Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0850 and SO0851 are separated by 15 nucleotides SO0851 and SO0852 overlap by 13 nucleotides SO0852 and SO0853 overlap by 10 nucleotides SO0853 and SO0854 are separated by 1 nucleotides
SO0850: SO0850 - hypothetical protein (NCBI ptt file), at 872,300 to 873,928
SO0850
SO0851: SO0851 - hypothetical protein (NCBI ptt file), at 873,944 to 874,501
SO0851
SO0852: SO0852 - hypothetical protein (NCBI ptt file), at 874,489 to 874,896
SO0852
SO0853: SO0853 - pilin, putative (NCBI ptt file), at 874,887 to 875,321
SO0853
SO0854: SO0854 - type IV pilin, putative (NCBI ptt file), at 875,323 to 875,694
SO0854
Position (kb) 874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 873.545 kb on + strand, within SO0850 at 873.576 kb on + strand, within SO0850 at 873.623 kb on + strand, within SO0850 at 873.625 kb on - strand, within SO0850 at 873.656 kb on - strand, within SO0850 at 873.751 kb on + strand, within SO0850 at 873.764 kb on - strand, within SO0850 at 873.822 kb on - strand at 873.875 kb on + strand at 873.984 kb on + strand at 873.992 kb on - strand at 873.994 kb on + strand at 874.007 kb on - strand, within SO0851 at 874.044 kb on + strand, within SO0851 at 874.139 kb on + strand, within SO0851 at 874.139 kb on + strand, within SO0851 at 874.147 kb on - strand, within SO0851 at 874.214 kb on + strand, within SO0851 at 874.214 kb on + strand, within SO0851 at 874.227 kb on - strand, within SO0851 at 874.438 kb on + strand, within SO0851 at 874.473 kb on + strand at 874.493 kb on + strand at 874.534 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.603 kb on - strand, within SO0852 at 874.603 kb on - strand, within SO0852 at 874.795 kb on - strand, within SO0852 at 874.809 kb on + strand, within SO0852 at 874.809 kb on + strand, within SO0852 at 874.854 kb on + strand, within SO0852 at 875.017 kb on + strand, within SO0853 at 875.018 kb on + strand, within SO0853 at 875.115 kb on - strand, within SO0853 at 875.132 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.245 kb on - strand, within SO0853 at 875.373 kb on + strand, within SO0854 at 875.374 kb on + strand, within SO0854 at 875.425 kb on - strand, within SO0854 at 875.459 kb on - strand, within SO0854 at 875.475 kb on - strand, within SO0854 at 875.488 kb on + strand, within SO0854 at 875.648 kb on + strand, within SO0854 at 875.667 kb on + strand at 875.675 kb on - strand at 875.708 kb on - strand at 875.720 kb on + strand at 875.861 kb on + strand at 875.869 kb on - strand at 875.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 873,545 + SO0850 0.76 +0.3 873,576 + SO0850 0.78 -3.4 873,623 + SO0850 0.81 -1.1 873,625 - SO0850 0.81 +0.3 873,656 - SO0850 0.83 -2.0 873,751 + SO0850 0.89 +2.8 873,764 - SO0850 0.90 -2.6 873,822 - -0.1 873,875 + +0.6 873,984 + -1.5 873,992 - -0.1 873,994 + -0.1 874,007 - SO0851 0.11 -0.1 874,044 + SO0851 0.18 +0.0 874,139 + SO0851 0.35 -1.1 874,139 + SO0851 0.35 -0.7 874,147 - SO0851 0.36 +1.2 874,214 + SO0851 0.48 -1.4 874,214 + SO0851 0.48 +0.4 874,227 - SO0851 0.51 -0.5 874,438 + SO0851 0.89 -0.4 874,473 + -0.1 874,493 + -1.9 874,534 + SO0852 0.11 -1.3 874,595 + SO0852 0.26 -0.4 874,595 + SO0852 0.26 +0.1 874,595 + SO0852 0.26 +0.6 874,595 + SO0852 0.26 -0.1 874,603 - SO0852 0.28 +2.9 874,603 - SO0852 0.28 -0.3 874,795 - SO0852 0.75 +0.6 874,809 + SO0852 0.78 -0.1 874,809 + SO0852 0.78 +0.8 874,854 + SO0852 0.89 +0.3 875,017 + SO0853 0.30 -0.7 875,018 + SO0853 0.30 +0.1 875,115 - SO0853 0.52 -1.1 875,132 + SO0853 0.56 +2.1 875,237 + SO0853 0.80 +0.2 875,237 + SO0853 0.80 -0.2 875,237 + SO0853 0.80 +1.7 875,245 - SO0853 0.82 -2.6 875,373 + SO0854 0.13 +0.3 875,374 + SO0854 0.14 -0.2 875,425 - SO0854 0.27 +0.2 875,459 - SO0854 0.37 +0.7 875,475 - SO0854 0.41 +0.5 875,488 + SO0854 0.44 +0.4 875,648 + SO0854 0.87 -0.2 875,667 + +1.4 875,675 - -2.0 875,708 - -0.5 875,720 + -1.6 875,861 + -0.5 875,869 - -1.0 875,869 - -1.9
Or see this region's nucleotide sequence