Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002521

Experiment: shik 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	shik 5mM
2,841,515	+		ABIE53_002520	0.28	-0.1
2,841,515	+		ABIE53_002520	0.28	-1.1
2,841,515	+		ABIE53_002520	0.28	-0.1
2,841,515	+		ABIE53_002520	0.28	-1.3
2,841,515	+		ABIE53_002520	0.28	+1.5
2,841,515	+		ABIE53_002520	0.28	+0.3
2,841,515	+		ABIE53_002520	0.28	-1.3
2,841,516	-		ABIE53_002520	0.28	-0.2
2,841,516	-		ABIE53_002520	0.28	-0.3
2,841,516	-		ABIE53_002520	0.28	+0.5
2,841,516	-		ABIE53_002520	0.28	-1.5
2,841,554	+		ABIE53_002520	0.33	+1.5
2,841,555	-		ABIE53_002520	0.33	-0.5
2,841,555	-		ABIE53_002520	0.33	+0.5
2,841,555	-		ABIE53_002520	0.33	-0.1
2,841,623	+		ABIE53_002520	0.40	-0.1
2,841,623	+		ABIE53_002520	0.40	-0.1
2,841,623	+		ABIE53_002520	0.40	+0.0
2,841,623	+		ABIE53_002520	0.40	-0.1
2,841,623	+		ABIE53_002520	0.40	-0.4
2,841,623	+		ABIE53_002520	0.40	-0.6
2,841,623	+		ABIE53_002520	0.40	-0.2
2,841,623	+		ABIE53_002520	0.40	+0.1
2,841,623	+		ABIE53_002520	0.40	-1.9
2,841,623	+		ABIE53_002520	0.40	-0.1
2,841,624	-		ABIE53_002520	0.40	+0.6
2,841,624	-		ABIE53_002520	0.40	+0.7
2,841,624	-		ABIE53_002520	0.40	+1.1
2,841,624	-		ABIE53_002520	0.40	-0.3
2,841,624	-		ABIE53_002520	0.40	-1.5
2,841,624	-		ABIE53_002520	0.40	-0.1
2,841,624	-		ABIE53_002520	0.40	-1.7
2,841,624	-		ABIE53_002520	0.40	-0.2
2,841,624	-		ABIE53_002520	0.40	-0.2
2,841,624	-		ABIE53_002520	0.40	-1.7
2,841,624	-		ABIE53_002520	0.40	-2.2
2,841,782	+		ABIE53_002520	0.58	-0.1
2,841,782	+		ABIE53_002520	0.58	+0.6
2,841,783	-		ABIE53_002520	0.58	+0.9
2,841,824	+		ABIE53_002520	0.63	-0.1
2,841,875	+		ABIE53_002520	0.69	+0.9
2,841,875	+		ABIE53_002520	0.69	-1.0
2,841,875	+		ABIE53_002520	0.69	+0.5
2,841,875	+		ABIE53_002520	0.69	-1.0
2,841,875	+		ABIE53_002520	0.69	-1.0
2,841,876	-		ABIE53_002520	0.69	+0.3
2,841,876	-		ABIE53_002520	0.69	+0.6
2,841,914	+		ABIE53_002520	0.73	+0.5
2,841,915	-		ABIE53_002520	0.73	-0.4
2,842,298	+				-0.6
2,842,298	+				+2.1
2,842,299	-				-0.8
2,842,299	-				+0.6
2,842,299	-				-0.9
2,842,299	-				+0.9
2,842,362	-				+0.4
2,842,431	+				-0.1
2,842,431	+				-0.5
2,842,481	+				-0.8
2,842,481	+				+1.2
2,842,481	+				-0.8
2,842,482	-				-0.5
2,842,482	-				-0.6
2,842,482	-				+1.7
2,842,482	-				-1.8
2,842,482	-				-0.6
2,842,482	-				+0.9
2,842,482	-				+1.1
2,842,482	-				-1.5
2,842,482	-				+0.5
2,842,573	+				-0.1
2,842,574	-				-0.8
2,842,591	+		ABIE53_002521	0.11	-0.1
2,842,591	+		ABIE53_002521	0.11	-0.5
2,842,591	+		ABIE53_002521	0.11	-0.9
2,842,592	-		ABIE53_002521	0.11	-0.3
2,842,592	-		ABIE53_002521	0.11	+0.3
2,842,798	-		ABIE53_002521	0.25	+0.2
2,842,861	+		ABIE53_002521	0.29	+0.5
2,842,861	+		ABIE53_002521	0.29	-1.3
2,842,861	+		ABIE53_002521	0.29	-1.6
2,842,862	-		ABIE53_002521	0.29	+1.3
2,842,862	-		ABIE53_002521	0.29	-1.1
2,842,862	-		ABIE53_002521	0.29	-1.4
2,842,862	-		ABIE53_002521	0.29	-1.1
2,843,002	+		ABIE53_002521	0.38	-0.1
2,843,003	-		ABIE53_002521	0.39	-1.3
2,843,003	-		ABIE53_002521	0.39	-2.0
2,843,003	-		ABIE53_002521	0.39	-1.0
2,843,161	+		ABIE53_002521	0.49	-1.5
2,843,161	+		ABIE53_002521	0.49	-0.7
2,843,162	-		ABIE53_002521	0.49	-0.1
2,843,205	+		ABIE53_002521	0.52	-0.8
2,843,205	+		ABIE53_002521	0.52	-0.5
2,843,206	-		ABIE53_002521	0.52	+0.1
2,843,206	-		ABIE53_002521	0.52	+0.5
2,843,263	+		ABIE53_002521	0.56	-1.3
2,843,264	-		ABIE53_002521	0.56	+0.9
2,843,479	+		ABIE53_002521	0.71	+0.6
2,843,479	+		ABIE53_002521	0.71	+2.1
2,843,479	+		ABIE53_002521	0.71	-1.8
2,843,479	+		ABIE53_002521	0.71	-1.7
2,843,480	-		ABIE53_002521	0.71	-0.5
2,843,480	-		ABIE53_002521	0.71	+0.4
2,843,602	+		ABIE53_002521	0.79	-1.2
2,843,602	+		ABIE53_002521	0.79	+2.1
2,843,602	+		ABIE53_002521	0.79	-0.6
2,843,602	+		ABIE53_002521	0.79	-0.1
2,843,602	+		ABIE53_002521	0.79	-0.3
2,843,603	-		ABIE53_002521	0.79	+0.4
2,843,603	-		ABIE53_002521	0.79	-1.7
2,843,603	-		ABIE53_002521	0.79	-1.3
2,843,644	+		ABIE53_002521	0.82	-0.7
2,843,645	-		ABIE53_002521	0.82	-2.4
2,843,845	+				-1.3
2,843,846	-				+0.1
2,843,846	-				-1.0
2,843,911	+				-0.1
2,843,912	-				-0.2
2,843,992	+		ABIE53_002522	0.11	+0.5
2,843,992	+		ABIE53_002522	0.11	+2.1
2,843,993	-		ABIE53_002522	0.12	+0.5
2,844,092	-		ABIE53_002522	0.32	-0.2
2,844,092	-		ABIE53_002522	0.32	+0.9
2,844,092	-		ABIE53_002522	0.32	+1.9
2,844,160	+		ABIE53_002522	0.46	+2.5
2,844,160	+		ABIE53_002522	0.46	-0.8
2,844,161	-		ABIE53_002522	0.47	-1.3
2,844,271	+		ABIE53_002522	0.70	+0.2
2,844,271	+		ABIE53_002522	0.70	-0.1
2,844,272	-		ABIE53_002522	0.70	-0.5
2,844,272	-		ABIE53_002522	0.70	+0.5
2,844,272	-		ABIE53_002522	0.70	+0.7
2,844,272	-		ABIE53_002522	0.70	-1.5
2,844,292	+		ABIE53_002522	0.74	+1.1
2,844,293	-		ABIE53_002522	0.74	-0.2
2,844,324	-		ABIE53_002522	0.81	+0.7
2,844,352	+		ABIE53_002522	0.86	-2.0
2,844,352	+		ABIE53_002522	0.86	+0.5
2,844,353	-		ABIE53_002522	0.87	+0.5
2,844,381	+				-0.5
2,844,382	-				-1.8
2,844,396	-				-0.1
2,844,396	-				-0.2
2,844,403	+				-1.5
2,844,416	+				+0.8
2,844,416	+				-0.8
2,844,416	+				+1.3
2,844,416	+				+0.2
2,844,416	+				-0.2
2,844,416	+				-1.0
2,844,416	+				+0.5
2,844,416	+				+1.2
2,844,416	+				-1.7
2,844,416	+				-0.1
2,844,416	+				-0.8
2,844,416	+				-2.3
2,844,416	+				-0.7
2,844,417	-				-0.2
2,844,417	-				+0.8
2,844,417	-				+1.3
2,844,417	-				+0.2
2,844,417	-				+0.7
2,844,417	-				+0.7
2,844,417	-				+1.2
2,844,417	-				+1.1
2,844,417	-				-0.4
2,844,417	-				-1.0
2,844,417	-				-1.4
2,844,417	-				-1.0
2,844,417	-				-1.5
2,844,417	-				+0.6
2,844,417	-				+0.3
2,844,417	-				-0.8
2,844,417	-				-2.2
2,844,417	-				+1.1
2,844,417	-				-2.0
2,844,417	-				-0.6
2,844,417	-				+0.4
2,844,417	-				+0.8
2,844,444	+				-0.2
2,844,444	+				-0.5
2,844,445	-				+0.5
2,844,465	-				-0.3
2,844,465	-				-0.5
2,844,465	-				-2.3
2,844,520	+				+1.5
2,844,520	+				+0.0
2,844,520	+				+0.3
2,844,521	-				+0.3
2,844,521	-				-0.1
2,844,526	-				+2.2
2,844,563	+				+1.5
2,844,798	+		ABIE53_002523	0.13	+0.3
2,844,798	+		ABIE53_002523	0.13	-0.6
2,844,800	+		ABIE53_002523	0.13	-0.5
2,844,800	+		ABIE53_002523	0.13	-0.6
2,844,800	+		ABIE53_002523	0.13	-0.6
2,844,801	-		ABIE53_002523	0.13	-1.9
2,844,801	-		ABIE53_002523	0.13	-0.3
2,844,801	-		ABIE53_002523	0.13	-0.3
2,844,801	-		ABIE53_002523	0.13	-0.8