Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23380

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
5,254,535	+		PFLU_RS31055	0.81	-1.4
5,254,535	+		PFLU_RS31055	0.81	+0.0
5,254,535	+		PFLU_RS31055	0.81	+0.2
5,254,535	+		PFLU_RS31055	0.81	+0.8
5,254,535	+		PFLU_RS31055	0.81	-0.3
5,254,535	+		PFLU_RS31055	0.81	-1.5
5,254,535	+		PFLU_RS31055	0.81	+0.1
5,254,536	-		PFLU_RS31055	0.81	-2.6
5,254,536	-		PFLU_RS31055	0.81	+0.5
5,254,536	-		PFLU_RS31055	0.81	-0.7
5,254,536	-		PFLU_RS31055	0.81	+1.4
5,254,536	-		PFLU_RS31055	0.81	-0.6
5,254,536	-		PFLU_RS31055	0.81	+0.4
5,254,539	+		PFLU_RS31055	0.82	-0.4
5,254,539	+		PFLU_RS31055	0.82	-0.2
5,254,539	+		PFLU_RS31055	0.82	-0.4
5,254,539	+		PFLU_RS31055	0.82	-0.1
5,254,539	+		PFLU_RS31055	0.82	+0.3
5,254,539	+		PFLU_RS31055	0.82	-0.1
5,254,539	+		PFLU_RS31055	0.82	-0.2
5,254,539	+		PFLU_RS31055	0.82	+0.7
5,254,539	+		PFLU_RS31055	0.82	-0.2
5,254,539	+		PFLU_RS31055	0.82	+0.5
5,254,539	+		PFLU_RS31055	0.82	+1.3
5,254,539	+		PFLU_RS31055	0.82	+0.5
5,254,539	+		PFLU_RS31055	0.82	-1.1
5,254,539	+		PFLU_RS31055	0.82	-0.6
5,254,539	+		PFLU_RS31055	0.82	+0.9
5,254,539	+		PFLU_RS31055	0.82	-0.3
5,254,539	+		PFLU_RS31055	0.82	-0.2
5,254,539	+		PFLU_RS31055	0.82	-0.5
5,254,540	-		PFLU_RS31055	0.82	-0.2
5,254,540	-		PFLU_RS31055	0.82	+0.6
5,254,540	-		PFLU_RS31055	0.82	-0.4
5,254,540	-		PFLU_RS31055	0.82	-0.3
5,254,540	-		PFLU_RS31055	0.82	+1.7
5,254,540	-		PFLU_RS31055	0.82	+0.7
5,254,540	-		PFLU_RS31055	0.82	+0.0
5,254,540	-		PFLU_RS31055	0.82	+0.9
5,254,540	-		PFLU_RS31055	0.82	+2.3
5,254,540	-		PFLU_RS31055	0.82	+0.4
5,254,540	-		PFLU_RS31055	0.82	-1.8
5,254,540	-		PFLU_RS31055	0.82	+0.5
5,254,540	-		PFLU_RS31055	0.82	+0.6
5,254,540	-		PFLU_RS31055	0.82	-0.6
5,254,540	-		PFLU_RS31055	0.82	+0.3
5,254,540	-		PFLU_RS31055	0.82	-0.9
5,254,540	-		PFLU_RS31055	0.82	-0.3
5,254,540	-		PFLU_RS31055	0.82	-0.9
5,254,540	-		PFLU_RS31055	0.82	+0.8
5,254,631	+				+0.1
5,254,631	+				+0.4
5,254,631	+				-1.3
5,254,631	+				-1.0
5,254,631	+				+0.6
5,254,631	+				-0.5
5,254,631	+				+0.4
5,254,632	-				-0.5
5,254,632	-				-0.2
5,254,632	-				+0.2
5,254,632	-				+1.7
5,254,632	-				+0.7
5,254,632	-				-0.7
5,254,635	-				-0.1
5,254,661	+				+0.6
5,254,661	+				+0.4
5,254,661	+				-0.1
5,254,661	+				+0.6
5,254,661	+				-0.1
5,254,661	+				+2.1
5,254,661	+				+0.2
5,254,661	+				+0.3
5,254,661	+				+0.6
5,254,661	+				-0.2
5,254,661	+				-0.9
5,254,661	+				+0.9
5,254,661	+				-0.8
5,254,662	-				-0.5
5,254,662	-				-0.4
5,254,662	-				+0.4
5,254,662	-				+0.4
5,254,662	-				-0.2
5,254,662	-				+0.2
5,254,662	-				-0.0
5,254,662	-				+0.5
5,254,667	+				-0.4
5,254,668	-				+1.6
5,254,688	+				+0.5
5,254,689	-				+0.1
5,254,689	-				+0.0
5,254,695	+				+1.0
5,254,696	-				+0.3
5,254,721	-				-0.5
5,254,721	-				-2.1
5,254,736	-				-1.3
5,254,736	-				-1.2
5,254,736	-				-0.8
5,254,736	-				-0.1
5,254,742	-				-1.2
5,254,742	-				+0.2
5,254,742	-				+0.3
5,254,742	-				-0.0
5,254,742	-				+0.4
5,254,744	+				+1.0
5,254,744	+				+0.6
5,254,744	+				+0.8
5,254,744	+				-0.7
5,254,744	+				-1.9
5,254,744	+				-0.8
5,254,744	+				+0.3
5,254,745	-				+1.3
5,254,745	-				-0.6
5,254,745	-				+0.3
5,254,799	+				+0.6
5,254,799	+				-0.9
5,254,799	+				-1.2
5,254,799	+				-0.3
5,254,799	+				-0.7
5,254,799	+				+0.4
5,254,799	+				+1.6
5,254,799	+				+0.2
5,254,799	+				+0.2
5,254,799	+				-1.0
5,254,799	+				+0.7
5,254,799	+				+1.8
5,254,799	+				+0.3
5,254,800	-				+0.8
5,254,800	-				+1.0
5,254,800	-				-0.8
5,254,800	-				-0.2
5,254,800	-				+1.3
5,254,800	-				+0.9
5,254,800	-				-0.4
5,254,800	-				-1.2
5,254,800	-				+0.9
5,254,803	+				-0.9
5,254,803	+				-0.5
5,254,803	+				-0.2
5,254,803	+				+0.0
5,254,803	+				+0.3
5,254,803	+				-0.8
5,254,803	+				+0.3
5,254,803	+				+0.1
5,254,803	+				+0.2
5,254,803	+				-0.2
5,254,803	+				+0.5
5,254,803	+				-1.6
5,254,804	-				+0.1
5,254,804	-				+0.2
5,254,804	-				+1.4
5,254,804	-				+0.4
5,254,804	-				-0.2
5,254,804	-				-0.6
5,254,804	-				+0.2
5,254,804	-				-0.3
5,254,804	-				-0.6
5,254,945	+		PFLU_RS23375	0.29	+0.7
5,254,945	+		PFLU_RS23375	0.29	-0.2
5,254,962	+		PFLU_RS23375	0.32	+0.4
5,254,962	+		PFLU_RS23375	0.32	-0.8
5,254,962	+		PFLU_RS23375	0.32	-0.8
5,254,962	+		PFLU_RS23375	0.32	-0.6
5,254,962	+		PFLU_RS23375	0.32	+0.7
5,254,962	+		PFLU_RS23375	0.32	-0.3
5,254,962	+		PFLU_RS23375	0.32	+0.2
5,254,962	+		PFLU_RS23375	0.32	+0.0
5,254,962	+		PFLU_RS23375	0.32	+0.5
5,254,962	+		PFLU_RS23375	0.32	+0.6
5,254,962	+		PFLU_RS23375	0.32	+0.4
5,254,963	-		PFLU_RS23375	0.32	-0.3
5,254,963	-		PFLU_RS23375	0.32	-0.7
5,254,963	-		PFLU_RS23375	0.32	-0.0
5,254,963	-		PFLU_RS23375	0.32	-0.9
5,254,963	-		PFLU_RS23375	0.32	+1.0
5,254,963	-		PFLU_RS23375	0.32	+0.6
5,254,970	+		PFLU_RS23375	0.33	+0.1
5,254,970	+		PFLU_RS23375	0.33	-0.9
5,254,970	+		PFLU_RS23375	0.33	+0.2
5,254,970	+		PFLU_RS23375	0.33	+1.9
5,254,970	+		PFLU_RS23375	0.33	-0.6
5,254,970	+		PFLU_RS23375	0.33	+0.7
5,254,970	+		PFLU_RS23375	0.33	+0.5
5,254,970	+		PFLU_RS23375	0.33	+0.0
5,254,970	+		PFLU_RS23375	0.33	-0.4
5,254,970	+		PFLU_RS23375	0.33	-0.9
5,254,971	-		PFLU_RS23375	0.33	+0.3
5,254,971	-		PFLU_RS23375	0.33	-0.4
5,254,971	-		PFLU_RS23375	0.33	+0.7
5,254,971	-		PFLU_RS23375	0.33	+0.1
5,254,971	-		PFLU_RS23375	0.33	+0.9
5,254,971	-		PFLU_RS23375	0.33	-0.0
5,254,971	-		PFLU_RS23375	0.33	-0.3
5,254,971	-		PFLU_RS23375	0.33	-0.0
5,254,971	-		PFLU_RS23375	0.33	+1.7
5,254,971	-		PFLU_RS23375	0.33	-0.5
5,254,971	-		PFLU_RS23375	0.33	+0.4
5,254,972	+		PFLU_RS23375	0.33	+0.6
5,254,972	+		PFLU_RS23375	0.33	-0.1
5,254,972	+		PFLU_RS23375	0.33	-2.4
5,254,972	+		PFLU_RS23375	0.33	-0.3
5,254,972	+		PFLU_RS23375	0.33	-0.2
5,254,972	+		PFLU_RS23375	0.33	-1.0
5,254,972	+		PFLU_RS23375	0.33	+0.7
5,254,972	+		PFLU_RS23375	0.33	+0.1
5,254,972	+		PFLU_RS23375	0.33	+0.5
5,254,973	-		PFLU_RS23375	0.33	-1.4
5,254,973	-		PFLU_RS23375	0.33	+0.9
5,254,973	-		PFLU_RS23375	0.33	-0.7
5,254,973	-		PFLU_RS23375	0.33	+0.2
5,254,973	-		PFLU_RS23375	0.33	-0.8
5,254,973	-		PFLU_RS23375	0.33	-0.9
5,255,001	+		PFLU_RS23375	0.37	-0.1
5,255,001	+		PFLU_RS23375	0.37	+0.8
5,255,002	-		PFLU_RS23375	0.37	+1.5
5,255,002	-		PFLU_RS23375	0.37	-0.3
5,255,011	+		PFLU_RS23375	0.39	+0.6
5,255,011	+		PFLU_RS23375	0.39	-0.1
5,255,011	+		PFLU_RS23375	0.39	+0.2
5,255,040	+		PFLU_RS23375	0.43	+0.7
5,255,040	+		PFLU_RS23375	0.43	-0.1
5,255,040	+		PFLU_RS23375	0.43	-1.2
5,255,040	+		PFLU_RS23375	0.43	+1.0
5,255,041	-		PFLU_RS23375	0.43	+1.2
5,255,041	-		PFLU_RS23375	0.43	-0.5
5,255,041	-		PFLU_RS23375	0.43	+0.2
5,255,041	-		PFLU_RS23375	0.43	+0.2
5,255,041	-		PFLU_RS23375	0.43	-0.4
5,255,041	-		PFLU_RS23375	0.43	+0.2
5,255,086	+		PFLU_RS23375	0.49	-0.1
5,255,086	+		PFLU_RS23375	0.49	-0.4
5,255,087	-		PFLU_RS23375	0.49	+0.6
5,255,130	+		PFLU_RS23375	0.55	-1.5
5,255,131	-		PFLU_RS23375	0.55	+0.1
5,255,160	+		PFLU_RS23375	0.59	-0.2
5,255,160	+		PFLU_RS23375	0.59	+0.5
5,255,160	+		PFLU_RS23375	0.59	-0.7
5,255,160	+		PFLU_RS23375	0.59	+0.8
5,255,161	-		PFLU_RS23375	0.60	-0.3
5,255,292	+		PFLU_RS23375	0.78	-0.7
5,255,292	+		PFLU_RS23375	0.78	-0.4
5,255,292	+		PFLU_RS23375	0.78	+0.7
5,255,292	+		PFLU_RS23375	0.78	+0.2
5,255,292	+		PFLU_RS23375	0.78	+1.4
5,255,292	+		PFLU_RS23375	0.78	+0.3
5,255,292	+		PFLU_RS23375	0.78	+0.8
5,255,292	+		PFLU_RS23375	0.78	+0.5
5,255,292	+		PFLU_RS23375	0.78	+0.5
5,255,292	+		PFLU_RS23375	0.78	+1.0
5,255,292	+		PFLU_RS23375	0.78	+0.7
5,255,292	+		PFLU_RS23375	0.78	+0.5
5,255,292	+		PFLU_RS23375	0.78	+0.3
5,255,292	+		PFLU_RS23375	0.78	+0.3
5,255,292	+		PFLU_RS23375	0.78	+0.8
5,255,292	+		PFLU_RS23375	0.78	-0.5
5,255,293	-		PFLU_RS23375	0.78	+0.1
5,255,293	-		PFLU_RS23375	0.78	-0.3
5,255,293	-		PFLU_RS23375	0.78	-0.9
5,255,293	-		PFLU_RS23375	0.78	+0.1
5,255,293	-		PFLU_RS23375	0.78	+0.3
5,255,293	-		PFLU_RS23375	0.78	-1.1
5,255,293	-		PFLU_RS23375	0.78	-0.5
5,255,293	-		PFLU_RS23375	0.78	-0.8
5,255,293	-		PFLU_RS23375	0.78	+0.6
5,255,346	+		PFLU_RS23375	0.85	-0.3
5,255,346	+		PFLU_RS23375	0.85	-0.2
5,255,347	-		PFLU_RS23375	0.86	+0.7
5,255,417	+				-1.3
5,255,417	+				-0.9
5,255,418	-				+0.2
5,255,447	+				+0.0
5,255,448	-				+0.3
5,255,448	-				-0.1
5,255,448	-				+0.6
5,255,485	+				+0.4
5,255,488	+				+0.4
5,255,488	+				-0.5
5,255,488	+				-1.8
5,255,488	+				-1.6
5,255,488	+				-0.6
5,255,488	+				-1.2
5,255,488	+				-0.4
5,255,489	-				-1.6
5,255,489	-				-2.0
5,255,489	-				-1.3
5,255,489	-				-2.4
5,255,492	+				-0.4
5,255,492	+				-0.5
5,255,492	+				-0.4
5,255,492	+				-3.7
5,255,492	+				+0.4
5,255,492	+				-1.4
5,255,492	+				+0.1
5,255,492	+				+0.3
5,255,492	+				-0.7
5,255,492	+				-0.2
5,255,493	-				-0.4
5,255,493	-				-1.2
5,255,493	-				-2.1
5,255,493	-				-2.4
5,255,493	-				-1.9
5,255,553	+				-1.8
5,255,554	-				-1.2
5,255,554	-				-1.5
5,255,737	+		PFLU_RS23380	0.33	-1.5
5,255,737	+		PFLU_RS23380	0.33	-1.2
5,255,737	+		PFLU_RS23380	0.33	-2.6
5,255,737	+		PFLU_RS23380	0.33	-2.1
5,255,737	+		PFLU_RS23380	0.33	-1.9
5,255,989	+		PFLU_RS23380	0.72	-2.4
5,256,050	+		PFLU_RS23380	0.82	-2.0
5,256,187	-				+1.1
5,256,187	-				-0.8
5,256,187	-				+1.4
5,256,194	-				-0.3
5,256,228	+				+0.1
5,256,228	+				+1.4
5,256,229	-				+0.2
5,256,229	-				+0.4
5,256,229	-				-0.3
5,256,229	-				-0.1
5,256,254	+		PFLU_RS23385	0.15	+0.1
5,256,255	-		PFLU_RS23385	0.16	-1.2
5,256,281	+		PFLU_RS23385	0.22	+0.4
5,256,281	+		PFLU_RS23385	0.22	-0.0
5,256,281	+		PFLU_RS23385	0.22	+0.2
5,256,282	-		PFLU_RS23385	0.22	-0.1
5,256,282	-		PFLU_RS23385	0.22	+0.0
5,256,282	-		PFLU_RS23385	0.22	-0.8
5,256,282	-		PFLU_RS23385	0.22	-1.2
5,256,282	-		PFLU_RS23385	0.22	+1.3
5,256,300	+		PFLU_RS23385	0.27	+1.3
5,256,300	+		PFLU_RS23385	0.27	-0.4
5,256,300	+		PFLU_RS23385	0.27	+0.0
5,256,301	-		PFLU_RS23385	0.27	+0.5
5,256,301	-		PFLU_RS23385	0.27	+0.7
5,256,301	-		PFLU_RS23385	0.27	-0.6
5,256,301	-		PFLU_RS23385	0.27	-1.2
5,256,317	+		PFLU_RS23385	0.31	-0.3
5,256,318	-		PFLU_RS23385	0.31	-0.8
5,256,382	+		PFLU_RS23385	0.47	-1.0
5,256,382	+		PFLU_RS23385	0.47	+1.3
5,256,386	+		PFLU_RS23385	0.48	+0.2
5,256,386	+		PFLU_RS23385	0.48	-0.5
5,256,386	+		PFLU_RS23385	0.48	+0.4
5,256,386	+		PFLU_RS23385	0.48	+0.5
5,256,386	+		PFLU_RS23385	0.48	+0.1
5,256,386	+		PFLU_RS23385	0.48	-0.8
5,256,386	+		PFLU_RS23385	0.48	-0.9
5,256,386	+		PFLU_RS23385	0.48	-0.8
5,256,386	+		PFLU_RS23385	0.48	+1.7
5,256,386	+		PFLU_RS23385	0.48	-0.5
5,256,386	+		PFLU_RS23385	0.48	-0.7
5,256,386	+		PFLU_RS23385	0.48	+1.1
5,256,386	+		PFLU_RS23385	0.48	+1.2
5,256,386	+		PFLU_RS23385	0.48	+1.5
5,256,386	+		PFLU_RS23385	0.48	+0.7
5,256,386	+		PFLU_RS23385	0.48	-0.3
5,256,386	+		PFLU_RS23385	0.48	+0.6
5,256,386	+		PFLU_RS23385	0.48	+0.8
5,256,387	-		PFLU_RS23385	0.48	+0.7
5,256,387	-		PFLU_RS23385	0.48	+1.7
5,256,387	-		PFLU_RS23385	0.48	-0.9
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