Strain Fitness in Shewanella oneidensis MR-1 around SO0639

Experiment: Ferric citrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0636 and SO0637 overlap by 4 nucleotidesSO0637 and SO0638 are separated by 27 nucleotidesSO0638 and SO0639 are separated by 188 nucleotidesSO0639 and SO0640 are separated by 448 nucleotides SO0636: SO0636 - acetyltransferase, GNAT family (NCBI ptt file), at 663,421 to 663,915 SO0636 SO0637: SO0637 - conserved hypothetical protein (NCBI ptt file), at 663,912 to 664,187 SO0637 SO0638: SO0638 - hypothetical protein (NCBI ptt file), at 664,215 to 664,415 SO0638 SO0639: SO0639 - Collagenase family (NCBI ptt file), at 664,604 to 667,717 SO0639 SO0640: SO0640 - alcohol dehydrogenase, zinc-containing (NCBI ptt file), at 668,166 to 669,164 SO0640 Position (kb) 664 665 666 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 663.732 kb on + strand, within SO0636at 663.930 kb on + strandat 664.114 kb on + strand, within SO0637at 664.265 kb on + strand, within SO0638at 664.293 kb on + strand, within SO0638at 664.352 kb on + strand, within SO0638at 664.393 kb on - strand, within SO0638at 664.506 kb on + strandat 664.506 kb on + strandat 664.506 kb on + strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.624 kb on + strandat 664.630 kb on + strandat 664.633 kb on - strandat 664.645 kb on - strandat 664.705 kb on + strandat 664.768 kb on - strandat 664.779 kb on - strandat 664.794 kb on - strandat 664.876 kb on + strandat 664.878 kb on + strandat 664.897 kb on + strandat 664.897 kb on + strandat 664.904 kb on + strandat 664.978 kb on + strand, within SO0639at 664.987 kb on - strand, within SO0639at 665.025 kb on - strand, within SO0639at 665.082 kb on - strand, within SO0639at 665.095 kb on - strand, within SO0639at 665.106 kb on - strand, within SO0639at 665.107 kb on - strand, within SO0639at 665.245 kb on + strand, within SO0639at 665.392 kb on + strand, within SO0639at 665.524 kb on + strand, within SO0639at 665.555 kb on + strand, within SO0639at 665.629 kb on - strand, within SO0639at 665.632 kb on + strand, within SO0639at 665.632 kb on + strand, within SO0639at 665.632 kb on + strand, within SO0639at 665.632 kb on + strand, within SO0639at 665.640 kb on - strand, within SO0639at 665.640 kb on - strand, within SO0639at 665.656 kb on - strand, within SO0639at 665.727 kb on + strand, within SO0639at 665.989 kb on + strand, within SO0639at 665.995 kb on + strand, within SO0639at 666.047 kb on - strand, within SO0639at 666.205 kb on - strand, within SO0639at 666.384 kb on + strand, within SO0639at 666.384 kb on + strand, within SO0639at 666.392 kb on - strand, within SO0639at 666.392 kb on - strand, within SO0639at 666.448 kb on + strand, within SO0639at 666.449 kb on + strand, within SO0639at 666.449 kb on + strand, within SO0639at 666.513 kb on - strand, within SO0639at 666.513 kb on - strand, within SO0639at 666.528 kb on + strand, within SO0639at 666.585 kb on + strand, within SO0639at 666.699 kb on + strand, within SO0639at 666.700 kb on + strand, within SO0639at 666.720 kb on + strand, within SO0639at 666.728 kb on - strand, within SO0639at 666.811 kb on + strand, within SO0639at 666.881 kb on + strand, within SO0639at 666.944 kb on + strand, within SO0639at 666.969 kb on - strand, within SO0639at 667.044 kb on + strand, within SO0639at 667.121 kb on + strand, within SO0639at 667.200 kb on - strand, within SO0639at 667.369 kb on - strand, within SO0639at 667.464 kb on - strandat 667.489 kb on + strandat 667.504 kb on - strandat 667.637 kb on + strandat 667.645 kb on - strandat 667.651 kb on + strandat 667.659 kb on - strandat 667.679 kb on + strandat 667.996 kb on + strandat 668.004 kb on - strandat 668.063 kb on - strandat 668.063 kb on - strandat 668.076 kb on + strandat 668.099 kb on + strandat 668.107 kb on - strandat 668.193 kb on + strandat 668.200 kb on + strandat 668.274 kb on + strand, within SO0640at 668.274 kb on + strand, within SO0640at 668.282 kb on - strand, within SO0640at 668.282 kb on - strand, within SO0640at 668.326 kb on + strand, within SO0640at 668.418 kb on - strand, within SO0640at 668.470 kb on - strand, within SO0640at 668.478 kb on + strand, within SO0640at 668.486 kb on - strand, within SO0640at 668.493 kb on + strand, within SO0640at 668.573 kb on - strand, within SO0640at 668.677 kb on + strand, within SO0640at 668.677 kb on + strand, within SO0640at 668.685 kb on - strand, within SO0640at 668.685 kb on - strand, within SO0640at 668.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor
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663,732 + SO0636 0.63 -1.6
663,930 + -0.8
664,114 + SO0637 0.73 -0.4
664,265 + SO0638 0.25 -0.0
664,293 + SO0638 0.39 -0.5
664,352 + SO0638 0.68 +0.4
664,393 - SO0638 0.89 +0.1
664,506 + +1.2
664,506 + -0.4
664,506 + -0.4
664,514 - -0.5
664,514 - -0.3
664,514 - +0.5
664,514 - -0.5
664,514 - -0.2
664,514 - -0.8
664,514 - +2.2
664,514 - +0.1
664,514 - +0.8
664,624 + +0.2
664,630 + +3.3
664,633 - +1.4
664,645 - +0.2
664,705 + -0.3
664,768 - +0.7
664,779 - -0.4
664,794 - -0.8
664,876 + -0.3
664,878 + +0.2
664,897 + +0.8
664,897 + -0.8
664,904 + -1.1
664,978 + SO0639 0.12 +0.0
664,987 - SO0639 0.12 +0.5
665,025 - SO0639 0.14 +0.5
665,082 - SO0639 0.15 +1.2
665,095 - SO0639 0.16 -0.9
665,106 - SO0639 0.16 -0.5
665,107 - SO0639 0.16 +0.0
665,245 + SO0639 0.21 +0.5
665,392 + SO0639 0.25 +1.3
665,524 + SO0639 0.30 +0.2
665,555 + SO0639 0.31 -1.3
665,629 - SO0639 0.33 -0.2
665,632 + SO0639 0.33 -3.1
665,632 + SO0639 0.33 -0.7
665,632 + SO0639 0.33 +1.4
665,632 + SO0639 0.33 -1.0
665,640 - SO0639 0.33 -2.1
665,640 - SO0639 0.33 -0.8
665,656 - SO0639 0.34 -1.3
665,727 + SO0639 0.36 -0.3
665,989 + SO0639 0.44 +1.0
665,995 + SO0639 0.45 -1.4
666,047 - SO0639 0.46 -1.1
666,205 - SO0639 0.51 +0.0
666,384 + SO0639 0.57 +0.0
666,384 + SO0639 0.57 -1.1
666,392 - SO0639 0.57 +0.9
666,392 - SO0639 0.57 +0.2
666,448 + SO0639 0.59 +0.3
666,449 + SO0639 0.59 -0.2
666,449 + SO0639 0.59 -1.2
666,513 - SO0639 0.61 -0.9
666,513 - SO0639 0.61 -1.3
666,528 + SO0639 0.62 -2.1
666,585 + SO0639 0.64 -1.0
666,699 + SO0639 0.67 -0.3
666,700 + SO0639 0.67 +1.1
666,720 + SO0639 0.68 -2.0
666,728 - SO0639 0.68 -0.2
666,811 + SO0639 0.71 -0.5
666,881 + SO0639 0.73 +0.5
666,944 + SO0639 0.75 +0.1
666,969 - SO0639 0.76 -0.3
667,044 + SO0639 0.78 -2.2
667,121 + SO0639 0.81 +0.6
667,200 - SO0639 0.83 +0.5
667,369 - SO0639 0.89 -0.7
667,464 - +0.1
667,489 + -0.5
667,504 - +0.0
667,637 + -0.0
667,645 - +0.3
667,651 + +1.0
667,659 - +0.3
667,679 + +0.1
667,996 + +0.2
668,004 - +2.8
668,063 - +0.7
668,063 - +1.9
668,076 + -0.0
668,099 + -0.5
668,107 - -0.8
668,193 + -1.5
668,200 + +0.1
668,274 + SO0640 0.11 -0.3
668,274 + SO0640 0.11 +0.3
668,282 - SO0640 0.12 +1.0
668,282 - SO0640 0.12 +0.7
668,326 + SO0640 0.16 +1.3
668,418 - SO0640 0.25 -0.2
668,470 - SO0640 0.30 -1.3
668,478 + SO0640 0.31 +0.9
668,486 - SO0640 0.32 -0.1
668,493 + SO0640 0.33 -2.3
668,573 - SO0640 0.41 -0.1
668,677 + SO0640 0.51 +1.0
668,677 + SO0640 0.51 +0.7
668,685 - SO0640 0.52 -1.1
668,685 - SO0640 0.52 +1.0
668,706 + -0.8

Or see this region's nucleotide sequence