO1429 0.13 +0.6 1,491,506 + dmaA-1 SO1429 0.13 -0.2 1,491,506 + dmaA-1 SO1429 0.13 -2.1 1,491,514 - dmaA-1 SO1429 0.13 -0.5 1,491,514 - dmaA-1 SO1429 0.13 +0.4 1,491,514 - dmaA-1 SO1429 0.13 -0.7 1,491,514 - dmaA-1 SO1429 0.13 +2.5 1,491,514 - dmaA-1 SO1429 0.13 -1.1 1,491,514 - dmaA-1 SO1429 0.13 +0.6 1,491,514 - dmaA-1 SO1429 0.13 +0.8 1,491,514 - dmaA-1 SO1429 0.13 +1.1 1,491,514 - dmaA-1 SO1429 0.13 +0.0 1,491,514 - dmaA-1 SO1429 0.13 -2.2 1,491,645 - dmaA-1 SO1429 0.18 +0.0 1,491,645 - dmaA-1 SO1429 0.18 +1.1 1,491,740 - dmaA-1 SO1429 0.22 +0.4 1,491,836 + dmaA-1 SO1429 0.26 -0.4 1,491,872 + dmaA-1 SO1429 0.27 -1.1 1,491,940 + dmaA-1 SO1429 0.30 -0.4 1,491,940 + dmaA-1 SO1429 0.30 +0.7 1,491,979 - dmaA-1 SO1429 0.32 +1.2 1,492,051 + dmaA-1 SO1429 0.34 -1.6 1,492,051 + dmaA-1 SO1429 0.34 +1.1 1,492,192 - dmaA-1 SO1429 0.40 +1.1 1,492,262 + dmaA-1 SO1429 0.43 -3.1 1,492,360 - dmaA-1 SO1429 0.47 -0.3 1,492,360 - dmaA-1 SO1429 0.47 -0.1 1,492,374 - dmaA-1 SO1429 0.47 +1.3 1,492,458 - dmaA-1 SO1429 0.51 +0.9 1,492,469 + dmaA-1 SO1429 0.51 +0.4 1,492,484 + dmaA-1 SO1429 0.52 -0.7 1,492,484 + dmaA-1 SO1429 0.52 -2.1 1,492,484 + dmaA-1 SO1429 0.52 +0.1 1,492,492 - dmaA-1 SO1429 0.52 +0.5 1,492,599 - dmaA-1 SO1429 0.56 +1.2 1,492,601 + dmaA-1 SO1429 0.56 +0.0 1,492,601 + dmaA-1 SO1429 0.56 +1.2 1,492,681 + dmaA-1 SO1429 0.59 +2.0 1,492,692 + dmaA-1 SO1429 0.60 -0.1 1,492,719 + dmaA-1 SO1429 0.61 +0.3 1,492,727 - dmaA-1 SO1429 0.61 -1.4 1,492,876 + dmaA-1 SO1429 0.67 -3.4 1,492,983 + dmaA-1 SO1429 0.71 -1.2 1,493,078 + dmaA-1 SO1429 0.75 +0.4 1,493,086 - dmaA-1 SO1429 0.76 -3.3 1,493,124 + dmaA-1 SO1429 0.77 +0.7 1,493,175 - dmaA-1 SO1429 0.79 -0.9 1,493,247 + dmaA-1 SO1429 0.82 +1.2 1,493,343 + dmaA-1 SO1429 0.86 -2.1 1,493,343 + dmaA-1 SO1429 0.86 +0.7 1,493,370 + dmaA-1 SO1429 0.87 -0.1 1,493,423 + dmaA-1 SO1429 0.89 -2.7 1,493,431 - dmaA-1 SO1429 0.89 -3.1 1,493,505 + -1.5 1,493,513 - +0.3 1,493,551 + -1.7 1,493,676 - +0.4 1,493,692 + -0.2 1,493,700 - +1.9 1,493,700 - +3.3 1,493,805 + dmsB-1 SO1430 0.14 -0.7 1,493,813 - dmsB-1 SO1430 0.15 -1.2 1,493,970 - dmsB-1 SO1430 0.38 -0.2 1,493,970 - dmsB-1 SO1430 0.38 +0.6 1,493,981 + dmsB-1 SO1430 0.40 -2.1 1,493,991 + dmsB-1 SO1430 0.41 -0.3 1,493,991 + dmsB-1 SO1430 0.41 -1.8 1,493,991 + dmsB-1 SO1430 0.41 -1.3 1,494,142 + dmsB-1 SO1430 0.64 -1.6 1,494,157 + dmsB-1 SO1430 0.66 -0.6 1,494,262 + dmsB-1 SO1430 0.81 -4.0 1,494,381 - -0.2 1,494,495 + -1.0 1,494,508 + -2.9 1,494,515 + SO1431 0.11 +0.1 1,494,523 - SO1431 0.12 +1.1 1,494,595 - SO1431 0.23 +1.6 1,494,677 + SO1431 0.35 +0.9 1,494,683 - SO1431 0.36 +0.2
Or see this region's nucleotide sequence