Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04115

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04105 and BWI76_RS04110 are separated by 123 nucleotidesBWI76_RS04110 and BWI76_RS04115 are separated by 120 nucleotidesBWI76_RS04115 and BWI76_RS04120 overlap by 4 nucleotidesBWI76_RS04120 and BWI76_RS04125 are separated by 145 nucleotides BWI76_RS04105: BWI76_RS04105 - molecular chaperone OsmY, at 844,864 to 845,475 _RS04105 BWI76_RS04110: BWI76_RS04110 - DUF1328 domain-containing protein, at 845,599 to 845,760 _RS04110 BWI76_RS04115: BWI76_RS04115 - patatin family protein, at 845,881 to 846,954 _RS04115 BWI76_RS04120: BWI76_RS04120 - metal-dependent hydrolase, at 846,951 to 847,730 _RS04120 BWI76_RS04125: BWI76_RS04125 - NupC/NupG family nucleoside CNT transporter, at 847,876 to 849,153 _RS04125 Position (kb) 845 846 847Strain fitness (log2 ratio) -2 -1 0 1 2at 844.899 kb on - strandat 844.923 kb on - strandat 844.951 kb on + strand, within BWI76_RS04105at 844.951 kb on + strand, within BWI76_RS04105at 844.951 kb on + strand, within BWI76_RS04105at 844.959 kb on - strand, within BWI76_RS04105at 845.063 kb on - strand, within BWI76_RS04105at 845.063 kb on - strand, within BWI76_RS04105at 845.097 kb on + strand, within BWI76_RS04105at 845.133 kb on - strand, within BWI76_RS04105at 845.141 kb on + strand, within BWI76_RS04105at 845.259 kb on + strand, within BWI76_RS04105at 845.368 kb on - strand, within BWI76_RS04105at 845.385 kb on - strand, within BWI76_RS04105at 845.409 kb on + strand, within BWI76_RS04105at 845.436 kb on - strandat 845.527 kb on + strandat 845.527 kb on + strandat 845.527 kb on + strandat 845.527 kb on - strandat 845.535 kb on - strandat 845.535 kb on - strandat 845.540 kb on - strandat 845.582 kb on + strandat 845.589 kb on + strandat 845.590 kb on - strandat 845.647 kb on + strand, within BWI76_RS04110at 845.655 kb on - strand, within BWI76_RS04110at 845.657 kb on + strand, within BWI76_RS04110at 845.667 kb on + strand, within BWI76_RS04110at 845.687 kb on - strand, within BWI76_RS04110at 845.711 kb on + strand, within BWI76_RS04110at 845.763 kb on - strandat 845.907 kb on + strandat 845.912 kb on + strandat 845.951 kb on + strandat 845.959 kb on - strandat 845.959 kb on - strandat 845.964 kb on - strandat 845.971 kb on + strandat 845.980 kb on - strandat 846.420 kb on - strand, within BWI76_RS04115at 846.514 kb on + strand, within BWI76_RS04115at 846.519 kb on + strand, within BWI76_RS04115at 846.521 kb on + strand, within BWI76_RS04115at 846.527 kb on - strand, within BWI76_RS04115at 846.633 kb on - strand, within BWI76_RS04115at 846.711 kb on - strand, within BWI76_RS04115at 846.711 kb on - strand, within BWI76_RS04115at 846.746 kb on - strand, within BWI76_RS04115at 847.035 kb on + strand, within BWI76_RS04120at 847.188 kb on - strand, within BWI76_RS04120at 847.211 kb on + strand, within BWI76_RS04120at 847.559 kb on + strand, within BWI76_RS04120at 847.575 kb on - strand, within BWI76_RS04120at 847.615 kb on + strand, within BWI76_RS04120at 847.615 kb on + strandat 847.840 kb on + strandat 847.840 kb on + strandat 847.840 kb on + strandat 847.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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844,899 - -1.4
844,923 - -0.4
844,951 + BWI76_RS04105 0.14 +0.2
844,951 + BWI76_RS04105 0.14 -1.1
844,951 + BWI76_RS04105 0.14 +0.8
844,959 - BWI76_RS04105 0.16 -0.5
845,063 - BWI76_RS04105 0.33 -0.3
845,063 - BWI76_RS04105 0.33 -0.4
845,097 + BWI76_RS04105 0.38 +0.2
845,133 - BWI76_RS04105 0.44 +0.4
845,141 + BWI76_RS04105 0.45 -0.3
845,259 + BWI76_RS04105 0.65 +1.2
845,368 - BWI76_RS04105 0.82 +1.2
845,385 - BWI76_RS04105 0.85 -0.3
845,409 + BWI76_RS04105 0.89 +1.2
845,436 - -0.6
845,527 + +0.1
845,527 + +1.5
845,527 + -1.0
845,527 - +0.3
845,535 - +0.4
845,535 - +0.4
845,540 - -1.9
845,582 + +0.1
845,589 + -1.1
845,590 - -0.8
845,647 + BWI76_RS04110 0.30 +0.5
845,655 - BWI76_RS04110 0.35 +0.7
845,657 + BWI76_RS04110 0.36 +0.2
845,667 + BWI76_RS04110 0.42 +0.1
845,687 - BWI76_RS04110 0.54 +1.2
845,711 + BWI76_RS04110 0.69 +0.2
845,763 - +1.1
845,907 + -0.0
845,912 + +0.6
845,951 + +1.0
845,959 - -0.3
845,959 - +0.2
845,964 - +0.4
845,971 + +0.8
845,980 - +2.1
846,420 - BWI76_RS04115 0.50 +0.9
846,514 + BWI76_RS04115 0.59 +0.5
846,519 + BWI76_RS04115 0.59 +1.8
846,521 + BWI76_RS04115 0.60 -0.1
846,527 - BWI76_RS04115 0.60 +2.0
846,633 - BWI76_RS04115 0.70 -2.5
846,711 - BWI76_RS04115 0.77 +0.8
846,711 - BWI76_RS04115 0.77 +1.2
846,746 - BWI76_RS04115 0.81 +0.5
847,035 + BWI76_RS04120 0.11 -0.0
847,188 - BWI76_RS04120 0.30 -0.9
847,211 + BWI76_RS04120 0.33 +1.3
847,559 + BWI76_RS04120 0.78 +1.2
847,575 - BWI76_RS04120 0.80 +0.1
847,615 + BWI76_RS04120 0.85 +0.1
847,615 + +1.8
847,840 + -0.8
847,840 + +0.2
847,840 + -1.5
847,848 - -0.3

Or see this region's nucleotide sequence