Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13485

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
3,053,378	-		PFLU_RS13480	0.73	-1.0
3,053,479	+		PFLU_RS13480	0.76	-0.6
3,053,479	+		PFLU_RS13480	0.76	-0.9
3,053,479	+		PFLU_RS13480	0.76	-0.9
3,053,479	+		PFLU_RS13480	0.76	+0.1
3,053,479	+		PFLU_RS13480	0.76	-0.1
3,053,479	+		PFLU_RS13480	0.76	-2.2
3,053,479	+		PFLU_RS13480	0.76	+1.6
3,053,479	+		PFLU_RS13480	0.76	-1.4
3,053,480	-		PFLU_RS13480	0.76	-2.0
3,053,480	-		PFLU_RS13480	0.76	+0.3
3,053,480	-		PFLU_RS13480	0.76	-2.6
3,053,480	-		PFLU_RS13480	0.76	-2.3
3,053,480	-		PFLU_RS13480	0.76	-2.6
3,053,480	-		PFLU_RS13480	0.76	-1.2
3,053,845	+		PFLU_RS13480	0.87	-0.9
3,053,845	+		PFLU_RS13480	0.87	-0.9
3,053,846	-		PFLU_RS13480	0.87	-0.9
3,053,846	-		PFLU_RS13480	0.87	-0.6
3,053,846	-		PFLU_RS13480	0.87	-0.6
3,053,846	-		PFLU_RS13480	0.87	-2.3
3,053,898	+		PFLU_RS13480	0.88	-2.1
3,053,911	+		PFLU_RS13480	0.89	-0.8
3,053,911	+		PFLU_RS13480	0.89	-2.1
3,053,911	+		PFLU_RS13480	0.89	-1.2
3,053,911	+		PFLU_RS13480	0.89	-1.2
3,053,912	-		PFLU_RS13480	0.89	-0.7
3,053,914	-		PFLU_RS13480	0.89	-0.8
3,053,972	+				+0.5
3,053,972	+				-1.9
3,053,972	+				-0.5
3,053,972	+				-0.1
3,053,972	+				-0.4
3,053,972	+				+0.2
3,053,972	+				+0.4
3,053,972	+				-0.6
3,053,973	-				-0.3
3,053,973	-				-0.3
3,053,973	-				-2.7
3,054,067	+				+0.7
3,054,068	-				-0.2
3,054,084	+				-0.0
3,054,084	+				-0.6
3,054,084	+				+0.3
3,054,085	-				-0.6
3,054,161	-				-2.6
3,054,172	+				-0.4
3,054,249	+				-0.9
3,054,249	+				+1.0
3,054,249	+				+0.9
3,054,249	+				+1.1
3,054,249	+				+1.0
3,054,249	+				+1.6
3,054,249	+				+0.2
3,054,249	+				+1.4
3,054,249	+				-0.5
3,054,249	+				-0.1
3,054,249	+				-1.5
3,054,250	-				-0.7
3,054,250	-				-2.5
3,054,250	-				-0.6
3,054,250	-				-1.3
3,054,250	-				-1.9
3,054,250	-				-1.4
3,054,250	-				+0.4
3,054,250	-				-0.1
3,054,250	-				-1.2
3,054,250	-				-0.4
3,054,250	-				+0.1
3,054,250	-				-0.9
3,054,250	-				-2.2
3,054,290	+				-3.0
3,054,291	-				-2.5
3,054,296	+				-1.9
3,054,296	+				-1.8
3,054,297	-				-1.6
3,054,297	-				-2.6
3,054,359	-				-2.3
3,054,451	+				-1.8
3,054,451	+				-1.5
3,054,451	+				-1.9
3,054,451	+				-1.5
3,054,451	+				-1.9
3,054,451	+				-4.1
3,054,452	-				-2.3
3,054,452	-				-0.5
3,054,452	-				-3.2
3,054,452	-				-3.2
3,054,555	+		PFLU_RS13485	0.12	-3.1
3,054,555	+		PFLU_RS13485	0.12	-1.7
3,054,556	-		PFLU_RS13485	0.12	-2.0
3,054,556	-		PFLU_RS13485	0.12	-3.1
3,054,556	-		PFLU_RS13485	0.12	-2.1
3,054,556	-		PFLU_RS13485	0.12	-0.9
3,054,556	-		PFLU_RS13485	0.12	-1.9
3,054,606	+		PFLU_RS13485	0.14	-2.5
3,054,606	+		PFLU_RS13485	0.14	-1.3
3,054,606	+		PFLU_RS13485	0.14	-2.5
3,054,607	-		PFLU_RS13485	0.15	-1.1
3,054,607	-		PFLU_RS13485	0.15	-4.2
3,054,607	-		PFLU_RS13485	0.15	-3.7
3,054,645	+		PFLU_RS13485	0.16	-1.5
3,054,645	+		PFLU_RS13485	0.16	+0.7
3,054,645	+		PFLU_RS13485	0.16	-1.4
3,054,645	+		PFLU_RS13485	0.16	-3.4
3,054,646	-		PFLU_RS13485	0.16	-3.5
3,054,646	-		PFLU_RS13485	0.16	-2.5
3,054,646	-		PFLU_RS13485	0.16	-3.3
3,054,646	-		PFLU_RS13485	0.16	-2.9
3,054,785	+		PFLU_RS13485	0.22	-1.9
3,054,785	+		PFLU_RS13485	0.22	-2.3
3,054,876	+		PFLU_RS13485	0.27	-1.8
3,054,876	+		PFLU_RS13485	0.27	-1.3
3,054,877	-		PFLU_RS13485	0.27	-1.7
3,054,882	+		PFLU_RS13485	0.27	-3.4
3,054,882	+		PFLU_RS13485	0.27	-2.5
3,054,882	+		PFLU_RS13485	0.27	-1.8
3,055,062	+		PFLU_RS13485	0.35	-1.5
3,055,063	-		PFLU_RS13485	0.35	-0.9
3,055,125	+		PFLU_RS13485	0.38	-1.9
3,055,125	+		PFLU_RS13485	0.38	-3.2
3,055,125	+		PFLU_RS13485	0.38	-2.1
3,055,125	+		PFLU_RS13485	0.38	-1.9
3,055,126	-		PFLU_RS13485	0.38	-2.4
3,055,161	+		PFLU_RS13485	0.39	-1.8
3,055,161	+		PFLU_RS13485	0.39	-0.4
3,055,161	+		PFLU_RS13485	0.39	-2.6
3,055,161	+		PFLU_RS13485	0.39	-1.5
3,055,161	+		PFLU_RS13485	0.39	-2.4
3,055,161	+		PFLU_RS13485	0.39	-1.3
3,055,162	-		PFLU_RS13485	0.39	-1.8
3,055,162	-		PFLU_RS13485	0.39	-2.0
3,055,162	-		PFLU_RS13485	0.39	-2.1
3,055,237	-		PFLU_RS13485	0.43	-2.5
3,055,297	-		PFLU_RS13485	0.45	-2.2
3,055,407	+		PFLU_RS13485	0.50	-2.3
3,055,408	-		PFLU_RS13485	0.50	-2.8
3,055,408	-		PFLU_RS13485	0.50	-2.1
3,055,413	+		PFLU_RS13485	0.51	-0.9
3,055,414	-		PFLU_RS13485	0.51	-2.9
3,055,461	+		PFLU_RS13485	0.53	-1.5
3,055,461	+		PFLU_RS13485	0.53	-1.5
3,055,461	+		PFLU_RS13485	0.53	-3.4
3,055,461	+		PFLU_RS13485	0.53	-2.2
3,055,461	+		PFLU_RS13485	0.53	-1.3
3,055,461	+		PFLU_RS13485	0.53	-2.4
3,055,462	-		PFLU_RS13485	0.53	-0.6
3,055,462	-		PFLU_RS13485	0.53	-3.1
3,055,462	-		PFLU_RS13485	0.53	-4.0
3,055,462	-		PFLU_RS13485	0.53	-2.7
3,055,462	-		PFLU_RS13485	0.53	-2.2
3,055,491	+		PFLU_RS13485	0.54	-3.7
3,055,491	+		PFLU_RS13485	0.54	-1.5
3,055,492	-		PFLU_RS13485	0.54	-1.8
3,055,492	-		PFLU_RS13485	0.54	-3.9
3,055,492	-		PFLU_RS13485	0.54	-2.4
3,055,572	+		PFLU_RS13485	0.58	-2.9
3,055,573	-		PFLU_RS13485	0.58	-1.6
3,055,773	+		PFLU_RS13485	0.67	-2.9
3,055,773	+		PFLU_RS13485	0.67	-2.9
3,055,773	+		PFLU_RS13485	0.67	-1.9
3,055,773	+		PFLU_RS13485	0.67	-4.2
3,055,773	+		PFLU_RS13485	0.67	-1.9
3,055,773	+		PFLU_RS13485	0.67	-2.4
3,055,773	+		PFLU_RS13485	0.67	-1.9
3,055,774	-		PFLU_RS13485	0.67	-2.2
3,055,774	-		PFLU_RS13485	0.67	-3.2
3,055,774	-		PFLU_RS13485	0.67	-3.1
3,055,774	-		PFLU_RS13485	0.67	-2.6
3,055,774	-		PFLU_RS13485	0.67	-2.2
3,055,774	-		PFLU_RS13485	0.67	-3.5
3,055,812	+		PFLU_RS13485	0.68	-3.3
3,055,812	+		PFLU_RS13485	0.68	-2.4
3,055,812	+		PFLU_RS13485	0.68	-2.4
3,055,812	+		PFLU_RS13485	0.68	-2.1
3,055,812	+		PFLU_RS13485	0.68	-3.6
3,055,813	-		PFLU_RS13485	0.68	-1.1
3,055,813	-		PFLU_RS13485	0.68	-0.7
3,055,813	-		PFLU_RS13485	0.68	-3.0
3,055,813	-		PFLU_RS13485	0.68	-1.5
3,055,834	-		PFLU_RS13485	0.69	-3.1
3,055,875	+		PFLU_RS13485	0.71	-2.1
3,055,875	+		PFLU_RS13485	0.71	-0.4
3,055,875	+		PFLU_RS13485	0.71	-3.2
3,055,875	+		PFLU_RS13485	0.71	-2.5
3,055,875	+		PFLU_RS13485	0.71	-2.4
3,055,875	+		PFLU_RS13485	0.71	-1.2
3,055,875	+		PFLU_RS13485	0.71	-1.5
3,055,875	+		PFLU_RS13485	0.71	-1.8
3,055,875	+		PFLU_RS13485	0.71	-3.6
3,055,875	+		PFLU_RS13485	0.71	-3.5
3,055,875	+		PFLU_RS13485	0.71	-2.8
3,055,875	+		PFLU_RS13485	0.71	-3.1
3,055,875	+		PFLU_RS13485	0.71	-3.6
3,055,875	+		PFLU_RS13485	0.71	-0.8
3,055,876	-		PFLU_RS13485	0.71	-2.8
3,055,876	-		PFLU_RS13485	0.71	-3.1
3,055,876	-		PFLU_RS13485	0.71	-3.4
3,055,876	-		PFLU_RS13485	0.71	-2.1
3,055,876	-		PFLU_RS13485	0.71	-2.5
3,055,876	-		PFLU_RS13485	0.71	-1.4
3,055,876	-		PFLU_RS13485	0.71	-1.7
3,055,876	-		PFLU_RS13485	0.71	-3.4
3,055,895	+		PFLU_RS13485	0.72	-2.4
3,055,896	-		PFLU_RS13485	0.72	-1.3
3,055,995	+		PFLU_RS13485	0.77	-3.6
3,055,995	+		PFLU_RS13485	0.77	-1.8
3,055,995	+		PFLU_RS13485	0.77	-1.7
3,055,996	-		PFLU_RS13485	0.77	-3.5
3,055,996	-		PFLU_RS13485	0.77	-1.4
3,055,996	-		PFLU_RS13485	0.77	-3.0
3,056,097	+		PFLU_RS13485	0.81	-0.9
3,056,097	+		PFLU_RS13485	0.81	-0.9
3,056,097	+		PFLU_RS13485	0.81	-2.1
3,056,097	+		PFLU_RS13485	0.81	-1.8
3,056,098	-		PFLU_RS13485	0.81	-1.9
3,056,247	+		PFLU_RS13485	0.88	-3.8
3,056,248	-		PFLU_RS13485	0.88	-2.5
3,056,248	-		PFLU_RS13485	0.88	+0.1
3,056,248	-		PFLU_RS13485	0.88	-0.5
3,056,248	-		PFLU_RS13485	0.88	-3.7
3,056,325	+				-2.2
3,056,325	+				-2.9
3,056,325	+				-2.3
3,056,325	+				-2.3
3,056,325	+				-2.9
3,056,325	+				-2.3
3,056,326	-				-2.8
3,056,326	-				-2.9
3,056,388	+				-2.7
3,056,388	+				-1.6
3,056,388	+				-1.7
3,056,388	+				-1.5
3,056,388	+				-3.5
3,056,388	+				-4.2
3,056,388	+				-3.2
3,056,388	+				-2.0
3,056,388	+				-2.4
3,056,388	+				-2.4
3,056,388	+				-2.1
3,056,388	+				-2.9
3,056,388	+				-1.8
3,056,388	+				-3.4
3,056,388	+				-3.0
3,056,388	+				-1.8
3,056,388	+				-2.3
3,056,388	+				-0.6
3,056,388	+				-3.4
3,056,388	+				-1.9
3,056,388	+				-3.1
3,056,388	+				-2.4
3,056,388	+				-1.8
3,056,389	-				-2.4
3,056,389	-				-0.7
3,056,389	-				-2.3
3,056,389	-				-2.0
3,056,389	-				-2.2
3,056,389	-				+0.3
3,056,389	-				-1.3
3,056,389	-				-4.1
3,056,389	-				-1.3
3,056,389	-				-2.6
3,056,389	-				-1.4
3,056,389	-				-1.0
3,056,389	-				-1.6
3,056,389	-				-1.6
3,056,389	-				-2.0
3,056,389	-				-0.5
3,056,389	-				-3.5
3,056,389	-				-2.6
3,056,403	+				-2.9
3,056,403	+				-3.4
3,056,403	+				-2.6
3,056,404	-				-2.3
3,056,404	-				-2.3
3,056,427	-				-0.5
3,056,517	+				-0.4
3,056,526	+				-0.2
3,056,526	+				-0.4
3,056,648	+				+0.9
3,056,648	+				-0.1
3,056,648	+				-0.0
3,056,648	+				-0.1
3,056,649	-				-0.3
3,056,649	-				-0.9
3,056,650	+				-0.7
3,056,650	+				-0.6
3,056,650	+				+0.3
3,056,650	+				-0.2
3,056,650	+				-0.6
3,056,651	-				-0.2
3,056,651	-				-0.9
3,056,651	-				-1.0
3,056,721	+		PFLU_RS13490	0.13	+0.1
3,056,721	+		PFLU_RS13490	0.13	-1.1
3,056,721	+		PFLU_RS13490	0.13	-1.1
3,056,721	+		PFLU_RS13490	0.13	-0.5
3,056,721	+		PFLU_RS13490	0.13	+0.4
3,056,721	+		PFLU_RS13490	0.13	-0.2
3,056,722	-		PFLU_RS13490	0.13	-0.2
3,056,722	-		PFLU_RS13490	0.13	+0.0
3,057,027	+		PFLU_RS13490	0.39	+0.4
3,057,027	+		PFLU_RS13490	0.39	-1.0
3,057,028	-		PFLU_RS13490	0.39	+0.2
3,057,036	+		PFLU_RS13490	0.40	-0.1
3,057,037	-		PFLU_RS13490	0.40	-0.9
3,057,042	+		PFLU_RS13490	0.40	+1.3
3,057,042	+		PFLU_RS13490	0.40	+2.0
3,057,042	+		PFLU_RS13490	0.40	+0.4
3,057,043	-		PFLU_RS13490	0.40	+0.1
3,057,043	-		PFLU_RS13490	0.40	+0.6
3,057,083	+		PFLU_RS13490	0.44	-0.1
3,057,084	-		PFLU_RS13490	0.44	+0.9
3,057,239	+		PFLU_RS13490	0.57	+1.0
3,057,239	+		PFLU_RS13490	0.57	+0.9
3,057,239	+		PFLU_RS13490	0.57	+0.4
3,057,239	+		PFLU_RS13490	0.57	-0.3
3,057,239	+		PFLU_RS13490	0.57	-2.4
3,057,239	+		PFLU_RS13490	0.57	+0.6
3,057,239	+		PFLU_RS13490	0.57	+0.5
3,057,240	-		PFLU_RS13490	0.57	-1.1
3,057,240	-		PFLU_RS13490	0.57	+0.1
3,057,240	-		PFLU_RS13490	0.57	-0.5
3,057,240	-		PFLU_RS13490	0.57	-1.0
3,057,240	-		PFLU_RS13490	0.57	+1.4
3,057,240	-		PFLU_RS13490	0.57	+1.4
3,057,321	+		PFLU_RS13490	0.64	-0.1
3,057,322	-		PFLU_RS13490	0.64	+0.1
3,057,402	+		PFLU_RS13490	0.71	-0.3
3,057,402	+		PFLU_RS13490	0.71	-1.0
3,057,403	-		PFLU_RS13490	0.71	+1.1
3,057,403	-		PFLU_RS13490	0.71	-0.3
3,057,403	-		PFLU_RS13490	0.71	-0.6
3,057,481	-		PFLU_RS13490	0.78	-1.0
3,057,481	-		PFLU_RS13490	0.78	-0.0
3,057,481	-		PFLU_RS13490	0.78	-0.0
3,057,511	+		PFLU_RS13490	0.81	-0.5