Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06815

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
1,526,380	+		PFLU_RS06810	0.49	+0.7
1,526,380	+		PFLU_RS06810	0.49	+0.3
1,526,380	+		PFLU_RS06810	0.49	-0.8
1,526,380	+		PFLU_RS06810	0.49	+0.2
1,526,381	-		PFLU_RS06810	0.49	-0.5
1,526,381	-		PFLU_RS06810	0.49	-1.0
1,526,381	-		PFLU_RS06810	0.49	+1.3
1,526,381	-		PFLU_RS06810	0.49	+0.0
1,526,381	-		PFLU_RS06810	0.49	+0.5
1,526,381	-		PFLU_RS06810	0.49	-0.9
1,526,501	-		PFLU_RS06810	0.59	-1.3
1,526,501	-		PFLU_RS06810	0.59	-1.1
1,526,569	+		PFLU_RS06810	0.65	-1.0
1,526,569	+		PFLU_RS06810	0.65	+0.4
1,526,569	+		PFLU_RS06810	0.65	+0.1
1,526,570	-		PFLU_RS06810	0.65	-0.1
1,526,570	-		PFLU_RS06810	0.65	+1.4
1,526,570	-		PFLU_RS06810	0.65	+0.2
1,526,570	-		PFLU_RS06810	0.65	+0.9
1,526,570	-		PFLU_RS06810	0.65	+0.7
1,526,570	-		PFLU_RS06810	0.65	-1.1
1,526,611	+		PFLU_RS06810	0.69	+0.7
1,526,611	+		PFLU_RS06810	0.69	+0.9
1,526,611	+		PFLU_RS06810	0.69	+0.4
1,526,612	-		PFLU_RS06810	0.69	+0.5
1,526,674	+		PFLU_RS06810	0.74	+1.8
1,526,674	+		PFLU_RS06810	0.74	-0.5
1,526,675	-		PFLU_RS06810	0.75	+0.7
1,526,675	-		PFLU_RS06810	0.75	+0.8
1,526,675	-		PFLU_RS06810	0.75	+0.6
1,526,675	-		PFLU_RS06810	0.75	+0.5
1,526,675	-		PFLU_RS06810	0.75	-0.1
1,526,696	-		PFLU_RS06810	0.76	+1.3
1,526,788	+		PFLU_RS06810	0.84	-0.5
1,526,788	+		PFLU_RS06810	0.84	+0.0
1,526,825	+		PFLU_RS06810	0.88	-2.0
1,526,843	+		PFLU_RS06810	0.89	-1.1
1,526,843	+		PFLU_RS06810	0.89	-0.2
1,526,843	+		PFLU_RS06810	0.89	+0.2
1,526,897	+				-1.1
1,526,898	-				+0.0
1,526,898	-				-0.1
1,526,957	+				-0.1
1,526,957	+				+0.0
1,526,957	+				+0.7
1,526,957	+				+0.7
1,526,957	+				+0.3
1,526,957	+				-0.3
1,526,957	+				+0.4
1,526,957	+				+0.8
1,526,958	-				+0.7
1,526,958	-				+0.4
1,526,958	-				+2.2
1,526,958	-				+0.9
1,526,958	-				+2.1
1,526,958	-				+0.8
1,527,039	+				+1.9
1,527,040	-				-2.0
1,527,040	-				-0.4
1,527,043	+				+0.1
1,527,043	+				+1.0
1,527,043	+				+0.2
1,527,043	+				-0.5
1,527,044	-				+0.2
1,527,044	-				-1.4
1,527,044	-				+0.1
1,527,044	-				-1.5
1,527,044	-				-0.8
1,527,044	-				-2.1
1,527,044	-				+0.1
1,527,044	-				-1.2
1,527,044	-				-0.2
1,527,044	-				-0.8
1,527,052	-				-0.1
1,527,059	-				-0.1
1,527,060	+				-0.4
1,527,060	+				+0.7
1,527,061	-				-0.4
1,527,061	-				-0.7
1,527,064	+				-0.8
1,527,064	+				+1.7
1,527,065	-				-1.4
1,527,065	-				-0.7
1,527,065	-				-0.1
1,527,065	-				-1.4
1,527,142	+				-0.8
1,527,143	-				-1.5
1,527,177	+				+0.8
1,527,178	-				-0.4
1,527,178	-				-0.1
1,527,178	-				-0.9
1,527,193	+				+0.4
1,527,193	+				+1.0
1,527,194	-				-1.3
1,527,199	+				-0.3
1,527,199	+				-1.1
1,527,199	+				+0.3
1,527,199	+				-0.6
1,527,200	-				-1.5
1,527,202	+				-0.4
1,527,202	+				-0.3
1,527,202	+				-1.4
1,527,203	-				-0.4
1,527,203	-				+0.4
1,527,203	-				-0.2
1,527,246	+				-0.6
1,527,246	+				+0.1
1,527,246	+				+0.4
1,527,247	-				-2.6
1,527,247	-				-2.1
1,527,247	-				-1.1
1,527,247	-				+1.2
1,527,247	-				-3.4
1,527,247	-				-0.4
1,527,247	-				-1.7
1,527,325	+		PFLU_RS06815	0.11	-2.3
1,527,325	+		PFLU_RS06815	0.11	-1.0
1,527,325	+		PFLU_RS06815	0.11	-1.3
1,527,325	+		PFLU_RS06815	0.11	-1.4
1,527,325	+		PFLU_RS06815	0.11	-0.3
1,527,325	+		PFLU_RS06815	0.11	-0.4
1,527,325	+		PFLU_RS06815	0.11	-0.6
1,527,325	+		PFLU_RS06815	0.11	-2.1
1,527,325	+		PFLU_RS06815	0.11	-0.9
1,527,326	-		PFLU_RS06815	0.12	-2.2
1,527,326	-		PFLU_RS06815	0.12	-0.4
1,527,326	-		PFLU_RS06815	0.12	-1.5
1,527,326	-		PFLU_RS06815	0.12	-2.5
1,527,326	-		PFLU_RS06815	0.12	-0.5
1,527,326	-		PFLU_RS06815	0.12	-1.4
1,527,326	-		PFLU_RS06815	0.12	-0.9
1,527,326	-		PFLU_RS06815	0.12	-0.5
1,527,326	-		PFLU_RS06815	0.12	-2.5
1,527,326	-		PFLU_RS06815	0.12	-0.2
1,527,326	-		PFLU_RS06815	0.12	-1.8
1,527,397	+		PFLU_RS06815	0.23	-0.1
1,527,397	+		PFLU_RS06815	0.23	-1.9
1,527,397	+		PFLU_RS06815	0.23	-0.9
1,527,397	+		PFLU_RS06815	0.23	-0.4
1,527,397	+		PFLU_RS06815	0.23	-1.8
1,527,397	+		PFLU_RS06815	0.23	-2.0
1,527,397	+		PFLU_RS06815	0.23	-2.9
1,527,397	+		PFLU_RS06815	0.23	-2.3
1,527,397	+		PFLU_RS06815	0.23	-1.6
1,527,397	+		PFLU_RS06815	0.23	-1.3
1,527,397	+		PFLU_RS06815	0.23	-1.4
1,527,398	-		PFLU_RS06815	0.23	-2.5
1,527,398	-		PFLU_RS06815	0.23	-0.2
1,527,398	-		PFLU_RS06815	0.23	-1.4
1,527,414	+		PFLU_RS06815	0.25	-2.5
1,527,414	+		PFLU_RS06815	0.25	-2.5
1,527,445	-		PFLU_RS06815	0.30	-0.2
1,527,597	+		PFLU_RS06815	0.54	-2.8
1,527,597	+		PFLU_RS06815	0.54	-2.3
1,527,597	+		PFLU_RS06815	0.54	-1.1
1,527,597	+		PFLU_RS06815	0.54	+0.5
1,527,597	+		PFLU_RS06815	0.54	-2.2
1,527,597	+		PFLU_RS06815	0.54	+0.0
1,527,597	+		PFLU_RS06815	0.54	-0.2
1,527,597	+		PFLU_RS06815	0.54	-0.4
1,527,597	+		PFLU_RS06815	0.54	-1.2
1,527,597	+		PFLU_RS06815	0.54	-0.9
1,527,598	-		PFLU_RS06815	0.55	-0.1
1,527,598	-		PFLU_RS06815	0.55	-2.6
1,527,598	-		PFLU_RS06815	0.55	-0.8
1,527,598	-		PFLU_RS06815	0.55	-1.4
1,527,598	-		PFLU_RS06815	0.55	-2.0
1,527,598	-		PFLU_RS06815	0.55	-2.3
1,527,598	-		PFLU_RS06815	0.55	-3.1
1,527,598	-		PFLU_RS06815	0.55	-2.0
1,527,598	-		PFLU_RS06815	0.55	-1.7
1,527,760	+		PFLU_RS06815	0.80	-0.2
1,527,760	+		PFLU_RS06815	0.80	-1.7
1,527,760	+		PFLU_RS06815	0.80	-1.8
1,527,760	+		PFLU_RS06815	0.80	+0.4
1,527,760	+		PFLU_RS06815	0.80	-2.4
1,527,761	-		PFLU_RS06815	0.80	-1.9
1,527,761	-		PFLU_RS06815	0.80	-1.9
1,527,761	-		PFLU_RS06815	0.80	-1.4
1,527,761	-		PFLU_RS06815	0.80	-0.5
1,527,812	+		PFLU_RS06815	0.88	-0.4
1,527,813	-		PFLU_RS06815	0.88	-1.6
1,527,813	-		PFLU_RS06815	0.88	-0.1
1,527,813	-		PFLU_RS06815	0.88	-1.9
1,527,813	-		PFLU_RS06815	0.88	-1.3
1,527,898	-				-0.4
1,527,922	+				-0.6
1,527,922	+				-0.4
1,527,923	-				-1.3
1,527,972	+				-0.8
1,527,972	+				+0.9
1,527,972	+				-0.7
1,527,972	+				-1.1
1,527,972	+				-0.1
1,527,972	+				+0.3
1,527,972	+				-0.8
1,527,972	+				-0.3
1,527,972	+				-0.3
1,527,972	+				+1.0
1,527,972	+				+0.1
1,527,972	+				-0.0
1,527,972	+				-0.3
1,527,972	+				-1.2
1,527,972	+				-0.9
1,527,972	+				+0.1
1,527,972	+				-1.0
1,527,972	+				-1.9
1,527,972	+				-0.1
1,527,972	+				+0.2
1,527,972	+				+0.6
1,527,972	+				-0.0
1,527,972	+				-0.6
1,527,972	+				+0.6
1,527,972	+				-0.4
1,527,972	+				-0.1
1,527,972	+				-0.7
1,527,973	-				-1.7
1,527,973	-				+0.3
1,527,973	-				-1.4
1,527,973	-				-0.1
1,527,973	-				+0.4
1,527,973	-				+0.2
1,527,973	-				-1.3
1,527,973	-				-0.1
1,527,973	-				-1.8
1,527,973	-				+0.5
1,527,973	-				-0.1
1,527,973	-				-0.9
1,527,973	-				+0.2
1,527,973	-				+0.8
1,527,973	-				+0.7
1,527,973	-				-0.6
1,527,973	-				-0.6
1,527,974	+				+0.5
1,527,974	+				-0.4
1,527,974	+				-0.2
1,527,974	+				-0.1
1,527,974	+				-0.2
1,527,974	+				+1.2
1,527,974	+				+0.5
1,527,974	+				-0.3
1,527,974	+				+0.5
1,527,975	-				-0.4
1,527,975	-				-1.1
1,527,975	-				-1.0
1,527,975	-				+0.5
1,527,975	-				-1.1
1,527,975	-				+1.1
1,527,975	-				+0.7
1,527,975	-				-0.6
1,527,975	-				+0.4
1,527,975	-				+0.9
1,527,976	+				-0.6
1,527,976	+				+0.5
1,527,976	+				-0.5
1,527,976	+				+0.7
1,527,977	-				-0.0
1,527,977	-				+0.8
1,527,977	-				+0.1
1,527,977	-				+0.2
1,527,977	-				+0.3
1,527,977	-				+0.6
1,527,997	+				-1.9
1,527,997	+				-0.7
1,527,997	+				-0.4
1,527,998	-				-1.4
1,527,998	-				+0.3
1,527,998	-				+0.1
1,527,998	-				+0.8
1,527,998	-				-0.4
1,527,998	-				-1.8
1,527,998	-				-0.3
1,527,998	-				-0.1
1,527,998	-				+0.0
1,527,998	-				-0.5
1,527,998	-				-0.2
1,527,998	-				+0.2
1,527,998	-				+0.8
1,527,998	-				-0.6
1,527,998	-				+0.3
1,527,998	-				-0.7
1,528,001	+				-0.4
1,528,001	+				+1.5
1,528,010	-				+0.6
1,528,013	+				-1.3
1,528,013	+				+0.6
1,528,014	-				-0.1
1,528,014	-				-0.0
1,528,115	+				+0.7
1,528,115	+				-0.5
1,528,115	+				+0.4
1,528,115	+				-0.5
1,528,115	+				+0.4
1,528,115	+				+0.0
1,528,115	+				+0.6
1,528,115	+				+0.6
1,528,115	+				+0.2
1,528,115	+				-0.5
1,528,115	+				+0.4
1,528,116	-				-1.0
1,528,116	-				-0.0
1,528,116	-				-2.4
1,528,116	-				+0.3
1,528,116	-				-0.2
1,528,116	-				-0.3
1,528,116	-				-0.6
1,528,116	-				-0.4
1,528,116	-				+0.1
1,528,116	-				-0.1
1,528,116	-				+0.3
1,528,116	-				+0.3
1,528,116	-				+0.2
1,528,116	-				+0.4
1,528,116	-				-1.7
1,528,116	-				-0.6
1,528,116	-				-2.1
1,528,116	-				-0.2
1,528,116	-				+0.4
1,528,149	-				-0.1
1,528,149	-				-0.6
1,528,149	-				-0.5
1,528,151	+				-0.8
1,528,151	+				-0.6
1,528,151	+				+0.0
1,528,152	-				-0.4
1,528,152	-				-0.2
1,528,181	-				-0.5
1,528,185	+				-0.2
1,528,185	+				-0.5
1,528,186	-				-0.3
1,528,186	-				-1.2
1,528,186	-				-0.2
1,528,200	+				+1.5
1,528,200	+				-0.6
1,528,200	+				-0.3
1,528,200	+				-0.4
1,528,201	-				-0.6
1,528,201	-				-0.2
1,528,201	-				-0.4
1,528,201	-				-0.9
1,528,201	-				-0.3
1,528,244	+				+0.6
1,528,244	+				+0.2
1,528,244	+				-0.6
1,528,244	+				-0.6
1,528,245	-				-0.7
1,528,245	-				-0.6
1,528,245	-				+0.3
1,528,245	-				-0.1
1,528,245	-				-0.7
1,528,272	+				+0.4
1,528,272	+				-0.2
1,528,272	+				+0.4
1,528,273	-				-0.9
1,528,275	+				-0.4
1,528,275	+				+0.2
1,528,275	+				-0.1
1,528,275	+				-0.8
1,528,276	-				+0.6
1,528,276	-				+0.3
1,528,310	+				-0.2
1,528,310	+				-0.6
1,528,345	-				-0.9
1,528,373	-				-0.1
1,528,373	-				+1.7
1,528,384	-				+0.8
1,528,388	+				-2.1
1,528,388	+				+0.4
1,528,389	-				-1.4
1,528,428	+				-1.3
1,528,456	-		PFLU_RS06820	0.11	+2.9
1,528,469	-		PFLU_RS06820	0.12	-0.6
1,528,469	-		PFLU_RS06820	0.12	+1.5
1,528,530	-		PFLU_RS06820	0.16	-0.1
1,528,603	+		PFLU_RS06820	0.21	-0.9
1,528,603	+		PFLU_RS06820	0.21	+0.2
1,528,604	-		PFLU_RS06820	0.22	-0.2
1,528,604	-		PFLU_RS06820	0.22	+0.8
1,528,604	-		PFLU_RS06820	0.22	+0.0
1,528,607	-		PFLU_RS06820	0.22	-0.1
1,528,607	-		PFLU_RS06820	0.22	+0.4
1,528,609	+		PFLU_RS06820	0.22	+0.6
1,528,609	+		PFLU_RS06820	0.22	-0.1
1,528,610	-		PFLU_RS06820	0.22	-1.5
1,528,669	+		PFLU_RS06820	0.26	-1.6
1,528,669	+		PFLU_RS06820	0.26	+0.5
1,528,669	+		PFLU_RS06820	0.26	+0.0
1,528,669	+		PFLU_RS06820	0.26	+1.2
1,528,670	-		PFLU_RS06820	0.26	+0.1
1,528,670	-		PFLU_RS06820	0.26	+1.4
1,528,670	-		PFLU_RS06820	0.26	-0.8
1,528,670	-		PFLU_RS06820	0.26	-1.6
1,528,670	-		PFLU_RS06820	0.26	-2.1
1,528,670	-		PFLU_RS06820	0.26	-1.1
1,528,692	+		PFLU_RS06820	0.28	+0.6
1,528,693	-		PFLU_RS06820	0.28	-0.8
1,528,786	-		PFLU_RS06820	0.35	+0.1
1,528,821	+		PFLU_RS06820	0.38	-0.2
1,528,821	+		PFLU_RS06820	0.38	+0.7
1,528,821	+		PFLU_RS06820	0.38	-0.0
1,528,822	-		PFLU_RS06820	0.38	+0.3