Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08180

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
1,827,773	+		PFLU_RS30525	0.69	+0.3
1,827,773	+		PFLU_RS30525	0.69	-0.8
1,827,773	+		PFLU_RS30525	0.69	-1.8
1,827,774	-		PFLU_RS30525	0.69	-0.6
1,827,774	-		PFLU_RS30525	0.69	-1.3
1,827,774	-		PFLU_RS30525	0.69	-2.2
1,827,774	-		PFLU_RS30525	0.69	-2.8
1,827,786	+		PFLU_RS30525	0.71	-1.6
1,827,786	+		PFLU_RS30525	0.71	-2.7
1,827,786	+		PFLU_RS30525	0.71	-3.6
1,827,787	-		PFLU_RS30525	0.71	-1.9
1,827,796	-		PFLU_RS30525	0.72	-2.8
1,827,837	+		PFLU_RS30525	0.77	-1.7
1,827,838	-		PFLU_RS30525	0.77	-2.4
1,827,852	-		PFLU_RS30525	0.79	-2.6
1,827,875	+		PFLU_RS30525	0.82	-2.9
1,827,876	-		PFLU_RS30525	0.82	-3.0
1,827,896	+		PFLU_RS30525	0.85	-2.2
1,827,920	+		PFLU_RS30525	0.88	-1.8
1,827,920	+		PFLU_RS30525	0.88	-1.6
1,827,920	+		PFLU_RS30525	0.88	-1.4
1,827,920	+		PFLU_RS30525	0.88	-1.4
1,827,921	-		PFLU_RS30525	0.88	-3.7
1,827,921	-		PFLU_RS30525	0.88	-0.3
1,827,925	+		PFLU_RS30525	0.89	-3.6
1,827,926	-		PFLU_RS30525	0.89	-2.7
1,827,926	-		PFLU_RS30525	0.89	-1.9
1,827,933	+				-2.8
1,827,934	-				-1.6
1,827,934	-				-1.1
1,827,937	+				-0.4
1,827,937	+				-1.9
1,827,937	+				-1.5
1,827,937	+				-1.5
1,827,937	+				-1.4
1,827,937	+				-1.6
1,827,938	-				-2.4
1,827,938	-				-2.6
1,827,938	-				-1.4
1,827,972	+				-3.3
1,827,980	+				-1.5
1,827,980	+				-2.9
1,827,981	-				-2.0
1,827,997	+				-2.8
1,827,998	-				+0.1
1,828,024	+				-2.4
1,828,028	-				-2.4
1,828,100	+		PFLU_RS30530	0.14	-1.4
1,828,100	+		PFLU_RS30530	0.14	-2.4
1,828,100	+		PFLU_RS30530	0.14	-3.0
1,828,101	-		PFLU_RS30530	0.14	-0.5
1,828,101	-		PFLU_RS30530	0.14	-2.9
1,828,101	-		PFLU_RS30530	0.14	-0.6
1,828,106	+		PFLU_RS30530	0.15	-1.5
1,828,106	+		PFLU_RS30530	0.15	-1.5
1,828,107	-		PFLU_RS30530	0.15	-1.8
1,828,107	-		PFLU_RS30530	0.15	-2.9
1,828,119	-		PFLU_RS30530	0.17	-0.6
1,828,155	-		PFLU_RS30530	0.23	-0.6
1,828,187	+		PFLU_RS30530	0.27	-2.5
1,828,188	-		PFLU_RS30530	0.27	-2.0
1,828,227	-		PFLU_RS30530	0.33	-1.9
1,828,230	+		PFLU_RS30530	0.34	-1.6
1,828,230	+		PFLU_RS30530	0.34	-2.8
1,828,230	+		PFLU_RS30530	0.34	-1.4
1,828,230	+		PFLU_RS30530	0.34	-2.9
1,828,230	+		PFLU_RS30530	0.34	-1.0
1,828,230	+		PFLU_RS30530	0.34	-2.2
1,828,230	+		PFLU_RS30530	0.34	-1.8
1,828,230	+		PFLU_RS30530	0.34	-1.8
1,828,231	-		PFLU_RS30530	0.34	-3.2
1,828,231	-		PFLU_RS30530	0.34	-2.0
1,828,231	-		PFLU_RS30530	0.34	-1.3
1,828,231	-		PFLU_RS30530	0.34	-2.7
1,828,231	-		PFLU_RS30530	0.34	+0.1
1,828,231	-		PFLU_RS30530	0.34	-2.1
1,828,231	-		PFLU_RS30530	0.34	-2.3
1,828,231	-		PFLU_RS30530	0.34	-0.8
1,828,231	-		PFLU_RS30530	0.34	-3.2
1,828,231	-		PFLU_RS30530	0.34	-2.2
1,828,231	-		PFLU_RS30530	0.34	-0.3
1,828,231	-		PFLU_RS30530	0.34	-1.2
1,828,238	-		PFLU_RS30530	0.35	-1.2
1,828,426	+		PFLU_RS30530	0.63	-0.4
1,828,440	-		PFLU_RS30530	0.65	-1.8
1,828,476	-		PFLU_RS30530	0.71	-2.4
1,828,499	+		PFLU_RS30530	0.74	-2.5
1,828,499	+		PFLU_RS30530	0.74	-1.4
1,828,559	+		PFLU_RS30530	0.83	-2.8
1,828,560	-		PFLU_RS30530	0.83	-0.4
1,828,604	-				-2.0
1,828,604	-				-1.4
1,828,613	+				-1.2
1,828,700	+				-0.5
1,828,714	+				-2.0
1,828,725	-				+0.4
1,828,725	-				-0.4
1,828,771	+				-1.3
1,828,911	-		PFLU_RS08180	0.23	-0.7
1,828,915	+		PFLU_RS08180	0.24	+0.3
1,828,935	+		PFLU_RS08180	0.26	-1.7
1,828,935	+		PFLU_RS08180	0.26	-1.3
1,828,958	+		PFLU_RS08180	0.28	-2.1
1,828,959	-		PFLU_RS08180	0.28	-1.4
1,828,959	-		PFLU_RS08180	0.28	-2.4
1,828,986	-		PFLU_RS08180	0.31	-1.2
1,829,060	-		PFLU_RS08180	0.38	-0.8
1,829,086	+		PFLU_RS08180	0.41	-2.2
1,829,087	-		PFLU_RS08180	0.41	-1.2
1,829,111	+		PFLU_RS08180	0.43	-3.6
1,829,114	+		PFLU_RS08180	0.43	-2.4
1,829,118	+		PFLU_RS08180	0.44	-0.6
1,829,119	-		PFLU_RS08180	0.44	-0.7
1,829,148	-		PFLU_RS08180	0.47	-0.6
1,829,194	+		PFLU_RS08180	0.51	-3.0
1,829,194	+		PFLU_RS08180	0.51	-3.2
1,829,207	+		PFLU_RS08180	0.52	-2.4
1,829,339	+		PFLU_RS08180	0.65	-1.2
1,829,348	+		PFLU_RS08180	0.66	-0.8
1,829,475	-		PFLU_RS08180	0.79	-1.2
1,829,510	-		PFLU_RS08180	0.82	-1.3
1,829,564	-		PFLU_RS08180	0.88	+0.1
1,829,681	+				-2.6
1,829,724	+				+0.3
1,829,724	+				-0.2
1,829,725	-				+0.8
1,829,747	+				-2.0
1,829,807	+				-2.5
1,829,808	-				-1.7
1,829,819	+				-1.0
1,829,819	+				-2.7
1,829,829	+				-0.8
1,829,915	+		PFLU_RS08185	0.15	-1.4
1,829,933	-		PFLU_RS08185	0.16	-2.2
1,829,978	+		PFLU_RS08185	0.20	-3.1
1,830,011	+		PFLU_RS08185	0.23	-1.8
1,830,016	+		PFLU_RS08185	0.23	-1.8
1,830,016	+		PFLU_RS08185	0.23	-1.8
1,830,016	+		PFLU_RS08185	0.23	-2.5
1,830,037	+		PFLU_RS08185	0.25	-2.0
1,830,038	-		PFLU_RS08185	0.25	-1.4
1,830,038	-		PFLU_RS08185	0.25	-1.7
1,830,073	+		PFLU_RS08185	0.28	-1.6
1,830,074	-		PFLU_RS08185	0.28	-1.0
1,830,111	-		PFLU_RS08185	0.32	-0.0
1,830,111	-		PFLU_RS08185	0.32	-2.4
1,830,191	+		PFLU_RS08185	0.38	-1.5
1,830,227	+		PFLU_RS08185	0.41	-1.7
1,830,228	-		PFLU_RS08185	0.41	-2.2
1,830,228	-		PFLU_RS08185	0.41	-2.1
1,830,231	+		PFLU_RS08185	0.42	-2.8
1,830,231	+		PFLU_RS08185	0.42	-0.9
1,830,231	+		PFLU_RS08185	0.42	-0.5
1,830,231	+		PFLU_RS08185	0.42	-2.0
1,830,231	+		PFLU_RS08185	0.42	+0.8
1,830,231	+		PFLU_RS08185	0.42	-0.7
1,830,231	+		PFLU_RS08185	0.42	-1.3
1,830,231	+		PFLU_RS08185	0.42	-1.0
1,830,231	+		PFLU_RS08185	0.42	-1.9
1,830,231	+		PFLU_RS08185	0.42	-1.1
1,830,232	-		PFLU_RS08185	0.42	-1.7
1,830,232	-		PFLU_RS08185	0.42	-1.3
1,830,232	-		PFLU_RS08185	0.42	-1.4
1,830,232	-		PFLU_RS08185	0.42	-2.2
1,830,232	-		PFLU_RS08185	0.42	-2.9
1,830,232	-		PFLU_RS08185	0.42	-1.5
1,830,232	-		PFLU_RS08185	0.42	-2.3
1,830,232	-		PFLU_RS08185	0.42	-1.1
1,830,232	-		PFLU_RS08185	0.42	-2.8
1,830,232	-		PFLU_RS08185	0.42	-2.3
1,830,232	-		PFLU_RS08185	0.42	-3.6
1,830,248	-		PFLU_RS08185	0.43	-1.6
1,830,248	-		PFLU_RS08185	0.43	-2.5
1,830,290	+		PFLU_RS08185	0.47	+0.3
1,830,290	+		PFLU_RS08185	0.47	-0.9
1,830,291	-		PFLU_RS08185	0.47	-0.4
1,830,291	-		PFLU_RS08185	0.47	-2.1
1,830,291	-		PFLU_RS08185	0.47	-0.6
1,830,366	+		PFLU_RS08185	0.53	-0.7
1,830,366	+		PFLU_RS08185	0.53	-2.5
1,830,366	+		PFLU_RS08185	0.53	-0.9
1,830,366	+		PFLU_RS08185	0.53	-1.6
1,830,366	+		PFLU_RS08185	0.53	-3.2
1,830,366	+		PFLU_RS08185	0.53	-1.3
1,830,367	-		PFLU_RS08185	0.53	-2.7
1,830,367	-		PFLU_RS08185	0.53	-1.6
1,830,367	-		PFLU_RS08185	0.53	-3.3
1,830,367	-		PFLU_RS08185	0.53	-2.8
1,830,367	-		PFLU_RS08185	0.53	-3.1
1,830,367	-		PFLU_RS08185	0.53	-0.7
1,830,367	-		PFLU_RS08185	0.53	-1.7
1,830,368	+		PFLU_RS08185	0.53	-1.9
1,830,368	+		PFLU_RS08185	0.53	-0.8
1,830,368	+		PFLU_RS08185	0.53	-1.4
1,830,399	+		PFLU_RS08185	0.56	-2.0
1,830,400	-		PFLU_RS08185	0.56	-1.7
1,830,400	-		PFLU_RS08185	0.56	-1.3
1,830,400	-		PFLU_RS08185	0.56	+0.5
1,830,400	-		PFLU_RS08185	0.56	-1.7
1,830,484	+		PFLU_RS08185	0.63	-0.6
1,830,492	-		PFLU_RS08185	0.64	-1.9
1,830,506	+		PFLU_RS08185	0.65	-2.5
1,830,506	+		PFLU_RS08185	0.65	-2.0
1,830,506	+		PFLU_RS08185	0.65	-2.3
1,830,523	+		PFLU_RS08185	0.66	-1.1
1,830,524	-		PFLU_RS08185	0.67	-1.8
1,830,524	-		PFLU_RS08185	0.67	-1.8
1,830,602	+		PFLU_RS08185	0.73	-1.0