Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07665

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
1,703,629	+		PFLU_RS07655	0.61	-1.5
1,703,629	+		PFLU_RS07655	0.61	+0.4
1,703,765	+		PFLU_RS07655	0.73	-0.1
1,703,765	+		PFLU_RS07655	0.73	+0.1
1,703,765	+		PFLU_RS07655	0.73	-0.1
1,703,765	+		PFLU_RS07655	0.73	+0.0
1,703,766	-		PFLU_RS07655	0.73	+0.7
1,703,766	-		PFLU_RS07655	0.73	-1.5
1,703,766	-		PFLU_RS07655	0.73	+0.8
1,703,766	-		PFLU_RS07655	0.73	+0.2
1,703,766	-		PFLU_RS07655	0.73	+0.3
1,703,766	-		PFLU_RS07655	0.73	+0.9
1,703,974	+				+0.2
1,703,974	+				-0.5
1,703,974	+				-2.1
1,703,974	+				+0.2
1,703,974	+				-0.6
1,703,975	-				-0.7
1,703,975	-				+0.4
1,703,975	-				+0.6
1,703,975	-				+0.3
1,703,975	-				+0.3
1,704,083	+				+0.5
1,704,083	+				+0.2
1,704,083	+				-0.3
1,704,083	+				+0.2
1,704,083	+				-0.0
1,704,083	+				+1.1
1,704,083	+				+0.2
1,704,083	+				+1.0
1,704,083	+				+0.2
1,704,083	+				+0.6
1,704,083	+				-0.6
1,704,083	+				+0.2
1,704,083	+				+0.3
1,704,083	+				+0.6
1,704,083	+				+0.1
1,704,083	+				+1.5
1,704,084	-				+0.6
1,704,084	-				-1.8
1,704,084	-				+1.1
1,704,084	-				+0.7
1,704,084	-				-0.5
1,704,084	-				-0.3
1,704,084	-				+0.4
1,704,169	-				+0.3
1,704,204	+				+0.9
1,704,204	+				+0.6
1,704,205	-				-0.5
1,704,213	+		PFLU_RS07660	0.13	+0.0
1,704,213	+		PFLU_RS07660	0.13	+1.2
1,704,213	+		PFLU_RS07660	0.13	-0.5
1,704,213	+		PFLU_RS07660	0.13	-0.9
1,704,213	+		PFLU_RS07660	0.13	+1.5
1,704,213	+		PFLU_RS07660	0.13	+1.0
1,704,213	+		PFLU_RS07660	0.13	+1.1
1,704,213	+		PFLU_RS07660	0.13	+0.2
1,704,213	+		PFLU_RS07660	0.13	+0.1
1,704,213	+		PFLU_RS07660	0.13	+1.5
1,704,213	+		PFLU_RS07660	0.13	+0.1
1,704,213	+		PFLU_RS07660	0.13	+0.8
1,704,213	+		PFLU_RS07660	0.13	+1.2
1,704,213	+		PFLU_RS07660	0.13	+0.3
1,704,213	+		PFLU_RS07660	0.13	+0.6
1,704,213	+		PFLU_RS07660	0.13	+1.2
1,704,214	-		PFLU_RS07660	0.13	-0.7
1,704,214	-		PFLU_RS07660	0.13	-0.5
1,704,214	-		PFLU_RS07660	0.13	-0.5
1,704,214	-		PFLU_RS07660	0.13	-0.7
1,704,214	-		PFLU_RS07660	0.13	-1.2
1,704,214	-		PFLU_RS07660	0.13	-1.1
1,704,214	-		PFLU_RS07660	0.13	-1.5
1,704,214	-		PFLU_RS07660	0.13	-0.5
1,704,214	-		PFLU_RS07660	0.13	+0.7
1,704,215	+		PFLU_RS07660	0.14	+0.8
1,704,215	+		PFLU_RS07660	0.14	+0.8
1,704,215	+		PFLU_RS07660	0.14	+1.6
1,704,215	+		PFLU_RS07660	0.14	+0.2
1,704,215	+		PFLU_RS07660	0.14	-2.3
1,704,215	+		PFLU_RS07660	0.14	+0.0
1,704,215	+		PFLU_RS07660	0.14	+0.5
1,704,215	+		PFLU_RS07660	0.14	+0.4
1,704,215	+		PFLU_RS07660	0.14	+1.0
1,704,215	+		PFLU_RS07660	0.14	+0.7
1,704,215	+		PFLU_RS07660	0.14	+0.6
1,704,215	+		PFLU_RS07660	0.14	+0.3
1,704,215	+		PFLU_RS07660	0.14	+2.1
1,704,215	+		PFLU_RS07660	0.14	+0.4
1,704,215	+		PFLU_RS07660	0.14	+0.5
1,704,215	+		PFLU_RS07660	0.14	+0.2
1,704,215	+		PFLU_RS07660	0.14	+1.2
1,704,215	+		PFLU_RS07660	0.14	-0.0
1,704,215	+		PFLU_RS07660	0.14	+0.2
1,704,215	+		PFLU_RS07660	0.14	+0.6
1,704,215	+		PFLU_RS07660	0.14	-1.8
1,704,216	-		PFLU_RS07660	0.14	+0.7
1,704,216	-		PFLU_RS07660	0.14	+0.3
1,704,216	-		PFLU_RS07660	0.14	-0.0
1,704,216	-		PFLU_RS07660	0.14	-0.8
1,704,216	-		PFLU_RS07660	0.14	-0.3
1,704,216	-		PFLU_RS07660	0.14	-1.2
1,704,216	-		PFLU_RS07660	0.14	-0.6
1,704,216	-		PFLU_RS07660	0.14	-0.6
1,704,216	-		PFLU_RS07660	0.14	-0.6
1,704,216	-		PFLU_RS07660	0.14	-0.7
1,704,216	-		PFLU_RS07660	0.14	-0.8
1,704,282	+		PFLU_RS07660	0.42	+0.3
1,704,282	+		PFLU_RS07660	0.42	-0.6
1,704,282	+		PFLU_RS07660	0.42	+0.6
1,704,282	+		PFLU_RS07660	0.42	+0.7
1,704,282	+		PFLU_RS07660	0.42	+0.6
1,704,282	+		PFLU_RS07660	0.42	-0.4
1,704,282	+		PFLU_RS07660	0.42	+0.7
1,704,282	+		PFLU_RS07660	0.42	+0.4
1,704,283	-		PFLU_RS07660	0.42	-0.5
1,704,283	-		PFLU_RS07660	0.42	-0.7
1,704,283	-		PFLU_RS07660	0.42	-0.4
1,704,283	-		PFLU_RS07660	0.42	+0.2
1,704,283	-		PFLU_RS07660	0.42	-0.2
1,704,283	-		PFLU_RS07660	0.42	-1.1
1,704,283	-		PFLU_RS07660	0.42	-0.4
1,704,283	-		PFLU_RS07660	0.42	+0.4
1,704,294	+		PFLU_RS07660	0.47	+0.7
1,704,294	+		PFLU_RS07660	0.47	-1.3
1,704,294	+		PFLU_RS07660	0.47	-0.4
1,704,295	-		PFLU_RS07660	0.47	+0.3
1,704,295	-		PFLU_RS07660	0.47	-0.9
1,704,295	-		PFLU_RS07660	0.47	+0.3
1,704,303	+		PFLU_RS07660	0.51	-0.5
1,704,437	+				+1.4
1,704,437	+				-0.2
1,704,437	+				+0.4
1,704,438	-				-0.5
1,704,438	-				-0.5
1,704,466	+				+0.9
1,704,466	+				+1.4
1,704,466	+				-0.2
1,704,466	+				+0.1
1,704,466	+				+0.0
1,704,466	+				+0.4
1,704,466	+				+0.3
1,704,466	+				+1.4
1,704,466	+				-0.3
1,704,466	+				+0.5
1,704,467	-				+0.3
1,704,467	-				+0.6
1,704,468	+				+0.9
1,704,468	+				+1.1
1,704,468	+				+0.9
1,704,468	+				-0.3
1,704,468	+				-0.1
1,704,468	+				+0.4
1,704,468	+				+0.8
1,704,468	+				+0.3
1,704,468	+				+0.7
1,704,468	+				+0.4
1,704,468	+				-0.3
1,704,468	+				+1.1
1,704,468	+				+1.0
1,704,468	+				+0.8
1,704,468	+				+0.0
1,704,468	+				+1.0
1,704,468	+				+0.7
1,704,468	+				+1.0
1,704,468	+				+0.2
1,704,468	+				+0.8
1,704,468	+				-0.4
1,704,468	+				+1.8
1,704,468	+				+0.7
1,704,468	+				+2.3
1,704,468	+				+1.1
1,704,468	+				+1.3
1,704,468	+				-0.0
1,704,468	+				+1.5
1,704,468	+				-0.5
1,704,468	+				-0.2
1,704,468	+				-0.0
1,704,468	+				+0.4
1,704,468	+				-0.1
1,704,468	+				+0.8
1,704,468	+				-0.9
1,704,468	+				+0.2
1,704,468	+				-0.6
1,704,468	+				+0.5
1,704,468	+				+1.1
1,704,468	+				+2.0
1,704,468	+				-0.3
1,704,468	+				+0.6
1,704,468	+				+1.7
1,704,468	+				+0.6
1,704,468	+				+0.6
1,704,468	+				-0.1
1,704,468	+				-0.1
1,704,468	+				+0.1
1,704,468	+				+0.1
1,704,468	+				+0.8
1,704,468	+				+0.9
1,704,468	+				+1.0
1,704,468	+				+0.5
1,704,468	+				+0.7
1,704,468	+				+0.1
1,704,468	+				-0.0
1,704,468	+				-0.1
1,704,468	+				-0.4
1,704,468	+				-0.2
1,704,468	+				+1.0
1,704,468	+				+0.5
1,704,468	+				-0.3
1,704,468	+				+0.0
1,704,468	+				-0.7
1,704,468	+				+0.8
1,704,468	+				-2.0
1,704,468	+				+1.3
1,704,468	+				-0.5
1,704,468	+				-0.0
1,704,468	+				+0.2
1,704,468	+				+0.6
1,704,468	+				+0.9
1,704,468	+				+0.7
1,704,468	+				-0.6
1,704,470	+				+0.8
1,704,470	+				-0.1
1,704,470	+				+0.1
1,704,470	+				-0.2
1,704,470	+				+0.6
1,704,470	+				+0.9
1,704,470	+				+0.6
1,704,470	+				+0.6
1,704,470	+				-0.6
1,704,470	+				-1.3
1,704,470	+				+0.5
1,704,470	+				-0.0
1,704,470	+				+1.1
1,704,470	+				+0.1
1,704,470	+				+0.5
1,704,470	+				+0.3
1,704,470	+				+1.3
1,704,470	+				+0.2
1,704,470	+				+1.4
1,704,470	+				+0.1
1,704,470	+				+1.0
1,704,470	+				+0.2
1,704,470	+				-0.5
1,704,470	+				+0.4
1,704,470	+				+0.7
1,704,470	+				-0.1
1,704,470	+				+1.3
1,704,470	+				+0.9
1,704,470	+				+0.6
1,704,470	+				+0.3
1,704,470	+				+1.5
1,704,470	+				+0.5
1,704,470	+				-0.3
1,704,470	+				-0.3
1,704,470	+				-0.2
1,704,470	+				+1.3
1,704,470	+				+0.1
1,704,470	+				+0.6
1,704,470	+				-2.0
1,704,470	+				+1.4
1,704,470	+				-0.4
1,704,470	+				+1.1
1,704,472	+				+1.6
1,704,472	+				+1.0
1,704,472	+				-0.2
1,704,472	+				+0.8
1,704,472	+				+0.8
1,704,472	+				+0.3
1,704,472	+				+0.6
1,704,472	+				-0.6
1,704,472	+				-0.5
1,704,472	+				+0.9
1,704,472	+				+1.5
1,704,472	+				+0.4
1,704,472	+				-0.4
1,704,472	+				+0.9
1,706,798	+		PFLU_RS07665	0.86	-1.3
1,706,853	+		PFLU_RS07665	0.88	-0.7
1,706,853	+		PFLU_RS07665	0.88	-0.7
1,706,853	+		PFLU_RS07665	0.88	-1.1
1,706,853	+		PFLU_RS07665	0.88	+0.1
1,706,853	+		PFLU_RS07665	0.88	-0.3
1,706,853	+		PFLU_RS07665	0.88	-0.3
1,706,853	+		PFLU_RS07665	0.88	-0.4
1,706,854	-		PFLU_RS07665	0.88	-0.4
1,706,854	-		PFLU_RS07665	0.88	-0.4
1,706,854	-		PFLU_RS07665	0.88	-0.1
1,706,854	-		PFLU_RS07665	0.88	-0.3
1,706,854	-		PFLU_RS07665	0.88	-0.1
1,706,976	+				+0.6
1,707,060	+				-0.6
1,707,060	+				-0.1
1,707,061	-				-0.4
1,707,262	+				+0.2
1,707,274	+				+0.5
1,707,274	+				-0.7
1,707,274	+				+1.1
1,707,275	-				+0.1
1,707,288	+				+1.1
1,707,288	+				+0.4
1,707,288	+				-0.9
1,707,288	+				-0.0
1,707,288	+				-1.1
1,707,288	+				+1.0
1,707,288	+				-0.3
1,707,289	-				+1.1
1,707,289	-				+1.0
1,707,289	-				-0.9
1,707,331	+				-0.5
1,707,331	+				+0.0
1,707,369	+				+0.2
1,707,369	+				-1.1
1,707,369	+				+0.1
1,707,369	+				+0.4
1,707,369	+				-1.0
1,707,369	+				+0.1
1,707,369	+				-1.1
1,707,369	+				+0.5
1,707,369	+				+0.3
1,707,369	+				-0.3
1,707,369	+				+0.4
1,707,369	+				-0.8
1,707,370	-				+0.2
1,707,370	-				-0.1
1,707,370	-				-0.4
1,707,370	-				+0.1
1,707,370	-				-0.5
1,707,370	-				-0.1
1,707,370	-				+0.8
1,707,370	-				-0.4
1,707,370	-				+0.1
1,707,370	-				+0.1
1,707,370	-				-0.3
1,707,370	-				+0.6
1,707,370	-				-0.1
1,707,370	-				-0.8
1,707,371	+				-0.9
1,707,393	+				-0.8
1,707,501	+		PFLU_RS07670	0.28	+0.1
1,707,501	+		PFLU_RS07670	0.28	+1.2
1,707,501	+		PFLU_RS07670	0.28	-1.2
1,707,501	+		PFLU_RS07670	0.28	+0.5
1,707,501	+		PFLU_RS07670	0.28	-0.4
1,707,501	+		PFLU_RS07670	0.28	-0.0
1,707,501	+		PFLU_RS07670	0.28	+0.4
1,707,501	+		PFLU_RS07670	0.28	+0.3
1,707,501	+		PFLU_RS07670	0.28	+0.7
1,707,501	+		PFLU_RS07670	0.28	-0.5
1,707,501	+		PFLU_RS07670	0.28	+0.1
1,707,501	+		PFLU_RS07670	0.28	+0.4
1,707,502	-		PFLU_RS07670	0.28	+0.3
1,707,502	-		PFLU_RS07670	0.28	+0.2
1,707,502	-		PFLU_RS07670	0.28	-0.3
1,707,502	-		PFLU_RS07670	0.28	-0.1
1,707,502	-		PFLU_RS07670	0.28	-1.1
1,707,502	-		PFLU_RS07670	0.28	-1.3
1,707,502	-		PFLU_RS07670	0.28	-0.4
1,707,502	-		PFLU_RS07670	0.28	-0.1
1,707,502	-		PFLU_RS07670	0.28	-1.4
1,707,502	-		PFLU_RS07670	0.28	-0.0
1,707,502	-		PFLU_RS07670	0.28	-1.4
1,707,502	-		PFLU_RS07670	0.28	+0.5
1,707,502	-		PFLU_RS07670	0.28	+0.0
1,707,543	+		PFLU_RS07670	0.36	-0.7
1,707,543	+		PFLU_RS07670	0.36	-1.1
1,707,543	+		PFLU_RS07670	0.36	+0.7
1,707,544	-		PFLU_RS07670	0.36	-0.6
1,707,681	-		PFLU_RS07670	0.63	+0.1
1,707,681	-		PFLU_RS07670	0.63	-0.5
1,707,695	+		PFLU_RS07670	0.65	-0.5
1,707,696	-		PFLU_RS07670	0.66	+0.1
1,707,696	-		PFLU_RS07670	0.66	-0.0
1,707,862	+				-0.3
1,707,862	+				+0.7
1,707,862	+				+0.7
1,707,862	+				+1.9
1,707,893	-				-0.8
1,707,960	+				+0.7
1,707,960	+				-0.4
1,707,960	+				-0.2
1,707,960	+				-0.9
1,707,960	+				+1.0
1,707,960	+				+0.2
1,707,960	+				-0.3
1,707,960	+				-0.4
1,707,960	+				-0.2
1,707,960	+				+0.9
1,707,960	+				-0.1
1,707,960	+				+0.1
1,707,960	+				+0.7
1,707,960	+				+0.1
1,707,960	+				-0.4
1,707,961	-				+0.0
1,707,961	-				+1.2
1,707,961	-				-0.2
1,707,961	-				+0.6
1,707,961	-				-0.4
1,707,961	-				-0.0
1,707,961	-				-0.6
1,707,961	-				+0.2
1,707,961	-				-0.8
1,707,961	-				+0.1
1,707,961	-				-0.9
1,707,961	-				+1.1
1,707,961	-				-2.9
1,707,962	+				+0.7
1,707,962	+				+0.1
1,707,962	+				-0.8
1,707,962	+				-0.1
1,707,962	+				-1.1
1,707,962	+				+0.6
1,707,962	+				+0.9
1,707,962	+				-1.1
1,707,962	+				+0.2
1,707,962	+				+0.3
1,707,962	+				+1.0
1,707,962	+				-0.3
1,707,962	+				+0.2
1,707,963	-				-0.4
1,707,963	-				-1.4
1,707,963	-				-1.5
1,707,963	-				+0.7
1,707,993	+				+0.2
1,707,993	+				-0.6
1,707,993	+				-2.1
1,707,993	+				-0.5
1,707,994	-				+1.1
1,708,077	+		PFLU_RS07675	0.35	-0.5
1,708,078	-		PFLU_RS07675	0.36	-1.1