Strain Fitness in Shewanella oneidensis MR-1 around SO1434

Experiment: Ferric citrate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor
1,494,731	-		SO1431	0.43	+0.1
1,494,738	+		SO1431	0.44	+0.4
1,494,738	+		SO1431	0.44	-1.4
1,494,738	+		SO1431	0.44	+0.4
1,494,738	+		SO1431	0.44	-1.2
1,494,738	+		SO1431	0.44	+0.0
1,494,746	-		SO1431	0.45	-1.8
1,494,746	-		SO1431	0.45	+0.9
1,494,746	-		SO1431	0.45	+1.1
1,494,746	-		SO1431	0.45	-1.8
1,494,746	-		SO1431	0.45	-0.4
1,494,746	-		SO1431	0.45	-2.9
1,494,746	-		SO1431	0.45	+0.2
1,494,746	-		SO1431	0.45	+1.1
1,494,746	-		SO1431	0.45	-0.0
1,494,746	-		SO1431	0.45	-0.4
1,494,746	-		SO1431	0.45	-0.4
1,494,746	-		SO1431	0.45	+0.2
1,494,763	-		SO1431	0.48	-0.5
1,494,831	-		SO1431	0.58	-0.1
1,494,841	-		SO1431	0.60	+1.1
1,494,841	-		SO1431	0.60	+0.5
1,494,848	-		SO1431	0.61	+0.4
1,494,918	+		SO1431	0.71	+0.4
1,494,922	+		SO1431	0.72	-0.4
1,494,922	+		SO1431	0.72	+1.5
1,494,923	+		SO1431	0.72	-1.0
1,494,930	-		SO1431	0.73	-0.5
1,494,930	-		SO1431	0.73	-0.2
1,494,931	-		SO1431	0.73	-1.6
1,494,939	+		SO1431	0.74	-1.5
1,494,951	-		SO1431	0.76	-0.1
1,494,979	+		SO1431	0.80	-0.9
1,494,979	+		SO1431	0.80	-0.5
1,494,979	+		SO1431	0.80	+1.2
1,494,987	-		SO1431	0.82	-0.1
1,494,987	-		SO1431	0.82	+0.4
1,494,987	-		SO1431	0.82	+0.6
1,494,987	-		SO1431	0.82	-1.1
1,495,028	+		SO1431	0.88	+0.5
1,495,038	+		SO1431	0.89	+0.4
1,495,046	-				-0.7
1,495,051	-				-1.8
1,495,082	+				-1.4
1,495,083	+				-0.3
1,495,090	-				+0.5
1,495,104	+				+1.0
1,495,116	+				+0.8
1,495,117	+				-0.6
1,495,117	+				+0.5
1,495,118	-				+0.0
1,495,119	+				-0.4
1,495,119	-				+0.4
1,495,124	-				-2.3
1,495,125	-				-1.0
1,495,133	-				+0.4
1,495,136	-				-1.2
1,495,143	-				-1.9
1,495,143	-				+2.4
1,495,151	+				+3.8
1,495,160	-				+1.9
1,495,193	-		SO1432	0.16	-1.4
1,495,242	-		SO1432	0.26	-0.5
1,495,282	+		SO1432	0.35	+2.5
1,495,295	+		SO1432	0.37	+0.5
1,495,300	+		SO1432	0.38	+0.3
1,495,300	+		SO1432	0.38	-0.7
1,495,308	-		SO1432	0.40	-3.2
1,495,322	+		SO1432	0.43	+2.3
1,495,322	+		SO1432	0.43	-0.6
1,495,322	+		SO1432	0.43	-0.6
1,495,330	-		SO1432	0.45	-0.4
1,495,330	-		SO1432	0.45	-0.3
1,495,367	+		SO1432	0.53	+1.1
1,495,376	-		SO1432	0.55	-2.5
1,495,480	-		SO1432	0.77	-0.7
1,495,487	-		SO1432	0.78	+0.9
1,495,512	+		SO1432	0.84	-1.9
1,495,520	-		SO1432	0.85	-1.7
1,495,531	-		SO1432	0.88	-0.9
1,495,531	-		SO1432	0.88	+0.6
1,495,547	+				-1.3
1,495,555	-				-0.2
1,495,555	-				-0.8
1,495,568	+				-0.9
1,495,617	+				+0.3
1,495,617	+				+1.4
1,495,625	-				-0.1
1,495,627	+				-0.0
1,495,709	+				+0.6
1,495,709	+				-1.7
1,495,717	-				+0.3
1,495,786	+				-0.2
1,495,794	-				-0.7
1,495,806	+				+1.0
1,495,812	-				-0.7
1,495,814	+				+0.5
1,495,822	-				-0.2
1,495,822	-				-2.7
1,495,822	-				+0.2
1,495,822	-				+0.2
1,495,900	-		SO1434	0.10	+0.9
1,495,912	-		SO1434	0.11	+3.1
1,495,915	+		SO1434	0.11	-0.2
1,495,920	+		SO1434	0.12	+0.0
1,495,925	+		SO1434	0.12	-0.0
1,495,933	-		SO1434	0.12	+0.6
1,495,933	-		SO1434	0.12	+0.5
1,495,962	-		SO1434	0.14	-1.3
1,495,973	+		SO1434	0.15	+1.6
1,496,104	-		SO1434	0.23	+0.6
1,496,128	+		SO1434	0.24	+0.3
1,496,180	+		SO1434	0.28	+1.9
1,496,188	-		SO1434	0.28	+2.4
1,496,193	+		SO1434	0.28	-0.4
1,496,201	-		SO1434	0.29	-2.0
1,496,382	-		SO1434	0.40	+0.4
1,496,384	-		SO1434	0.40	+0.2
1,496,433	-		SO1434	0.43	+0.2
1,496,433	-		SO1434	0.43	-2.5
1,496,433	-		SO1434	0.43	-0.4
1,496,435	+		SO1434	0.43	-0.6
1,496,435	+		SO1434	0.43	-1.6
1,496,435	+		SO1434	0.43	+0.3
1,496,435	+		SO1434	0.43	-1.0
1,496,469	+		SO1434	0.45	+1.1
1,496,469	+		SO1434	0.45	+1.7
1,496,517	+		SO1434	0.48	-0.3
1,496,532	-		SO1434	0.49	+0.5
1,496,554	-		SO1434	0.51	-0.2
1,496,556	+		SO1434	0.51	-0.8
1,496,564	+		SO1434	0.51	+0.1
1,496,572	-		SO1434	0.52	+0.6
1,496,572	-		SO1434	0.52	+1.1
1,496,611	-		SO1434	0.54	-3.8
1,496,614	+		SO1434	0.54	-0.7
1,496,614	+		SO1434	0.54	+3.8
1,496,617	-		SO1434	0.54	+0.1
1,496,622	-		SO1434	0.55	+0.7
1,496,675	+		SO1434	0.58	-0.5
1,496,675	+		SO1434	0.58	-1.3
1,496,675	+		SO1434	0.58	+0.8
1,496,675	+		SO1434	0.58	+0.6
1,496,678	+		SO1434	0.58	-1.2
1,496,679	-		SO1434	0.58	-0.2
1,496,683	-		SO1434	0.58	+1.0
1,496,683	-		SO1434	0.58	-0.1
1,496,683	-		SO1434	0.58	+1.1
1,496,686	-		SO1434	0.59	+0.2
1,496,711	-		SO1434	0.60	-1.3
1,496,742	+		SO1434	0.62	+1.7
1,496,742	+		SO1434	0.62	+0.5
1,496,742	+		SO1434	0.62	+0.5
1,496,750	-		SO1434	0.63	+0.2
1,496,750	-		SO1434	0.63	-1.7
1,496,750	-		SO1434	0.63	-1.7
1,496,750	-		SO1434	0.63	-2.7
1,496,750	-		SO1434	0.63	-0.4
1,496,750	-		SO1434	0.63	-1.0
1,496,793	-		SO1434	0.65	-0.2
1,496,810	+		SO1434	0.66	-2.4
1,496,810	+		SO1434	0.66	-0.3
1,496,818	-		SO1434	0.67	-0.6
1,496,825	+		SO1434	0.67	+0.5
1,496,830	-		SO1434	0.67	+0.1
1,496,831	-		SO1434	0.68	+1.4
1,496,840	+		SO1434	0.68	-0.2
1,496,840	+		SO1434	0.68	+0.1
1,496,848	-		SO1434	0.69	-1.6
1,496,852	-		SO1434	0.69	+0.4
1,496,965	+		SO1434	0.76	+1.2
1,496,965	+		SO1434	0.76	-0.4
1,496,973	-		SO1434	0.76	+0.6
1,496,973	-		SO1434	0.76	-0.8
1,496,973	-		SO1434	0.76	+0.2
1,496,973	-		SO1434	0.76	-0.0
1,496,973	-		SO1434	0.76	+0.9
1,496,974	-		SO1434	0.76	-2.8
1,496,974	-		SO1434	0.76	-0.1
1,496,984	+		SO1434	0.77	+0.7
1,496,984	+		SO1434	0.77	+1.4
1,496,992	-		SO1434	0.77	+1.3
1,496,992	-		SO1434	0.77	+0.2
1,496,992	-		SO1434	0.77	-0.6
1,497,036	+		SO1434	0.80	+1.3
1,497,073	-		SO1434	0.82	+0.6
1,497,073	-		SO1434	0.82	+0.0
1,497,162	+		SO1434	0.88	+0.3
1,497,168	+		SO1434	0.88	-0.2
1,497,174	+		SO1434	0.89	+0.2
1,497,177	-		SO1434	0.89	-2.3
1,497,177	-		SO1434	0.89	-0.3
1,497,182	-		SO1434	0.89	-1.6
1,497,201	+				+1.0
1,497,201	+				-2.4
1,497,211	+				+0.8
1,497,211	+				-0.6
1,497,211	-				-1.7
1,497,219	-				+1.1
1,497,234	+				-0.6
1,497,234	+				-2.3
1,497,239	+				+0.2
1,497,242	-				+1.6
1,497,247	-				+0.1
1,497,249	+				-0.9
1,497,250	-				-1.6
1,497,366	-				+0.6
1,497,408	+				-0.0
1,497,413	+				+0.8
1,497,417	-				-1.6
1,497,417	-				+0.5
1,497,427	+				-1.0
1,497,437	-				+1.2
1,497,459	+				+0.6
1,497,459	-				-0.1
1,497,499	+				+0.0
1,497,506	+				-0.9
1,497,512	+				-1.2
1,497,514	-				+0.4
1,497,515	-				+0.6
1,497,528	+				+0.2
1,497,534	+				+0.1
1,497,534	+				-1.2
1,497,534	+				+0.3
1,497,534	+				-0.5
1,497,534	+				-2.2
1,497,536	-				-0.2
1,497,538	+				-1.0
1,497,542	-				-2.9
1,497,542	-				+0.8
1,497,542	-				+0.2
1,497,546	+				-0.1
1,497,546	+				-0.6
1,497,546	+				-2.1
1,497,546	+				-3.4
1,497,546	+				-1.6
1,497,546	-				-0.0
1,497,546	-				+0.3
1,497,546	-				-1.0
1,497,546	-				-1.5
1,497,546	-				+0.3
1,497,554	-				+0.6
1,497,554	-				-0.0
1,497,554	-				-0.4
1,497,554	-				-0.6
1,497,556	+				+1.4
1,497,556	+				+0.3
1,497,556	+				-0.7
1,497,556	+				+0.1
1,497,556	+				-0.4
1,497,556	+				+2.3
1,497,559	-				-0.4
1,497,564	-				-1.2
1,497,566	+				+1.2
1,497,591	+				+1.4
1,497,617	+				+1.5
1,497,625	+				-0.5
1,497,625	-				-1.8
1,497,625	-				-2.1
1,497,630	+				-1.8
1,497,630	+				+1.4
1,497,630	-				+0.3
1,497,633	-				+1.1
1,497,633	-				-1.0
1,497,636	-				-0.8
1,497,636	-				-0.3
1,497,638	+				-0.6
1,497,646	-				-0.2
1,497,654	-				-0.5
1,497,742	+				-1.4
1,497,742	+				+1.3
1,497,742	+				-0.4
1,497,742	+				-1.7
1,497,745	-				+1.1
1,497,750	-				-0.6
1,497,821	-				-2.6
1,497,828	+				-0.4
1,497,828	+				+1.3
1,497,829	+				+0.8
1,497,829	+				-0.6
1,497,830	+				+2.3
1,497,837	-				-1.1
1,497,840	+				+2.5
1,497,840	+				+1.5
1,497,848	-				+0.9
1,497,882	+				+1.3
1,497,916	+				-0.0
1,498,018	+				+1.0
1,498,018	-				+2.5
1,498,023	-				-0.5
1,498,023	-				-1.6
1,498,036	-				+0.2
1,498,040	+				-0.4
1,498,042	+				-0.1
1,498,070	-		SO_1435	0.12	-1.1
1,498,101	+		SO_1435	0.16	-0.1
1,498,101	+		SO_1435	0.16	-0.9
1,498,101	+		SO_1435	0.16	+1.6
1,498,104	-		SO_1435	0.16	-1.1
1,498,109	-		SO_1435	0.17	+1.6
1,498,109	-		SO_1435	0.17	-0.3
1,498,109	-		SO_1435	0.17	+0.8
1,498,109	-		SO_1435	0.17	+0.1
1,498,109	-		SO_1435	0.17	+0.3
1,498,109	-		SO_1435	0.17	-1.7
1,498,109	-		SO_1435	0.17	-1.0
1,498,109	-		SO_1435	0.17	-1.8
1,498,109	-		SO_1435	0.17	-1.8
1,498,124	-		SO_1435	0.19	+2.6
1,498,138	+		SO_1435	0.21	+0.8
1,498,192	-		SO_1435	0.28	+0.8
1,498,192	-		SO_1435	0.28	+0.4
1,498,202	-		SO_1435	0.29	+0.7
1,498,203	-		SO_1435	0.29	+2.0
1,498,208	+		SO_1435	0.30	+1.2
1,498,216	-		SO_1435	0.31	-0.4
1,498,216	-		SO_1435	0.31	+0.7
1,498,273	+		SO_1435	0.38	+1.3
1,498,280	+		SO_1435	0.39	-0.2
1,498,280	+		SO_1435	0.39	-1.7
1,498,288	-		SO_1435	0.40	-0.8
1,498,288	-		SO_1435	0.40	+0.1
1,498,300	+		SO_1435	0.41	-0.9
1,498,308	+		SO_1435	0.42	+1.3
1,498,308	+		SO_1435	0.42	+0.5
1,498,310	+		SO_1435	0.42	-0.6
1,498,310	+		SO_1435	0.42	-2.1
1,498,310	+		SO_1435	0.42	+1.1
1,498,310	+		SO_1435	0.42	-0.2
1,498,310	+		SO_1435	0.42	+0.6
1,498,318	-		SO_1435	0.43	-1.7
1,498,318	-		SO_1435	0.43	+2.0
1,498,318	-		SO_1435	0.43	+1.5
1,498,318	-		SO_1435	0.43	-0.6
1,498,318	-		SO_1435	0.43	+0.1
1,498,318	-		SO_1435	0.43	-0.6
1,498,318	-		SO_1435	0.43	+1.3
1,498,323	-		SO_1435	0.44	+0.5
1,498,323	-		SO_1435	0.44	-0.6
1,498,352	-		SO_1435	0.48	-2.8