Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04470

Experiment: malate (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS
1,001,753	+		PFLU_RS04465	0.27	-2.9
1,001,753	+		PFLU_RS04465	0.27	-1.8
1,001,753	+		PFLU_RS04465	0.27	-3.3
1,001,753	+		PFLU_RS04465	0.27	-1.9
1,001,753	+		PFLU_RS04465	0.27	-0.2
1,001,753	+		PFLU_RS04465	0.27	-2.6
1,001,753	+		PFLU_RS04465	0.27	-1.5
1,001,754	-		PFLU_RS04465	0.27	-1.7
1,001,754	-		PFLU_RS04465	0.27	-1.1
1,001,754	-		PFLU_RS04465	0.27	-2.0
1,001,754	-		PFLU_RS04465	0.27	-4.1
1,001,754	-		PFLU_RS04465	0.27	-3.0
1,001,754	-		PFLU_RS04465	0.27	-2.7
1,001,754	-		PFLU_RS04465	0.27	-2.8
1,001,754	-		PFLU_RS04465	0.27	-1.6
1,001,828	+		PFLU_RS04465	0.39	-3.1
1,001,828	+		PFLU_RS04465	0.39	-2.6
1,001,828	+		PFLU_RS04465	0.39	-2.9
1,001,828	+		PFLU_RS04465	0.39	-2.4
1,001,829	-		PFLU_RS04465	0.39	-1.2
1,001,829	-		PFLU_RS04465	0.39	-2.7
1,001,829	-		PFLU_RS04465	0.39	-1.8
1,001,829	-		PFLU_RS04465	0.39	-2.5
1,001,829	-		PFLU_RS04465	0.39	-2.3
1,001,829	-		PFLU_RS04465	0.39	-1.9
1,001,829	-		PFLU_RS04465	0.39	-2.4
1,001,829	-		PFLU_RS04465	0.39	-3.5
1,001,829	-		PFLU_RS04465	0.39	-2.3
1,001,829	-		PFLU_RS04465	0.39	-2.8
1,001,829	-		PFLU_RS04465	0.39	-1.5
1,001,948	+		PFLU_RS04465	0.58	-2.2
1,001,949	-		PFLU_RS04465	0.58	-3.5
1,001,949	-		PFLU_RS04465	0.58	-2.3
1,001,951	+		PFLU_RS04465	0.58	-1.2
1,001,952	-		PFLU_RS04465	0.58	-2.8
1,001,952	-		PFLU_RS04465	0.58	-2.6
1,001,952	-		PFLU_RS04465	0.58	-1.4
1,001,980	+		PFLU_RS04465	0.63	-1.2
1,001,980	+		PFLU_RS04465	0.63	-1.7
1,001,981	-		PFLU_RS04465	0.63	-2.4
1,001,981	-		PFLU_RS04465	0.63	-2.6
1,001,981	-		PFLU_RS04465	0.63	-2.5
1,001,981	-		PFLU_RS04465	0.63	-0.4
1,001,991	-		PFLU_RS04465	0.64	-1.5
1,001,991	-		PFLU_RS04465	0.64	-3.1
1,002,220	+				-1.4
1,002,220	+				-0.8
1,002,221	-				-0.0
1,002,221	-				-0.7
1,002,221	-				+1.4
1,002,221	-				-0.4
1,002,221	-				+0.3
1,002,228	+				-0.7
1,002,228	+				-0.6
1,002,228	+				+0.2
1,002,228	+				+0.9
1,002,229	-				+0.0
1,002,229	-				-0.1
1,002,229	-				+0.1
1,002,229	-				+0.4
1,002,241	-				+0.4
1,002,251	-				+0.4
1,002,261	+				-0.2
1,002,338	-				-0.6
1,002,354	+				+0.1
1,002,354	+				+1.1
1,002,354	+				+0.7
1,002,354	+				+0.6
1,002,354	+				-0.9
1,002,354	+				-1.0
1,002,354	+				-0.1
1,002,354	+				+0.4
1,002,354	+				+1.5
1,002,354	+				-0.0
1,002,354	+				-2.3
1,002,354	+				-0.0
1,002,354	+				-0.2
1,002,354	+				-1.9
1,002,354	+				+0.4
1,002,354	+				-1.5
1,002,354	+				-0.9
1,002,354	+				-0.3
1,002,354	+				-0.4
1,002,354	+				-0.3
1,002,354	+				+0.8
1,002,354	+				+0.2
1,002,354	+				+0.5
1,002,354	+				-1.3
1,002,354	+				+1.4
1,002,354	+				-0.4
1,002,354	+				-1.7
1,002,354	+				+0.0
1,002,354	+				+0.1
1,002,354	+				-0.7
1,002,354	+				-0.4
1,002,354	+				+1.5
1,002,354	+				+0.4
1,002,354	+				+0.7
1,002,354	+				-0.7
1,002,354	+				+0.1
1,002,354	+				-0.6
1,002,354	+				+0.3
1,002,354	+				-2.2
1,002,354	+				+0.3
1,002,354	+				-0.5
1,002,354	+				-0.3
1,002,354	+				-1.0
1,002,354	+				+0.7
1,002,354	+				-0.5
1,002,354	+				-0.1
1,002,354	+				+0.4
1,002,354	+				-0.6
1,002,355	-				+0.3
1,002,355	-				-1.4
1,002,355	-				-0.0
1,002,355	-				+1.7
1,002,355	-				-1.0
1,002,355	-				+0.4
1,002,355	-				-0.9
1,002,355	-				+0.4
1,002,355	-				-0.0
1,002,355	-				-0.2
1,002,355	-				+0.1
1,002,355	-				-0.5
1,002,355	-				+0.9
1,002,355	-				-0.4
1,002,355	-				-1.0
1,002,355	-				-0.5
1,002,355	-				+0.8
1,002,355	-				-0.8
1,002,355	-				+0.1
1,002,355	-				-0.3
1,002,355	-				-1.4
1,002,355	-				+1.1
1,002,355	-				-0.6
1,002,355	-				+0.4
1,002,355	-				-0.7
1,002,355	-				+0.3
1,002,355	-				+1.6
1,002,355	-				-0.2
1,002,355	-				-1.4
1,002,355	-				+0.9
1,002,355	-				+0.5
1,002,355	-				+1.4
1,002,355	-				-0.1
1,002,355	-				-1.2
1,002,355	-				-0.2
1,002,355	-				-1.6
1,002,355	-				+1.7
1,002,355	-				-1.3
1,002,355	-				+0.5
1,002,355	-				+0.1
1,002,355	-				-1.6
1,002,355	-				-0.0
1,002,355	-				+0.8
1,002,359	+				+0.7
1,002,359	+				+0.9
1,002,359	+				+0.5
1,002,359	+				-0.9
1,002,359	+				-0.5
1,002,360	-				+0.3
1,002,360	-				-0.9
1,002,360	-				+0.2
1,002,360	-				-1.0
1,002,360	-				+0.4
1,002,362	+				+1.9
1,002,362	+				+0.8
1,002,362	+				+0.4
1,002,362	+				-0.8
1,002,362	+				+0.7
1,002,362	+				+0.2
1,002,362	+				+0.5
1,002,362	+				-0.9
1,002,363	-				+0.4
1,002,363	-				-0.0
1,002,363	-				-0.2
1,002,363	-				+0.6
1,002,363	-				-0.2
1,002,363	-				-0.2
1,002,363	-				-0.2
1,002,380	+				-0.0
1,002,381	-				+0.6
1,002,385	-				-0.4
1,002,385	-				+0.6
1,002,385	-				-0.0
1,002,395	-				+0.5
1,002,465	+				-0.8
1,002,466	-				+0.4
1,002,474	+				+1.1
1,002,474	+				-0.1
1,002,474	+				-0.1
1,002,474	+				+0.2
1,002,474	+				-0.1
1,002,474	+				-0.6
1,002,474	+				+1.0
1,002,474	+				-0.6
1,002,474	+				+0.9
1,002,474	+				+0.8
1,002,475	-				+1.0
1,002,475	-				+1.4
1,002,475	-				+0.1
1,002,475	-				+0.3
1,002,475	-				+0.4
1,002,475	-				+0.6
1,002,480	+				+1.3
1,002,481	-				-1.4
1,002,514	+				+0.3
1,002,514	+				+0.2
1,002,515	-				+0.0
1,002,515	-				-0.9
1,002,515	-				-1.0
1,002,515	-				-0.4
1,002,531	-				-0.2
1,002,576	+				-0.8
1,002,576	+				+0.4
1,002,576	+				-0.1
1,002,576	+				+0.2
1,002,576	+				+1.5
1,002,576	+				-0.4
1,002,577	-				-0.2
1,002,577	-				-0.1
1,002,577	-				-0.2
1,002,577	-				-0.2
1,002,901	+		PFLU_RS04470	0.23	-2.8
1,002,902	-		PFLU_RS04470	0.23	-2.0
1,002,935	-		PFLU_RS04470	0.26	-1.2
1,002,935	-		PFLU_RS04470	0.26	-0.8
1,002,935	-		PFLU_RS04470	0.26	-2.2
1,002,935	-		PFLU_RS04470	0.26	-1.8
1,002,997	+		PFLU_RS04470	0.31	-0.2
1,002,997	+		PFLU_RS04470	0.31	-1.3
1,002,997	+		PFLU_RS04470	0.31	-1.2
1,002,997	+		PFLU_RS04470	0.31	-2.9
1,002,997	+		PFLU_RS04470	0.31	-2.6
1,002,997	+		PFLU_RS04470	0.31	-2.8
1,002,997	+		PFLU_RS04470	0.31	-1.1
1,002,997	+		PFLU_RS04470	0.31	-3.0
1,002,997	+		PFLU_RS04470	0.31	-3.7
1,002,997	+		PFLU_RS04470	0.31	-2.8
1,002,998	-		PFLU_RS04470	0.31	-2.1
1,002,998	-		PFLU_RS04470	0.31	-2.1
1,002,998	-		PFLU_RS04470	0.31	-0.7
1,002,998	-		PFLU_RS04470	0.31	-2.2
1,002,998	-		PFLU_RS04470	0.31	-2.3
1,003,022	-		PFLU_RS04470	0.33	-3.1
1,003,201	+		PFLU_RS04470	0.46	-2.3
1,003,201	+		PFLU_RS04470	0.46	-1.9
1,003,202	-		PFLU_RS04470	0.46	-1.7
1,003,202	-		PFLU_RS04470	0.46	-3.0
1,003,202	-		PFLU_RS04470	0.46	-3.8
1,003,230	+		PFLU_RS04470	0.48	-2.1
1,003,255	+		PFLU_RS04470	0.50	-3.2
1,003,255	+		PFLU_RS04470	0.50	-1.2
1,003,255	+		PFLU_RS04470	0.50	-2.5
1,003,255	+		PFLU_RS04470	0.50	-3.2
1,003,255	+		PFLU_RS04470	0.50	-2.3
1,003,255	+		PFLU_RS04470	0.50	-0.4
1,003,255	+		PFLU_RS04470	0.50	-2.3
1,003,255	+		PFLU_RS04470	0.50	-2.7
1,003,255	+		PFLU_RS04470	0.50	-2.3
1,003,255	+		PFLU_RS04470	0.50	-2.3
1,003,255	+		PFLU_RS04470	0.50	-0.9
1,003,255	+		PFLU_RS04470	0.50	-1.6
1,003,255	+		PFLU_RS04470	0.50	-2.7
1,003,255	+		PFLU_RS04470	0.50	-2.7
1,003,255	+		PFLU_RS04470	0.50	-2.0
1,003,255	+		PFLU_RS04470	0.50	-1.9
1,003,255	+		PFLU_RS04470	0.50	-1.7
1,003,255	+		PFLU_RS04470	0.50	-1.2
1,003,255	+		PFLU_RS04470	0.50	-2.4
1,003,255	+		PFLU_RS04470	0.50	-3.3
1,003,255	+		PFLU_RS04470	0.50	-2.0
1,003,255	+		PFLU_RS04470	0.50	-2.7
1,003,256	-		PFLU_RS04470	0.50	-2.0
1,003,256	-		PFLU_RS04470	0.50	-2.7
1,003,256	-		PFLU_RS04470	0.50	-3.0
1,003,256	-		PFLU_RS04470	0.50	-1.3
1,003,256	-		PFLU_RS04470	0.50	-3.2
1,003,256	-		PFLU_RS04470	0.50	-1.2
1,003,256	-		PFLU_RS04470	0.50	-3.2
1,003,256	-		PFLU_RS04470	0.50	-1.9
1,003,256	-		PFLU_RS04470	0.50	-1.8
1,003,256	-		PFLU_RS04470	0.50	-3.6
1,003,256	-		PFLU_RS04470	0.50	-2.3
1,003,256	-		PFLU_RS04470	0.50	-2.6
1,003,256	-		PFLU_RS04470	0.50	-0.2
1,003,256	-		PFLU_RS04470	0.50	-1.3
1,003,256	-		PFLU_RS04470	0.50	-3.0
1,003,334	+		PFLU_RS04470	0.56	-1.0
1,003,335	-		PFLU_RS04470	0.56	-2.9
1,003,467	+		PFLU_RS04470	0.66	-2.4
1,003,467	+		PFLU_RS04470	0.66	-2.6
1,003,467	+		PFLU_RS04470	0.66	-2.7
1,003,467	+		PFLU_RS04470	0.66	-2.7
1,003,467	+		PFLU_RS04470	0.66	-1.1
1,003,468	-		PFLU_RS04470	0.66	-1.7
1,003,693	+		PFLU_RS04470	0.83	+0.7
1,003,693	+		PFLU_RS04470	0.83	-1.4
1,003,693	+		PFLU_RS04470	0.83	-2.9
1,003,694	-		PFLU_RS04470	0.83	-1.9
1,003,694	-		PFLU_RS04470	0.83	-1.4
1,003,694	-		PFLU_RS04470	0.83	-2.4
1,003,762	+		PFLU_RS04470	0.88	-0.8
1,003,762	+		PFLU_RS04470	0.88	-2.7
1,003,762	+		PFLU_RS04470	0.88	-2.2
1,003,762	+		PFLU_RS04470	0.88	-1.6
1,003,762	+		PFLU_RS04470	0.88	-2.7
1,003,762	+		PFLU_RS04470	0.88	+0.4
1,003,762	+		PFLU_RS04470	0.88	-3.0
1,003,763	-		PFLU_RS04470	0.89	-1.9
1,003,763	-		PFLU_RS04470	0.89	+1.0
1,003,763	-		PFLU_RS04470	0.89	-0.3
1,003,763	-		PFLU_RS04470	0.89	-3.4
1,003,763	-		PFLU_RS04470	0.89	-2.9
1,003,763	-		PFLU_RS04470	0.89	-3.5
1,003,763	-		PFLU_RS04470	0.89	-3.3
1,003,886	-				-2.4
1,003,886	-				-1.9
1,003,924	-				+0.2
1,003,960	+				-0.8
1,003,960	+				-1.1
1,003,960	+				+0.5
1,003,960	+				+0.7
1,003,960	+				+0.5
1,003,960	+				-1.7
1,003,960	+				+1.1
1,003,960	+				-1.7
1,003,960	+				-0.2
1,003,960	+				-0.3
1,003,960	+				-1.1
1,003,961	-				-0.4
1,003,961	-				+1.3
1,003,961	-				+0.6
1,003,961	-				-1.2
1,003,961	-				-0.2
1,003,961	-				+0.6
1,003,961	-				+0.8
1,003,961	-				-0.9
1,003,961	-				+1.1
1,003,961	-				+0.0
1,003,961	-				-0.2
1,003,961	-				-0.6
1,003,961	-				+0.4
1,003,961	-				-0.2
1,003,961	-				+0.3
1,003,965	-				+0.7
1,004,131	+		PFLU_RS04475	0.20	+0.6
1,004,131	+		PFLU_RS04475	0.20	+0.5
1,004,131	+		PFLU_RS04475	0.20	-0.3
1,004,131	+		PFLU_RS04475	0.20	-0.8
1,004,131	+		PFLU_RS04475	0.20	-0.3
1,004,131	+		PFLU_RS04475	0.20	-0.1
1,004,131	+		PFLU_RS04475	0.20	-0.8
1,004,131	+		PFLU_RS04475	0.20	-0.5
1,004,131	+		PFLU_RS04475	0.20	-1.1
1,004,132	-		PFLU_RS04475	0.20	-2.5
1,004,132	-		PFLU_RS04475	0.20	+0.4
1,004,132	-		PFLU_RS04475	0.20	+0.8
1,004,132	-		PFLU_RS04475	0.20	+0.3
1,004,132	-		PFLU_RS04475	0.20	-0.6
1,004,132	-		PFLU_RS04475	0.20	-1.6
1,004,132	-		PFLU_RS04475	0.20	-0.6
1,004,132	-		PFLU_RS04475	0.20	-0.8
1,004,132	-		PFLU_RS04475	0.20	-0.3
1,004,132	-		PFLU_RS04475	0.20	-0.6
1,004,132	-		PFLU_RS04475	0.20	-0.3
1,004,132	-		PFLU_RS04475	0.20	-0.6
1,004,135	-		PFLU_RS04475	0.21	+1.0
1,004,248	+		PFLU_RS04475	0.31	+0.2
1,004,248	+		PFLU_RS04475	0.31	-0.7
1,004,248	+		PFLU_RS04475	0.31	+0.9
1,004,249	-		PFLU_RS04475	0.31	-0.7
1,004,278	+		PFLU_RS04475	0.34	-0.7
1,004,278	+		PFLU_RS04475	0.34	-0.6
1,004,278	+		PFLU_RS04475	0.34	-0.5
1,004,278	+		PFLU_RS04475	0.34	-0.7
1,004,338	+		PFLU_RS04475	0.40	+0.2
1,004,338	+		PFLU_RS04475	0.40	-1.9
1,004,339	-		PFLU_RS04475	0.40	+0.0
1,004,339	-		PFLU_RS04475	0.40	-2.9
1,004,339	-		PFLU_RS04475	0.40	-1.9
1,004,467	+		PFLU_RS04475	0.52	-1.0
1,004,467	+		PFLU_RS04475	0.52	+0.8
1,004,467	+		PFLU_RS04475	0.52	-0.9
1,004,467	+		PFLU_RS04475	0.52	+0.2
1,004,467	+		PFLU_RS04475	0.52	+0.4
1,004,467	+		PFLU_RS04475	0.52	-0.4
1,004,467	+		PFLU_RS04475	0.52	-1.6
1,004,467	+		PFLU_RS04475	0.52	+0.4
1,004,467	+		PFLU_RS04475	0.52	-0.2
1,004,467	+		PFLU_RS04475	0.52	+0.7
1,004,467	+		PFLU_RS04475	0.52	+0.2
1,004,467	+		PFLU_RS04475	0.52	-1.8
1,004,467	+		PFLU_RS04475	0.52	+0.5
1,004,467	+		PFLU_RS04475	0.52	-1.0
1,004,467	+		PFLU_RS04475	0.52	-0.7
1,004,467	+		PFLU_RS04475	0.52	-0.3
1,004,467	+		PFLU_RS04475	0.52	+0.5
1,004,467	+		PFLU_RS04475	0.52	+1.0
1,004,467	+		PFLU_RS04475	0.52	-0.2
1,004,468	-		PFLU_RS04475	0.52	+0.3
1,004,468	-		PFLU_RS04475	0.52	+0.3
1,004,468	-		PFLU_RS04475	0.52	+0.2
1,004,468	-		PFLU_RS04475	0.52	-0.5
1,004,468	-		PFLU_RS04475	0.52	-0.3
1,004,468	-		PFLU_RS04475	0.52	-0.2
1,004,468	-		PFLU_RS04475	0.52	-0.7
1,004,468	-		PFLU_RS04475	0.52	-0.3
1,004,468	-		PFLU_RS04475	0.52	+0.6
1,004,468	-		PFLU_RS04475	0.52	+0.6
1,004,468	-		PFLU_RS04475	0.52	+1.8
1,004,468	-		PFLU_RS04475	0.52	+0.2
1,004,504	+		PFLU_RS04475	0.56	+0.1
1,004,504	+		PFLU_RS04475	0.56	+0.1
1,004,505	-		PFLU_RS04475	0.56	+0.4
1,004,641	+		PFLU_RS04475	0.69	-0.8
1,004,698	+		PFLU_RS04475	0.74	-0.4
1,004,698	+		PFLU_RS04475	0.74	+0.5
1,004,699	-		PFLU_RS04475	0.74	-0.0
1,004,870	+				+0.7
1,004,870	+				+0.2